data_P5M
#

_chem_comp.id                                   P5M
_chem_comp.name                                 "2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H13 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Petunidin
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2014-10-15
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       317.270
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P5M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4REN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P5M  O30  O30  O  0  1  N  N  N   6.239  -2.628  18.466   4.786  -1.934  -0.423  O30  P5M   1  
P5M  C2   C2   C  0  1  Y  N  N   5.825  -3.465  17.475   4.161  -0.754  -0.177  C2   P5M   2  
P5M  C3   C3   C  0  1  Y  N  N   4.488  -3.308  16.844   2.758  -0.701  -0.094  C3   P5M   3  
P5M  C9   C9   C  0  1  Y  N  N   3.605  -2.309  17.228   1.965  -1.857  -0.261  C9   P5M   4  
P5M  C10  C10  C  0  1  Y  N  N   2.368  -2.210  16.598   0.605  -1.663  -0.154  C10  P5M   5  
P5M  O27  O27  O  0  1  N  N  N   1.519  -1.221  16.994  -0.264  -2.699  -0.295  O27  P5M   6  
P5M  C1   C1   C  0  1  Y  N  N   6.651  -4.492  17.033   4.892   0.388  -0.003  C1   P5M   7  
P5M  C6   C6   C  0  1  Y  N  N   6.249  -5.362  16.020   4.256   1.605   0.250  C6   P5M   8  
P5M  O29  O29  O  0  1  N  N  N   7.095  -6.353  15.624   5.003   2.727   0.419  O29  P5M   9  
P5M  C5   C5   C  0  1  Y  N  N   5.006  -5.248  15.401   2.883   1.685   0.330  C5   P5M  10  
P5M  C4   C4   C  0  1  Y  N  N   4.109  -4.258  15.772   2.104   0.530   0.163  C4   P5M  11  
P5M  O12  O12  O  1  1  Y  N  N   2.894  -4.160  15.157   0.889   0.585   0.231  O12  P5M  12  
P5M  C11  C11  C  0  1  Y  N  N   2.004  -3.181  15.519   0.144  -0.359   0.105  C11  P5M  13  
P5M  C14  C14  C  0  1  Y  N  N   0.707  -3.162  14.780  -1.313  -0.131   0.215  C14  P5M  14  
P5M  C15  C15  C  0  1  Y  N  N   0.442  -4.266  13.977  -1.944  -0.225   1.456  C15  P5M  15  
P5M  C16  C16  C  0  1  Y  N  N  -0.727  -4.369  13.236  -3.306  -0.006   1.557  C16  P5M  16  
P5M  O22  O22  O  0  1  N  N  N  -0.955  -5.468  12.465  -3.921  -0.097   2.767  O22  P5M  17  
P5M  C19  C19  C  0  1  Y  N  N  -0.201  -2.104  14.860  -2.059   0.184  -0.923  C19  P5M  18  
P5M  C18  C18  C  0  1  Y  N  N  -1.403  -2.116  14.155  -3.421   0.397  -0.818  C18  P5M  19  
P5M  O21  O21  O  0  1  N  N  N  -2.283  -1.069  14.250  -4.148   0.703  -1.926  O21  P5M  20  
P5M  C23  C23  C  0  1  N  N  N  -2.826  -0.715  15.521  -3.439   0.789  -3.164  C23  P5M  21  
P5M  C17  C17  C  0  1  Y  N  N  -1.721  -3.277  13.294  -4.047   0.309   0.422  C17  P5M  22  
P5M  O24  O24  O  0  1  N  N  N  -2.878  -3.346  12.577  -5.386   0.524   0.524  O24  P5M  23  
P5M  H1   H1   H  0  1  N  N  N   7.112  -2.876  18.747   4.922  -2.119  -1.363  H1   P5M  24  
P5M  H2   H2   H  0  1  N  N  N   3.875  -1.614  18.009   2.395  -2.827  -0.459  H2   P5M  25  
P5M  H3   H3   H  0  1  N  N  N   1.926  -0.711  17.685  -0.470  -3.155   0.532  H3   P5M  26  
P5M  H4   H4   H  0  1  N  N  N   7.624  -4.619  17.484   5.969   0.349  -0.062  H4   P5M  27  
P5M  H5   H5   H  0  1  N  N  N   7.897  -6.307  16.131   5.177   3.210  -0.399  H5   P5M  28  
P5M  H6   H6   H  0  1  N  N  N   4.737  -5.943  14.619   2.407   2.635   0.527  H6   P5M  29  
P5M  H7   H7   H  0  1  N  N  N   1.166  -5.066  13.929  -1.369  -0.469   2.337  H7   P5M  30  
P5M  H8   H8   H  0  1  N  N  N  -0.222  -6.067  12.542  -4.248  -0.983   2.976  H8   P5M  31  
P5M  H9   H9   H  0  1  N  N  N   0.034  -1.255  15.484  -1.572   0.262  -1.883  H9   P5M  32  
P5M  H10  H10  H  0  1  N  N  N  -3.507   0.141  15.404  -2.675   1.562  -3.092  H10  P5M  33  
P5M  H11  H11  H  0  1  N  N  N  -3.381  -1.571  15.934  -2.967  -0.170  -3.379  H11  P5M  34  
P5M  H12  H12  H  0  1  N  N  N  -2.009  -0.443  16.206  -4.135   1.039  -3.964  H12  P5M  35  
P5M  H13  H13  H  0  1  N  N  N  -3.395  -2.564  12.733  -5.625   1.445   0.694  H13  P5M  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P5M  O22  C16  SING  N  N   1  
P5M  O24  C17  SING  N  N   2  
P5M  C16  C17  DOUB  Y  N   3  
P5M  C16  C15  SING  Y  N   4  
P5M  C17  C18  SING  Y  N   5  
P5M  C15  C14  DOUB  Y  N   6  
P5M  C18  O21  SING  N  N   7  
P5M  C18  C19  DOUB  Y  N   8  
P5M  O21  C23  SING  N  N   9  
P5M  C14  C19  SING  Y  N  10  
P5M  C14  C11  SING  N  N  11  
P5M  O12  C11  DOUB  Y  N  12  
P5M  O12  C4   SING  Y  N  13  
P5M  C5   C4   DOUB  Y  N  14  
P5M  C5   C6   SING  Y  N  15  
P5M  C11  C10  SING  Y  N  16  
P5M  O29  C6   SING  N  N  17  
P5M  C4   C3   SING  Y  N  18  
P5M  C6   C1   DOUB  Y  N  19  
P5M  C10  O27  SING  N  N  20  
P5M  C10  C9   DOUB  Y  N  21  
P5M  C3   C9   SING  Y  N  22  
P5M  C3   C2   DOUB  Y  N  23  
P5M  C1   C2   SING  Y  N  24  
P5M  C2   O30  SING  N  N  25  
P5M  O30  H1   SING  N  N  26  
P5M  C9   H2   SING  N  N  27  
P5M  O27  H3   SING  N  N  28  
P5M  C1   H4   SING  N  N  29  
P5M  O29  H5   SING  N  N  30  
P5M  C5   H6   SING  N  N  31  
P5M  C15  H7   SING  N  N  32  
P5M  O22  H8   SING  N  N  33  
P5M  C19  H9   SING  N  N  34  
P5M  C23  H10  SING  N  N  35  
P5M  C23  H11  SING  N  N  36  
P5M  C23  H12  SING  N  N  37  
P5M  O24  H13  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P5M  SMILES            ACDLabs               12.01  "Oc1cc(cc(OC)c1O)c3[o+]c2cc(O)cc(O)c2cc3O"  
P5M  InChI             InChI                 1.03   "InChI=1S/C16H12O7/c1-22-14-3-7(2-11(19)15(14)21)16-12(20)6-9-10(18)4-8(17)5-13(9)23-16/h2-6H,1H3,(H4-,17,18,19,20,21)/p+1"  
P5M  InChIKey          InChI                 1.03   AFOLOMGWVXKIQL-UHFFFAOYSA-O  
P5M  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(cc(O)c1O)c2[o+]c3cc(O)cc(O)c3cc2O"  
P5M  SMILES            CACTVS                3.385  "COc1cc(cc(O)c1O)c2[o+]c3cc(O)cc(O)c3cc2O"  
P5M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "COc1cc(cc(c1O)O)c2c(cc3c(cc(cc3[o+]2)O)O)O"  
P5M  SMILES            "OpenEye OEToolkits"  1.7.6  "COc1cc(cc(c1O)O)c2c(cc3c(cc(cc3[o+]2)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P5M  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium"  
P5M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[3-methoxy-4,5-bis(oxidanyl)phenyl]chromenylium-3,5,7-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P5M  "Create component"  2014-10-15  PDBJ  
P5M  "Initial release"   2015-01-21  RCSB  
P5M  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     P5M
_pdbx_chem_comp_synonyms.name        Petunidin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
