data_LAM
#

_chem_comp.id                                   LAM
_chem_comp.name                                 "4'-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H35 N O17 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4'-NITROPHENYL-3I-THIOLAMINARITRIOSIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-06-04
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       641.596
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LAM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LAM  C1      C1      C   0  1  N  N  S  35.821  25.646  26.370  -3.350  -1.423   0.607  C1      LAM   1  
LAM  C2      C2      C   0  1  N  N  R  36.898  24.874  25.408  -3.858  -2.719   1.243  C2      LAM   2  
LAM  O2      O2      O   0  1  N  N  N  37.991  25.846  25.057  -3.039  -3.053   2.366  O2      LAM   3  
LAM  C3      C3      C   0  1  N  N  S  36.212  24.275  24.064  -3.793  -3.847   0.209  C3      LAM   4  
LAM  O3      O3      O   0  1  N  N  N  37.143  23.355  23.383  -4.333  -5.044   0.771  O3      LAM   5  
LAM  C4      C4      C   0  1  N  N  S  34.857  23.470  24.426  -4.611  -3.443  -1.022  C4      LAM   6  
LAM  O4      O4      O   0  1  N  N  N  34.362  22.942  23.249  -4.498  -4.456  -2.023  O4      LAM   7  
LAM  C5      C5      C   0  1  N  N  R  33.842  24.579  25.119  -4.074  -2.119  -1.571  C5      LAM   8  
LAM  O5      O5      O   0  1  N  N  N  34.522  24.978  26.430  -4.135  -1.122  -0.549  O5      LAM   9  
LAM  C6      C6      C   0  1  N  N  N  32.347  24.224  25.494  -4.925  -1.679  -2.764  C6      LAM  10  
LAM  O6      O6      O   0  1  N  N  N  32.268  23.660  26.871  -4.355  -0.506  -3.348  O6      LAM  11  
LAM  C1A     C1A     C   0  1  N  N  S  35.790  28.360  30.952  -0.561   2.237   0.061  C1A     LAM  12  
LAM  C2A     C2A     C   0  1  N  N  S  36.493  27.402  29.749  -1.225   1.027   0.722  C2A     LAM  13  
LAM  C3A     C3A     C   0  1  N  N  S  35.377  26.357  29.067  -2.712   1.324   0.937  C3A     LAM  14  
LAM  C4A     C4A     C   0  1  N  N  R  34.610  25.439  30.180  -2.851   2.596   1.780  C4A     LAM  15  
LAM  C5A     C5A     C   0  1  N  N  R  33.991  26.423  31.455  -2.124   3.746   1.078  C5A     LAM  16  
LAM  C6A     C6A     C   0  1  N  N  N  33.516  25.567  32.737  -2.206   5.005   1.943  C6A     LAM  17  
LAM  O1A     O1A     O   0  1  N  N  N  36.778  29.368  31.560   0.838   1.989  -0.091  O1A     LAM  18  
LAM  O2A     O2A     O   0  1  N  N  N  37.205  28.224  28.640  -1.084  -0.116  -0.124  O2A     LAM  19  
LAM  O4A     O4A     O   0  1  N  N  N  33.573  24.525  29.434  -4.234   2.924   1.926  O4A     LAM  20  
LAM  S3A     S3A     S   0  1  N  N  N  36.331  25.200  28.048  -3.491  -0.066   1.803  S3A     LAM  21  
LAM  O5A     O5A     O   0  1  N  N  N  35.013  27.495  32.026  -0.753   3.391   0.882  O5A     LAM  22  
LAM  O6A     O6A     O   0  1  N  N  N  32.311  24.832  32.387  -1.630   6.106   1.238  O6A     LAM  23  
LAM  C1B     C1B     C   0  1  N  N  N       ?       ?       ?   3.726   1.913  -0.398  C1B     LAM  24  
LAM  C2B     C2B     C   0  1  N  N  N       ?       ?       ?   2.912   3.208  -0.343  C2B     LAM  25  
LAM  C3B     C3B     C   0  1  N  N  N       ?       ?       ?   1.513   2.947  -0.909  C3B     LAM  26  
LAM  C4B     C4B     C   0  1  N  N  N       ?       ?       ?   1.644   2.402  -2.335  C4B     LAM  27  
LAM  C5B     C5B     C   0  1  N  N  N       ?       ?       ?   2.507   1.138  -2.312  C5B     LAM  28  
LAM  C6B     C6B     C   0  1  N  N  N       ?       ?       ?   2.692   0.621  -3.740  C6B     LAM  29  
LAM  O1B     O1B     O   0  1  N  N  N       ?       ?       ?   3.104   0.924   0.425  O1B     LAM  30  
LAM  O2B     O2B     O   0  1  N  N  N       ?       ?       ?   2.805   3.648   1.012  O2B     LAM  31  
LAM  O4B     O4B     O   0  1  N  N  N       ?       ?       ?   0.347   2.086  -2.846  O4B     LAM  32  
LAM  O5B     O5B     O   0  1  N  N  N       ?       ?       ?   3.783   1.444  -1.746  O5B     LAM  33  
LAM  O6B     O6B     O   0  1  N  N  N       ?       ?       ?   3.398  -0.621  -3.709  O6B     LAM  34  
LAM  "C1'"   "C1'"   C   0  1  Y  N  N       ?       ?       ?   3.806  -0.217   0.657  "C1'"   LAM  35  
LAM  "C2'"   "C2'"   C   0  1  Y  N  N       ?       ?       ?   3.262  -1.219   1.447  "C2'"   LAM  36  
LAM  "C3'"   "C3'"   C   0  1  Y  N  N       ?       ?       ?   3.977  -2.377   1.681  "C3'"   LAM  37  
LAM  "C4'"   "C4'"   C   0  1  Y  N  N       ?       ?       ?   5.234  -2.539   1.128  "C4'"   LAM  38  
LAM  "C5'"   "C5'"   C   0  1  Y  N  N       ?       ?       ?   5.778  -1.541   0.340  "C5'"   LAM  39  
LAM  "C6'"   "C6'"   C   0  1  Y  N  N       ?       ?       ?   5.065  -0.383   0.099  "C6'"   LAM  40  
LAM  "N4'"   "N4'"   N   1  1  N  N  N       ?       ?       ?   5.998  -3.781   1.380  "N4'"   LAM  41  
LAM  "O'5"   "O4'1"  O   0  1  N  N  N       ?       ?       ?   5.519  -4.660   2.074  "O'5"   LAM  42  
LAM  "O'6"   "O4'2"  O  -1  1  N  N  N       ?       ?       ?   7.105  -3.924   0.894  "O'6"   LAM  43  
LAM  H11     H11     H   0  1  N  N  N  35.776  26.692  26.031  -2.307  -1.545   0.317  H11     LAM  44  
LAM  H21     H21     H   0  1  N  N  N  37.306  24.011  25.954  -4.889  -2.584   1.572  H21     LAM  45  
LAM  HO21    HO21    H   0  0  N  N  N  38.629  25.418  24.498  -3.029  -2.380   3.060  HO21    LAM  46  
LAM  H31     H31     H   0  1  N  N  N  35.970  25.119  23.402  -2.756  -4.016  -0.081  H31     LAM  47  
LAM  HO31    HO31    H   0  0  N  N  N  36.732  23.011  22.599  -3.867  -5.354   1.559  HO31    LAM  48  
LAM  H41     H41     H   0  1  N  N  N  34.999  22.633  25.126  -5.658  -3.325  -0.740  H41     LAM  49  
LAM  HO41    HO41    H   0  0  N  N  N  33.563  22.461  23.429  -4.816  -5.325  -1.742  HO41    LAM  50  
LAM  H51     H51     H   0  1  N  N  N  33.709  25.326  24.323  -3.040  -2.250  -1.890  H51     LAM  51  
LAM  H61     H61     H   0  1  N  N  N  31.738  25.139  25.445  -4.951  -2.477  -3.505  H61     LAM  52  
LAM  H62     H62     H   0  1  N  N  N  31.964  23.481  24.779  -5.938  -1.462  -2.427  H62     LAM  53  
LAM  HO61    HO61    H   0  0  N  N  N  31.364  23.453  27.078  -4.844  -0.170  -4.112  HO61    LAM  54  
LAM  H1A1    H1A1    H   0  0  N  N  N  35.023  28.978  30.462  -1.008   2.408  -0.918  H1A1    LAM  55  
LAM  H2A1    H2A1    H   0  0  N  N  N  37.270  26.815  30.260  -0.751   0.830   1.684  H2A1    LAM  56  
LAM  H3A1    H3A1    H   0  0  N  N  N  34.629  26.952  28.523  -3.198   1.472  -0.028  H3A1    LAM  57  
LAM  H4A1    H4A1    H   0  0  N  N  N  35.295  24.753  30.700  -2.409   2.431   2.763  H4A1    LAM  58  
LAM  H5A1    H5A1    H   0  0  N  N  N  33.149  26.929  30.961  -2.592   3.937   0.112  H5A1    LAM  59  
LAM  H6A1    H6A1    H   0  0  N  N  N  34.309  24.863  33.028  -3.250   5.224   2.168  H6A1    LAM  60  
LAM  H6A2    H6A2    H   0  0  N  N  N  33.307  26.244  33.578  -1.661   4.843   2.873  H6A2    LAM  61  
LAM  HA21    HA21    H   0  0  N  N  N  37.578  27.633  27.997  -0.166  -0.360  -0.306  HA21    LAM  62  
LAM  HA41    HA41    H   0  0  N  N  N  33.116  23.983  30.066  -4.396   3.720   2.450  HA41    LAM  63  
LAM  HA61    HA61    H   0  0  N  N  N  32.021  24.323  33.135  -1.648   6.940   1.728  HA61    LAM  64  
LAM  H1B1    H1B1    H   0  0  N  N  N       ?       ?       ?   4.737   2.103  -0.036  H1B1    LAM  65  
LAM  H2B1    H2B1    H   0  0  N  N  N       ?       ?       ?   3.408   3.975  -0.938  H2B1    LAM  66  
LAM  H3B1    H3B1    H   0  0  N  N  N       ?       ?       ?   0.946   3.878  -0.924  H3B1    LAM  67  
LAM  H4B1    H4B1    H   0  0  N  N  N       ?       ?       ?   2.114   3.152  -2.970  H4B1    LAM  68  
LAM  H5B1    H5B1    H   0  0  N  N  N       ?       ?       ?   2.016   0.373  -1.709  H5B1    LAM  69  
LAM  H6B1    H6B1    H   0  0  N  N  N       ?       ?       ?   1.716   0.472  -4.202  H6B1    LAM  70  
LAM  H6B2    H6B2    H   0  0  N  N  N       ?       ?       ?   3.262   1.348  -4.319  H6B2    LAM  71  
LAM  HB21    HB21    H   0  0  N  N  N       ?       ?       ?   3.656   3.828   1.435  HB21    LAM  72  
LAM  HB41    HB41    H   0  0  N  N  N       ?       ?       ?   0.355   1.735  -3.747  HB41    LAM  73  
LAM  HB61    HB61    H   0  0  N  N  N       ?       ?       ?   3.552  -1.008  -4.582  HB61    LAM  74  
LAM  "H2'1"  "H2'1"  H   0  0  N  N  N       ?       ?       ?   2.280  -1.093   1.879  "H2'1"  LAM  75  
LAM  "H3'1"  "H3'1"  H   0  0  N  N  N       ?       ?       ?   3.554  -3.158   2.296  "H3'1"  LAM  76  
LAM  "H5'1"  "H5'1"  H   0  0  N  N  N       ?       ?       ?   6.760  -1.670  -0.090  "H5'1"  LAM  77  
LAM  "H6'1"  "H6'1"  H   0  0  N  N  N       ?       ?       ?   5.489   0.394  -0.520  "H6'1"  LAM  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LAM  C1     C2      SING  N  N   1  
LAM  C1     O5      SING  N  N   2  
LAM  C1     S3A     SING  N  N   3  
LAM  C1     H11     SING  N  N   4  
LAM  C2     O2      SING  N  N   5  
LAM  C2     C3      SING  N  N   6  
LAM  C2     H21     SING  N  N   7  
LAM  O2     HO21    SING  N  N   8  
LAM  C3     O3      SING  N  N   9  
LAM  C3     C4      SING  N  N  10  
LAM  C3     H31     SING  N  N  11  
LAM  O3     HO31    SING  N  N  12  
LAM  C4     O4      SING  N  N  13  
LAM  C4     C5      SING  N  N  14  
LAM  C4     H41     SING  N  N  15  
LAM  O4     HO41    SING  N  N  16  
LAM  C5     O5      SING  N  N  17  
LAM  C5     C6      SING  N  N  18  
LAM  C5     H51     SING  N  N  19  
LAM  C6     O6      SING  N  N  20  
LAM  C6     H61     SING  N  N  21  
LAM  C6     H62     SING  N  N  22  
LAM  O6     HO61    SING  N  N  23  
LAM  C1A    C2A     SING  N  N  24  
LAM  C1A    O1A     SING  N  N  25  
LAM  C1A    O5A     SING  N  N  26  
LAM  C1A    H1A1    SING  N  N  27  
LAM  C2A    C3A     SING  N  N  28  
LAM  C2A    O2A     SING  N  N  29  
LAM  C2A    H2A1    SING  N  N  30  
LAM  C3A    C4A     SING  N  N  31  
LAM  C3A    S3A     SING  N  N  32  
LAM  C3A    H3A1    SING  N  N  33  
LAM  C4A    C5A     SING  N  N  34  
LAM  C4A    O4A     SING  N  N  35  
LAM  C4A    H4A1    SING  N  N  36  
LAM  C5A    C6A     SING  N  N  37  
LAM  C5A    O5A     SING  N  N  38  
LAM  C5A    H5A1    SING  N  N  39  
LAM  C6A    O6A     SING  N  N  40  
LAM  C6A    H6A1    SING  N  N  41  
LAM  C6A    H6A2    SING  N  N  42  
LAM  O1A    C3B     SING  N  N  43  
LAM  O2A    HA21    SING  N  N  44  
LAM  O4A    HA41    SING  N  N  45  
LAM  O6A    HA61    SING  N  N  46  
LAM  C1B    C2B     SING  N  N  47  
LAM  C1B    O1B     SING  N  N  48  
LAM  C1B    O5B     SING  N  N  49  
LAM  C1B    H1B1    SING  N  N  50  
LAM  C2B    C3B     SING  N  N  51  
LAM  C2B    O2B     SING  N  N  52  
LAM  C2B    H2B1    SING  N  N  53  
LAM  C3B    C4B     SING  N  N  54  
LAM  C3B    H3B1    SING  N  N  55  
LAM  C4B    C5B     SING  N  N  56  
LAM  C4B    O4B     SING  N  N  57  
LAM  C4B    H4B1    SING  N  N  58  
LAM  C5B    C6B     SING  N  N  59  
LAM  C5B    O5B     SING  N  N  60  
LAM  C5B    H5B1    SING  N  N  61  
LAM  C6B    O6B     SING  N  N  62  
LAM  C6B    H6B1    SING  N  N  63  
LAM  C6B    H6B2    SING  N  N  64  
LAM  O1B    "C1'"   SING  N  N  65  
LAM  O2B    HB21    SING  N  N  66  
LAM  O4B    HB41    SING  N  N  67  
LAM  O6B    HB61    SING  N  N  68  
LAM  "C1'"  "C2'"   DOUB  Y  N  69  
LAM  "C1'"  "C6'"   SING  Y  N  70  
LAM  "C2'"  "C3'"   SING  Y  N  71  
LAM  "C2'"  "H2'1"  SING  N  N  72  
LAM  "C3'"  "C4'"   DOUB  Y  N  73  
LAM  "C3'"  "H3'1"  SING  N  N  74  
LAM  "C4'"  "C5'"   SING  Y  N  75  
LAM  "C4'"  "N4'"   SING  N  N  76  
LAM  "C5'"  "C6'"   DOUB  Y  N  77  
LAM  "C5'"  "H5'1"  SING  N  N  78  
LAM  "C6'"  "H6'1"  SING  N  N  79  
LAM  "N4'"  "O'5"   DOUB  N  N  80  
LAM  "N4'"  "O'6"   SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LAM  SMILES            ACDLabs               11.02  "[O-][N+](=O)c4ccc(OC3OC(CO)C(O)C(OC2OC(CO)C(O)C(SC1OC(C(O)C(O)C1O)CO)C2O)C3O)cc4"  
LAM  InChI             InChI                 1.03   "InChI=1S/C24H35NO17S/c26-5-10-13(29)16(32)17(33)24(41-10)43-21-15(31)12(7-28)40-23(19(21)35)42-20-14(30)11(6-27)39-22(18(20)34)38-9-3-1-8(2-4-9)25(36)37/h1-4,10-24,26-35H,5-7H2/t10-,11?,12-,13-,14?,15-,16+,17-,18?,19-,20?,21+,22?,23+,24+/m1/s1"  
LAM  InChIKey          InChI                 1.03   VWNONHZCCMYIGR-VGNFVTAUSA-N  
LAM  SMILES_CANONICAL  CACTVS                3.385  "OCC1OC(Oc2ccc(cc2)[N+]([O-])=O)C(O)C(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](S[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H]3O)C1O"  
LAM  SMILES            CACTVS                3.385  "OCC1OC(Oc2ccc(cc2)[N+]([O-])=O)C(O)C(O[CH]3O[CH](CO)[CH](O)[CH](S[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH]3O)C1O"  
LAM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)S[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O"  
LAM  SMILES            "OpenEye OEToolkits"  1.7.5  "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)OC3C(C(C(C(O3)CO)O)SC4C(C(C(C(O4)CO)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LAM  "SYSTEMATIC NAME"  ACDLabs               11.02  "4-nitrophenyl beta-D-glucopyranosyl-(1->3)-3-thio-beta-D-glucopyranosyl-(1->3)hexopyranoside"  
LAM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2S,3R,4S,5S,6R)-2-[(2S,3S,4S,5R,6R)-2-[(2S,3S,4S,5S,6S)-3,5-dihydroxy-2-(hydroxymethyl)-6-(4-nitrophenoxy)oxan-4-yl]oxy-3,5-dihydroxy-6-(hydroxymethyl)oxan-4-yl]sulfanyl-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LAM  "Create component"    2001-06-04  RCSB  
LAM  "Modify descriptor"   2011-06-04  RCSB  
LAM  "Modify descriptor"   2012-01-05  RCSB  
LAM  "Modify coordinates"  2012-01-05  RCSB  
LAM  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LAM
_pdbx_chem_comp_synonyms.name        "4'-NITROPHENYL-3I-THIOLAMINARITRIOSIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
