data_MTM
#

_chem_comp.id                                   MTM
_chem_comp.name                                 "(3S,4R)-2-(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-5-[(METHYLSULFANYL)METHYL]PYRROLIDINE-3,4-DIOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H19 N5 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(1S)-1-(9-DEAZAADENIN-9-YL)-1,4,5-TRIDEOXY-1,4-IMINO-5-METHYLTHIO-D-RIBITOL"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-10-09
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       297.377
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MTM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1K27
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MTM  CS      CS    C  0  1  N  N  N  58.521  13.493  31.901   5.791  -2.134   0.141  CS      MTM   1  
MTM  "S5'"   S5*   S  0  1  N  N  N  58.589  14.539  30.423   4.459  -1.371  -0.825  "S5'"   MTM   2  
MTM  "C5'"   C5*   C  0  1  N  N  N  59.252  16.089  31.130   3.760  -0.259   0.426  "C5'"   MTM   3  
MTM  "C4'"   C4*   C  0  1  N  N  S  60.746  16.041  31.436   2.586   0.514  -0.178  "C4'"   MTM   4  
MTM  "N4'"   N4*   N  0  1  N  N  N  61.439  15.533  30.247   1.442  -0.395  -0.446  "N4'"   MTM   5  
MTM  "C2'"   C2*   C  0  1  N  N  S  61.980  17.843  30.396   0.554   1.716   0.359  "C2'"   MTM   6  
MTM  "O2'"   O2*   O  0  1  N  N  N  63.342  18.363  30.601   0.456   2.896  -0.442  "O2'"   MTM   7  
MTM  "C3'"   C3*   C  0  1  N  N  R  61.341  17.407  31.786   2.009   1.522   0.849  "C3'"   MTM   8  
MTM  "O3'"   O3*   O  0  1  N  N  N  62.374  17.284  32.851   2.725   2.758   0.813  "O3'"   MTM   9  
MTM  "C1'"   C1*   C  0  1  N  N  S  62.015  16.601  29.438   0.242   0.468  -0.487  "C1'"   MTM  10  
MTM  C9      C9    C  0  1  Y  N  N  61.139  16.703  28.093  -0.939  -0.267   0.091  C9      MTM  11  
MTM  C8      C8    C  0  1  Y  N  N  60.864  15.642  27.236  -0.892  -1.299   0.962  C8      MTM  12  
MTM  N7      N7    N  0  1  Y  N  N  60.124  15.957  26.190  -2.172  -1.694   1.242  N7      MTM  13  
MTM  C5      C5    C  0  1  Y  N  N  59.881  17.311  26.347  -3.028  -0.918   0.540  C5      MTM  14  
MTM  C6      C6    C  0  1  N  N  R  59.157  18.278  25.586  -4.536  -0.941   0.454  C6      MTM  15  
MTM  N6      N6    N  0  1  N  N  N  58.520  17.965  24.452  -4.971  -1.948  -0.522  N6      MTM  16  
MTM  N1      N1    N  0  1  N  N  N  59.132  19.586  26.067  -4.946   0.406   0.013  N1      MTM  17  
MTM  C2      C2    C  0  1  N  N  N  59.775  19.913  27.212  -4.183   1.099  -0.893  C2      MTM  18  
MTM  N3      N3    N  0  1  N  N  N  60.484  19.082  28.004  -2.893   0.929  -0.986  N3      MTM  19  
MTM  C4      C4    C  0  1  Y  N  N  60.494  17.795  27.509  -2.294  -0.002  -0.171  C4      MTM  20  
MTM  HCS1    1HCS  H  0  0  N  N  N  57.948  13.913  32.761   6.481  -1.362   0.483  HCS1    MTM  21  
MTM  HCS2    2HCS  H  0  0  N  N  N  58.117  12.548  31.470   5.366  -2.649   1.002  HCS2    MTM  22  
MTM  HCS3    3HCS  H  0  0  N  N  N  59.479  13.394  32.464   6.328  -2.850  -0.482  HCS3    MTM  23  
MTM  "H5'1"  1H5*  H  0  0  N  N  N  58.676  16.384  32.038   3.411  -0.845   1.277  "H5'1"  MTM  24  
MTM  "H5'2"  2H5*  H  0  0  N  N  N  59.015  16.954  30.468   4.525   0.442   0.757  "H5'2"  MTM  25  
MTM  "H4'"   H4*   H  0  1  N  N  N  60.880  15.384  32.327   2.892   1.026  -1.089  "H4'"   MTM  26  
MTM  HN4     HN4   H  0  1  N  N  N  60.824  14.940  29.689   1.572  -0.756  -1.379  HN4     MTM  27  
MTM  "H2'"   H2*   H  0  1  N  N  N  61.361  18.651  29.940  -0.127   1.778   1.207  "H2'"   MTM  28  
MTM  "HO'2"  2HO*  H  0  0  N  N  N  63.724  18.623  29.771   0.660   3.644   0.136  "HO'2"  MTM  29  
MTM  "H3'"   H3*   H  0  1  N  N  N  60.603  18.139  32.190   2.025   1.097   1.852  "H3'"   MTM  30  
MTM  H3T     H3T   H  0  1  N  N  N  62.743  18.132  33.068   2.268   3.362   1.415  H3T     MTM  31  
MTM  "H1'"   H1*   H  0  1  N  N  N  63.062  16.467  29.080   0.030   0.761  -1.516  "H1'"   MTM  32  
MTM  H8      H8    H  0  1  N  N  N  61.214  14.606  27.378   0.006  -1.740   1.368  H8      MTM  33  
MTM  H7      H7    H  0  1  N  N  N  59.820  15.321  25.453  -2.424  -2.411   1.844  H7      MTM  34  
MTM  H6      H6    H  0  1  N  N  N  58.818  17.571  24.793  -4.963  -1.159   1.433  H6      MTM  35  
MTM  H61     1H6   H  0  1  N  N  N  57.884  17.194  24.657  -5.980  -1.920  -0.538  H61     MTM  36  
MTM  H62     2H6   H  0  1  N  N  N  58.003  18.656  23.908  -4.658  -1.630  -1.426  H62     MTM  37  
MTM  HN1     HN1   H  0  1  N  N  N  58.158  19.874  26.155  -5.758   0.803   0.364  HN1     MTM  38  
MTM  H2      H2    H  0  1  N  N  N  59.715  20.967  27.533  -4.666   1.807  -1.551  H2      MTM  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MTM  CS     "S5'"   SING  N  N   1  
MTM  CS     HCS1    SING  N  N   2  
MTM  CS     HCS2    SING  N  N   3  
MTM  CS     HCS3    SING  N  N   4  
MTM  "S5'"  "C5'"   SING  N  N   5  
MTM  "C5'"  "C4'"   SING  N  N   6  
MTM  "C5'"  "H5'1"  SING  N  N   7  
MTM  "C5'"  "H5'2"  SING  N  N   8  
MTM  "C4'"  "N4'"   SING  N  N   9  
MTM  "C4'"  "C3'"   SING  N  N  10  
MTM  "C4'"  "H4'"   SING  N  N  11  
MTM  "N4'"  "C1'"   SING  N  N  12  
MTM  "N4'"  HN4     SING  N  N  13  
MTM  "C2'"  "O2'"   SING  N  N  14  
MTM  "C2'"  "C3'"   SING  N  N  15  
MTM  "C2'"  "C1'"   SING  N  N  16  
MTM  "C2'"  "H2'"   SING  N  N  17  
MTM  "O2'"  "HO'2"  SING  N  N  18  
MTM  "C3'"  "O3'"   SING  N  N  19  
MTM  "C3'"  "H3'"   SING  N  N  20  
MTM  "O3'"  H3T     SING  N  N  21  
MTM  "C1'"  C9      SING  N  N  22  
MTM  "C1'"  "H1'"   SING  N  N  23  
MTM  C9     C8      DOUB  Y  N  24  
MTM  C9     C4      SING  Y  N  25  
MTM  C8     N7      SING  Y  N  26  
MTM  C8     H8      SING  N  N  27  
MTM  N7     C5      SING  Y  N  28  
MTM  N7     H7      SING  N  N  29  
MTM  C5     C6      SING  N  N  30  
MTM  C5     C4      DOUB  Y  N  31  
MTM  C6     N6      SING  N  N  32  
MTM  C6     N1      SING  N  N  33  
MTM  C6     H6      SING  N  N  34  
MTM  N6     H61     SING  N  N  35  
MTM  N6     H62     SING  N  N  36  
MTM  N1     C2      SING  N  N  37  
MTM  N1     HN1     SING  N  N  38  
MTM  C2     N3      DOUB  N  N  39  
MTM  C2     H2      SING  N  N  40  
MTM  N3     C4      SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MTM  SMILES            ACDLabs               10.04  "OC3C(O)C(c2c1N=CNC(N)c1nc2)NC3CSC"  
MTM  SMILES_CANONICAL  CACTVS                3.341  "CSC[C@H]1N[C@H]([C@H](O)[C@@H]1O)c2c[nH]c3[C@H](N)NC=Nc23"  
MTM  SMILES            CACTVS                3.341  "CSC[CH]1N[CH]([CH](O)[CH]1O)c2c[nH]c3[CH](N)NC=Nc23"  
MTM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CSC[C@@H]1[C@H]([C@H]([C@@H](N1)c2c[nH]c3c2N=CNC3N)O)O"  
MTM  SMILES            "OpenEye OEToolkits"  1.5.0  "CSCC1C(C(C(N1)c2c[nH]c3c2N=CNC3N)O)O"  
MTM  InChI             InChI                 1.03   "InChI=1S/C12H19N5O2S/c1-20-3-6-10(18)11(19)8(17-6)5-2-14-9-7(5)15-4-16-12(9)13/h2,4,6,8,10-12,14,17-19H,3,13H2,1H3,(H,15,16)/t6-,8+,10-,11+,12?/m1/s1"  
MTM  InChIKey          InChI                 1.03   YLCQGEBEQIBOOJ-BOFBLULFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MTM  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3S,4R,5S)-2-[(4R)-4-amino-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl]-5-[(methylsulfanyl)methyl]pyrrolidine-3,4-diol"  
MTM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,4R,5S)-2-(4-amino-4,5-dihydro-3H-pyrrolo[4,5-d]pyrimidin-7-yl)-5-(methylsulfanylmethyl)pyrrolidine-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MTM  "Create component"   2001-10-09  RCSB  
MTM  "Modify descriptor"  2011-06-04  RCSB  
MTM  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MTM
_pdbx_chem_comp_synonyms.name        "(1S)-1-(9-DEAZAADENIN-9-YL)-1,4,5-TRIDEOXY-1,4-IMINO-5-METHYLTHIO-D-RIBITOL"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
