data_GGM
#

_chem_comp.id                                   GGM
_chem_comp.name                                 "3'-O-(N-methylanthraniloyl)-beta:gamma-imidoguanosine-5'-triphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H24 N7 O14 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        MANT-GMPPNP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-08-03
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       655.343
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GGM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3B1V
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GGM  N1      N1      N  0  1  N  N  N  6.008  29.682  33.117  -4.685   5.816   0.458  N1      GGM   1  
GGM  C2      C2      C  0  1  N  N  N  5.923  29.085  34.388  -4.993   4.603   0.998  C2      GGM   2  
GGM  N2      N2      N  0  1  N  N  N  6.293  29.757  35.493  -6.158   4.467   1.710  N2      GGM   3  
GGM  N3      N3      N  0  1  N  N  N  5.475  27.823  34.475  -4.206   3.560   0.856  N3      GGM   4  
GGM  C4      C4      C  0  1  Y  N  N  5.115  27.120  33.372  -3.060   3.646   0.170  C4      GGM   5  
GGM  C5      C5      C  0  1  Y  N  N  5.165  27.655  32.101  -2.689   4.865  -0.408  C5      GGM   6  
GGM  C6      C6      C  0  1  N  N  N  5.626  28.958  31.967  -3.545   5.980  -0.248  C6      GGM   7  
GGM  O6      O6      O  0  1  N  N  N  5.693  29.474  30.860  -3.261   7.061  -0.735  O6      GGM   8  
GGM  N7      N7      N  0  1  Y  N  N  4.730  26.713  31.247  -1.502   4.668  -1.033  N7      GGM   9  
GGM  C8      C8      C  0  1  Y  N  N  4.410  25.629  31.943  -1.133   3.431  -0.877  C8      GGM  10  
GGM  N9      N9      N  0  1  Y  N  N  4.639  25.887  33.233  -2.065   2.760  -0.139  N9      GGM  11  
GGM  CA      CA      C  0  1  N  N  N  3.799  24.290  37.393  -3.832  -2.543  -0.248  CA      GGM  12  
GGM  OA      OA      O  0  1  N  N  N  2.715  24.616  38.565  -3.988  -2.539  -1.453  OA      GGM  13  
GGM  PA      PA      P  0  1  N  N  N  3.560  20.837  31.693   3.030  -1.344  -0.887  PA      GGM  14  
GGM  PB      PB      P  0  1  N  N  N  5.239  19.168  29.980   5.814  -0.595  -0.203  PB      GGM  15  
GGM  PG      PG      P  0  1  N  N  N  5.673  16.293  30.338   8.177   0.208   1.009  PG      GGM  16  
GGM  "C1'"   "C1'"   C  0  1  N  N  R  4.489  25.068  34.410  -2.009   1.349   0.250  "C1'"   GGM  17  
GGM  O1A     O1A     O  0  1  N  N  N  2.733  21.557  30.719   3.153  -0.726  -2.226  O1A     GGM  18  
GGM  O1B     O1B     O  0  1  N  N  N  6.404  19.620  29.127   6.001   0.530  -1.339  O1B     GGM  19  
GGM  O1G     O1G     O  0  1  N  N  N  4.251  16.003  30.007   8.368   1.248  -0.026  O1G     GGM  20  
GGM  "C2'"   "C2'"   C  0  1  N  N  R  3.317  24.227  34.674  -2.797   0.473  -0.757  "C2'"   GGM  21  
GGM  "O2'"   "O2'"   O  0  1  N  N  N  2.247  25.011  35.294  -4.181   0.413  -0.406  "O2'"   GGM  22  
GGM  O2A     O2A     O  0  1  N  N  N  2.963  19.675  32.394   3.080  -2.947  -1.029  O2A     GGM  23  
GGM  O2B     O2B     O  0  1  N  N  N  3.967  18.855  29.279   6.455  -1.854  -0.644  O2B     GGM  24  
GGM  O2G     O2G     O  0  1  N  N  N  6.668  16.168  29.059   8.825   0.706   2.397  O2G     GGM  25  
GGM  "C3'"   "C3'"   C  0  1  N  N  S  3.402  22.910  35.270  -2.122  -0.909  -0.582  "C3'"   GGM  26  
GGM  "O3'"   "O3'"   O  0  1  N  N  N  3.380  23.159  36.709  -2.901  -1.746   0.314  "O3'"   GGM  27  
GGM  O3A     O3A     O  0  1  N  N  N  5.028  20.346  31.050   4.245  -0.850   0.047  O3A     GGM  28  
GGM  N3B     N3B     N  0  1  N  N  N  5.674  17.866  30.942   6.532  -0.071   1.227  N3B     GGM  29  
GGM  O3G     O3G     O  0  1  N  N  N  6.166  15.290  31.465   8.895  -1.155   0.540  O3G     GGM  30  
GGM  "C4'"   "C4'"   C  0  1  N  N  R  4.888  22.685  34.822  -0.751  -0.584   0.041  "C4'"   GGM  31  
GGM  "O4'"   "O4'"   O  0  1  N  N  N  5.482  23.972  34.362  -0.659   0.846   0.149  "O4'"   GGM  32  
GGM  "C5'"   "C5'"   C  0  1  N  N  N  5.076  21.724  33.647   0.368  -1.110  -0.861  "C5'"   GGM  33  
GGM  "O5'"   "O5'"   O  0  1  N  N  N  4.068  21.945  32.683   1.630  -0.908  -0.221  "O5'"   GGM  34  
GGM  CA1     CA1     C  0  1  Y  N  N  5.146  25.103  37.499  -4.660  -3.418   0.599  CA1     GGM  35  
GGM  NA1     NA1     N  0  1  N  N  N  4.024  27.240  37.333  -5.969  -4.078  -1.327  NA1     GGM  36  
GGM  CA2     CA2     C  0  1  Y  N  N  5.164  26.530  37.464  -5.707  -4.163   0.033  CA2     GGM  37  
GGM  CA3     CA3     C  0  1  Y  N  N  6.401  27.215  37.561  -6.481  -4.986   0.843  CA3     GGM  38  
GGM  CA4     CA4     C  0  1  Y  N  N  7.609  26.506  37.688  -6.219  -5.068   2.195  CA4     GGM  39  
GGM  CA5     CA5     C  0  1  Y  N  N  7.585  25.100  37.724  -5.185  -4.334   2.757  CA5     GGM  40  
GGM  CA6     CA6     C  0  1  Y  N  N  6.363  24.411  37.635  -4.404  -3.518   1.970  CA6     GGM  41  
GGM  CAM     CAM     C  0  1  N  N  N  3.745  28.465  38.141  -7.136  -4.758  -1.893  CAM     GGM  42  
GGM  HN1     HN1     H  0  1  N  N  N  6.340  30.621  33.028  -5.290   6.565   0.578  HN1     GGM  43  
GGM  HN2     HN2     H  0  1  N  N  N  6.235  29.316  36.389  -6.749   5.227   1.823  HN2     GGM  44  
GGM  HN2A    HN2A    H  0  0  N  N  N  6.626  30.697  35.419  -6.391   3.609   2.100  HN2A    GGM  45  
GGM  H8      H8      H  0  1  N  N  N  4.031  24.702  31.538  -0.224   3.000  -1.271  H8      GGM  46  
GGM  "H1'"   "H1'"   H  0  1  N  N  N  4.515  25.887  35.144  -2.396   1.215   1.260  "H1'"   GGM  47  
GGM  HO1B    HO1B    H  0  0  N  N  N  6.140  19.640  28.215   5.605   1.384  -1.117  HO1B    GGM  48  
GGM  "H2'"   "H2'"   H  0  1  N  N  N  3.116  23.912  33.639  -2.671   0.842  -1.775  "H2'"   GGM  49  
GGM  "HO2'"  "HO2'"  H  0  0  N  N  N  1.497  24.451  35.457  -4.626   1.271  -0.413  "HO2'"  GGM  50  
GGM  HO2A    HO2A    H  0  0  N  N  N  2.070  19.550  32.096   3.004  -3.419  -0.189  HO2A    GGM  51  
GGM  HO2G    HO2G    H  0  0  N  N  N  6.167  15.924  28.290   9.774   0.886   2.345  HO2G    GGM  52  
GGM  "H3'"   "H3'"   H  0  1  N  N  N  2.670  22.125  35.029  -1.998  -1.398  -1.548  "H3'"   GGM  53  
GGM  HN3B    HN3B    H  0  0  N  N  N  6.615  18.045  31.230   6.070   0.752   1.584  HN3B    GGM  54  
GGM  HO3G    HO3G    H  0  0  N  N  N  5.455  14.706  31.703   8.810  -1.882   1.172  HO3G    GGM  55  
GGM  "H4'"   "H4'"   H  0  1  N  N  N  5.369  22.258  35.714  -0.676  -1.036   1.030  "H4'"   GGM  56  
GGM  "H5'"   "H5'"   H  0  1  N  N  N  6.062  21.895  33.190   0.219  -2.175  -1.042  "H5'"   GGM  57  
GGM  "H5'A"  "H5'A"  H  0  0  N  N  N  5.013  20.687  34.010   0.352  -0.575  -1.810  "H5'A"  GGM  58  
GGM  HNA1    HNA1    H  0  0  N  N  N  4.008  27.542  36.380  -5.378  -3.569  -1.904  HNA1    GGM  59  
GGM  HA3     HA3     H  0  1  N  N  N  6.416  28.295  37.537  -7.288  -5.561   0.414  HA3     GGM  60  
GGM  HA4     HA4     H  0  1  N  N  N  8.547  27.037  37.757  -6.823  -5.708   2.821  HA4     GGM  61  
GGM  HA5     HA5     H  0  1  N  N  N  8.508  24.548  37.820  -4.990  -4.406   3.816  HA5     GGM  62  
GGM  HA6     HA6     H  0  1  N  N  N  6.358  23.332  37.672  -3.598  -2.951   2.411  HA6     GGM  63  
GGM  HAM     HAM     H  0  1  N  N  N  2.761  28.872  37.863  -7.059  -5.829  -1.706  HAM     GGM  64  
GGM  HAMA    HAMA    H  0  0  N  N  N  3.746  28.207  39.210  -8.043  -4.373  -1.426  HAMA    GGM  65  
GGM  HAMB    HAMB    H  0  0  N  N  N  4.522  29.219  37.944  -7.176  -4.579  -2.967  HAMB    GGM  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GGM  N1     C2      SING  N  N   1  
GGM  N1     C6      SING  N  N   2  
GGM  C2     N2      SING  N  N   3  
GGM  C2     N3      DOUB  N  N   4  
GGM  N3     C4      SING  N  N   5  
GGM  C4     C5      DOUB  Y  N   6  
GGM  C4     N9      SING  Y  N   7  
GGM  C5     C6      SING  N  N   8  
GGM  C5     N7      SING  Y  N   9  
GGM  C6     O6      DOUB  N  N  10  
GGM  N7     C8      DOUB  Y  N  11  
GGM  C8     N9      SING  Y  N  12  
GGM  N9     "C1'"   SING  N  N  13  
GGM  CA     OA      DOUB  N  N  14  
GGM  CA     "O3'"   SING  N  N  15  
GGM  CA     CA1     SING  N  N  16  
GGM  PA     O1A     DOUB  N  N  17  
GGM  PA     O2A     SING  N  N  18  
GGM  PA     O3A     SING  N  N  19  
GGM  PA     "O5'"   SING  N  N  20  
GGM  PB     O1B     SING  N  N  21  
GGM  PB     O2B     DOUB  N  N  22  
GGM  PB     O3A     SING  N  N  23  
GGM  PB     N3B     SING  N  N  24  
GGM  PG     O1G     DOUB  N  N  25  
GGM  PG     O2G     SING  N  N  26  
GGM  PG     N3B     SING  N  N  27  
GGM  PG     O3G     SING  N  N  28  
GGM  "C1'"  "C2'"   SING  N  N  29  
GGM  "C1'"  "O4'"   SING  N  N  30  
GGM  "C2'"  "O2'"   SING  N  N  31  
GGM  "C2'"  "C3'"   SING  N  N  32  
GGM  "C3'"  "O3'"   SING  N  N  33  
GGM  "C3'"  "C4'"   SING  N  N  34  
GGM  "C4'"  "O4'"   SING  N  N  35  
GGM  "C4'"  "C5'"   SING  N  N  36  
GGM  "C5'"  "O5'"   SING  N  N  37  
GGM  CA1    CA2     DOUB  Y  N  38  
GGM  CA1    CA6     SING  Y  N  39  
GGM  NA1    CA2     SING  N  N  40  
GGM  NA1    CAM     SING  N  N  41  
GGM  CA2    CA3     SING  Y  N  42  
GGM  CA3    CA4     DOUB  Y  N  43  
GGM  CA4    CA5     SING  Y  N  44  
GGM  CA5    CA6     DOUB  Y  N  45  
GGM  N1     HN1     SING  N  N  46  
GGM  N2     HN2     SING  N  N  47  
GGM  N2     HN2A    SING  N  N  48  
GGM  C8     H8      SING  N  N  49  
GGM  "C1'"  "H1'"   SING  N  N  50  
GGM  O1B    HO1B    SING  N  N  51  
GGM  "C2'"  "H2'"   SING  N  N  52  
GGM  "O2'"  "HO2'"  SING  N  N  53  
GGM  O2A    HO2A    SING  N  N  54  
GGM  O2G    HO2G    SING  N  N  55  
GGM  "C3'"  "H3'"   SING  N  N  56  
GGM  N3B    HN3B    SING  N  N  57  
GGM  O3G    HO3G    SING  N  N  58  
GGM  "C4'"  "H4'"   SING  N  N  59  
GGM  "C5'"  "H5'"   SING  N  N  60  
GGM  "C5'"  "H5'A"  SING  N  N  61  
GGM  NA1    HNA1    SING  N  N  62  
GGM  CA3    HA3     SING  N  N  63  
GGM  CA4    HA4     SING  N  N  64  
GGM  CA5    HA5     SING  N  N  65  
GGM  CA6    HA6     SING  N  N  66  
GGM  CAM    HAM     SING  N  N  67  
GGM  CAM    HAMA    SING  N  N  68  
GGM  CAM    HAMB    SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GGM  SMILES            ACDLabs               12.01  "O=P(O)(O)NP(=O)(O)OP(=O)(O)OCC4OC(n2cnc1c2N=C(N)NC1=O)C(O)C4OC(=O)c3ccccc3NC"  
GGM  InChI             InChI                 1.03   "InChI=1S/C18H24N7O14P3/c1-20-9-5-3-2-4-8(9)17(28)38-13-10(6-36-42(34,35)39-41(32,33)24-40(29,30)31)37-16(12(13)26)25-7-21-11-14(25)22-18(19)23-15(11)27/h2-5,7,10,12-13,16,20,26H,6H2,1H3,(H,34,35)(H3,19,22,23,27)(H4,24,29,30,31,32,33)/t10-,12-,13-,16-/m1/s1"  
GGM  InChIKey          InChI                 1.03   ZGTKZICAFACDSP-XNIJJKJLSA-N  
GGM  SMILES_CANONICAL  CACTVS                3.370  "CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)n3cnc4C(=O)NC(=Nc34)N"  
GGM  SMILES            CACTVS                3.370  "CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)n3cnc4C(=O)NC(=Nc34)N"  
GGM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3N=C(NC4=O)N)CO[P@](=O)(O)O[P@](=O)(NP(=O)(O)O)O"  
GGM  SMILES            "OpenEye OEToolkits"  1.7.2  "CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3N=C(NC4=O)N)COP(=O)(O)OP(=O)(NP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GGM  "SYSTEMATIC NAME"  ACDLabs               12.01  "5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]-3'-O-[2-(methylamino)benzoyl]guanosine"  
GGM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "[[[[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3-[2-(methylamino)phenyl]carbonyloxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GGM  "Create component"  2011-08-03  PDBJ  
GGM  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GGM
_pdbx_chem_comp_synonyms.name        MANT-GMPPNP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
