data_GPM
#

_chem_comp.id                                   GPM
_chem_comp.name                                 "(1S)-1,5-anhydro-1-(phosphonomethyl)-D-glucitol"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H15 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "GLUCOPYRANOSYL-1-METHYL-PHOSPHONIC ACID; Alpha-1 phosphonomethylene-D-glucopyranose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       258.163
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GPM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5GPB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GPM  "GLUCOPYRANOSYL-1-METHYL-PHOSPHONIC ACID"     PDB  ?  
2  GPM  "Alpha-1 phosphonomethylene-D-glucopyranose"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GPM  C1    C1    C  0  1  N  N  S  33.465  22.976  27.684   0.016   0.832  -0.858  C1    GPM   1  
GPM  C2    C2    C  0  1  N  N  R  33.825  23.065  26.131  -1.322   1.567  -0.750  C2    GPM   2  
GPM  C3    C3    C  0  1  N  N  S  32.624  22.436  25.352  -2.153   0.937   0.371  C3    GPM   3  
GPM  C4    C4    C  0  1  N  N  S  32.512  20.965  25.781  -2.332  -0.557   0.081  C4    GPM   4  
GPM  C5    C5    C  0  1  N  N  R  32.268  20.830  27.320  -0.954  -1.210  -0.058  C5    GPM   5  
GPM  C6    C6    C  0  1  N  N  N  32.213  19.426  27.860  -1.124  -2.690  -0.408  C6    GPM   6  
GPM  C7    C7    C  0  1  N  N  N  32.147  23.586  28.292   0.796   0.998   0.448  C7    GPM   7  
GPM  O2    O2    O  0  1  N  N  N  34.087  24.363  25.573  -1.088   2.945  -0.453  O2    GPM   8  
GPM  O3    O3    O  0  1  N  N  N  32.865  22.548  23.961  -3.434   1.569   0.431  O3    GPM   9  
GPM  O4    O4    O  0  1  N  N  N  31.451  20.299  25.105  -3.044  -1.171   1.158  O4    GPM  10  
GPM  O5    O5    O  0  1  N  N  N  33.327  21.545  28.020  -0.222  -0.556  -1.097  O5    GPM  11  
GPM  O6    O6    O  0  1  N  N  N  33.449  18.753  27.549   0.155  -3.325  -0.424  O6    GPM  12  
GPM  P     P     P  0  1  N  N  N  31.621  25.295  28.255   2.449   0.251   0.268  P     GPM  13  
GPM  O1P   O1P   O  0  1  N  N  N  30.338  25.429  29.063   2.309  -1.159  -0.161  O1P   GPM  14  
GPM  O2P   O2P   O  0  1  N  N  N  32.824  26.028  28.823   3.290   1.067  -0.837  O2P   GPM  15  
GPM  O3P   O3P   O  0  1  N  N  N  31.301  25.542  26.783   3.221   0.309   1.679  O3P   GPM  16  
GPM  H1    H1    H  0  1  N  N  N  34.315  23.393  28.244   0.595   1.249  -1.682  H1    GPM  17  
GPM  H2    H2    H  0  1  N  N  N  34.700  22.420  25.965  -1.861   1.484  -1.694  H2    GPM  18  
GPM  H3    H3    H  0  1  N  N  N  31.702  22.966  25.634  -1.638   1.064   1.323  H3    GPM  19  
GPM  H4    H4    H  0  1  N  N  N  33.466  20.468  25.548  -2.891  -0.683  -0.846  H4    GPM  20  
GPM  H5    H5    H  0  1  N  N  N  31.308  21.318  27.543  -0.411  -1.118   0.882  H5    GPM  21  
GPM  H61   H61   H  0  1  N  N  N  32.074  19.456  28.951  -1.758  -3.169   0.338  H61   GPM  22  
GPM  H62   H62   H  0  1  N  N  N  31.373  18.886  27.398  -1.587  -2.780  -1.390  H62   GPM  23  
GPM  H71   H71   H  0  1  N  N  N  31.331  23.030  27.808   0.900   2.059   0.677  H71   GPM  24  
GPM  H72   H72   H  0  1  N  N  N  32.184  23.326  29.360   0.260   0.503   1.257  H72   GPM  25  
GPM  HO2   HO2   H  0  1  N  Y  N  34.287  24.276  24.648  -1.894   3.473  -0.371  HO2   GPM  26  
GPM  HO3   HO3   H  0  1  N  Y  N  32.138  22.167  23.482  -4.014   1.218   1.120  HO3   GPM  27  
GPM  HO4   HO4   H  0  1  N  Y  N  31.410  19.395  25.393  -3.193  -2.119   1.040  HO4   GPM  28  
GPM  HO6   HO6   H  0  1  N  Y  N  33.421  17.866  27.887   0.124  -4.268  -0.639  HO6   GPM  29  
GPM  HOP2  HOP2  H  0  0  N  N  N  32.575  26.472  29.625   3.421   2.000  -0.621  HOP2  GPM  30  
GPM  HOP3  HOP3  H  0  0  N  N  N  30.374  25.726  26.686   4.109  -0.073   1.658  HOP3  GPM  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GPM  C1   C2    SING  N  N   1  
GPM  C1   C7    SING  N  N   2  
GPM  C1   O5    SING  N  N   3  
GPM  C1   H1    SING  N  N   4  
GPM  C2   C3    SING  N  N   5  
GPM  C2   O2    SING  N  N   6  
GPM  C2   H2    SING  N  N   7  
GPM  C3   C4    SING  N  N   8  
GPM  C3   O3    SING  N  N   9  
GPM  C3   H3    SING  N  N  10  
GPM  C4   C5    SING  N  N  11  
GPM  C4   O4    SING  N  N  12  
GPM  C4   H4    SING  N  N  13  
GPM  C5   C6    SING  N  N  14  
GPM  C5   O5    SING  N  N  15  
GPM  C5   H5    SING  N  N  16  
GPM  C6   O6    SING  N  N  17  
GPM  C6   H61   SING  N  N  18  
GPM  C6   H62   SING  N  N  19  
GPM  C7   P     SING  N  N  20  
GPM  C7   H71   SING  N  N  21  
GPM  C7   H72   SING  N  N  22  
GPM  O2   HO2   SING  N  N  23  
GPM  O3   HO3   SING  N  N  24  
GPM  O4   HO4   SING  N  N  25  
GPM  O6   HO6   SING  N  N  26  
GPM  P    O1P   DOUB  N  N  27  
GPM  P    O2P   SING  N  N  28  
GPM  P    O3P   SING  N  N  29  
GPM  O2P  HOP2  SING  N  N  30  
GPM  O3P  HOP3  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GPM  SMILES            ACDLabs               12.01  "O=P(O)(O)CC1OC(C(O)C(O)C1O)CO"  
GPM  InChI             InChI                 1.03   "InChI=1S/C7H15O8P/c8-1-3-5(9)7(11)6(10)4(15-3)2-16(12,13)14/h3-11H,1-2H2,(H2,12,13,14)/t3-,4-,5-,6+,7+/m1/s1"  
GPM  InChIKey          InChI                 1.03   XRMRHVWWWWFMKR-OVHBTUCOSA-N  
GPM  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@H](C[P](O)(O)=O)[C@H](O)[C@@H](O)[C@@H]1O"  
GPM  SMILES            CACTVS                3.370  "OC[CH]1O[CH](C[P](O)(O)=O)[CH](O)[CH](O)[CH]1O"  
GPM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)CP(=O)(O)O)O)O)O)O"  
GPM  SMILES            "OpenEye OEToolkits"  1.7.6  "C(C1C(C(C(C(O1)CP(=O)(O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GPM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S)-1,5-anhydro-1-(phosphonomethyl)-D-glucitol"  
GPM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]methylphosphonic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GPM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GPM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GPM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GPM  "Create component"          1999-07-08  RCSB  
GPM  "Modify descriptor"         2011-06-04  RCSB  
GPM  "Modify synonyms"           2013-09-10  RCSB  
GPM  "Other modification"        2020-07-03  RCSB  
GPM  "Modify name"               2020-07-17  RCSB  
GPM  "Modify synonyms"           2020-07-17  RCSB  
GPM  "Modify linking type"       2020-07-17  RCSB  
GPM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
