data_G2M
# 
_chem_comp.id                                    G2M 
_chem_comp.name                                  "2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(1-methyl-1-phosphonoethyl)phosphoryl]oxy}phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H22 N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.261 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G2M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JPR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G2M N1     N1     N 0 1 N N N 9.554  8.887  8.054  -7.881 2.226  0.151  N1     G2M 1  
G2M C2     C2     C 0 1 N N N 8.287  8.992  7.519  -7.462 1.538  1.251  C2     G2M 2  
G2M N2     N2     N 0 1 N N N 8.178  9.562  6.306  -8.211 1.596  2.399  N2     G2M 3  
G2M N3     N3     N 0 1 N N N 7.205  8.585  8.132  -6.360 0.822  1.243  N3     G2M 4  
G2M C4     C4     C 0 1 Y N N 7.473  8.092  9.356  -5.598 0.737  0.146  C4     G2M 5  
G2M C5     C5     C 0 1 Y N N 8.686  7.969  9.992  -5.975 1.420  -1.015 C5     G2M 6  
G2M C6     C6     C 0 1 N N N 9.848  8.373  9.313  -7.163 2.188  -0.993 C6     G2M 7  
G2M O6     O6     O 0 1 N N N 11.016 8.307  9.692  -7.530 2.799  -1.982 O6     G2M 8  
G2M N7     N7     N 0 1 Y N N 8.526  7.426  11.260 -5.036 1.161  -1.957 N7     G2M 9  
G2M C8     C8     C 0 1 Y N N 7.243  7.214  11.359 -4.126 0.379  -1.455 C8     G2M 10 
G2M N9     N9     N 0 1 Y N N 6.552  7.570  10.222 -4.431 0.089  -0.157 N9     G2M 11 
G2M PA     PA     P 0 1 N N N 4.985  5.068  14.565 1.975  -1.845 -0.549 PA     G2M 12 
G2M PB     PB     P 0 1 N N N 4.038  2.645  13.721 4.338  -0.060 -0.423 PB     G2M 13 
G2M PG     PG     P 0 1 N N N 3.950  1.120  16.497 6.537  1.797  0.337  PG     G2M 14 
G2M "C1'"  "C1'"  C 0 1 N N R 5.134  7.380  9.937  -3.651 -0.761 0.747  "C1'"  G2M 15 
G2M O1A    O1A    O 0 1 N N N 3.894  5.011  15.564 1.835  -1.618 -2.005 O1A    G2M 16 
G2M O1B    O1B    O 0 1 N N N 4.118  1.956  12.147 4.085  0.701  -1.819 O1B    G2M 17 
G2M O1G    O1G    O 0 1 N N N 3.474  2.715  16.930 6.983  2.948  1.370  O1G    G2M 18 
G2M "C2'"  "C2'"  C 0 1 N N N 4.833  5.933  9.540  -4.210 -2.197 0.728  "C2'"  G2M 19 
G2M O2A    O2A    O 0 1 N N N 6.606  5.256  15.110 2.581  -3.315 -0.292 O2A    G2M 20 
G2M O2B    O2B    O 0 1 N N N 2.720  2.996  14.299 5.366  -1.107 -0.611 O2B    G2M 21 
G2M O2G    O2G    O 0 1 N N N 4.992  0.238  17.543 7.625  0.610  0.354  O2G    G2M 22 
G2M "C3'"  "C3'"  C 0 1 N N S 4.412  5.325  10.862 -3.009 -3.065 0.280  "C3'"  G2M 23 
G2M "O3'"  "O3'"  O 0 1 N N N 3.587  4.165  10.662 -2.951 -4.281 1.029  "O3'"  G2M 24 
G2M O3A    O3A    O 0 1 N N N 4.916  3.873  13.651 2.965  -0.739 0.074  O3A    G2M 25 
G2M C3B    C3B    C 0 1 N N N 4.823  1.369  14.859 4.910  1.137  0.828  C3B    G2M 26 
G2M C3B2   2C3B   C 0 0 N N N 6.235  1.842  15.175 3.904  2.285  0.932  2C3B   G2M 27 
G2M C3B3   3C3B   C 0 0 N N N 4.837  0.020  14.128 5.030  0.440  2.184  3C3B   G2M 28 
G2M O3G    O3G    O 0 1 N N N 2.729  0.322  16.261 6.448  2.365  -1.027 O3G    G2M 29 
G2M "C4'"  "C4'"  C 0 1 N N R 3.620  6.477  11.469 -1.804 -2.150 0.616  "C4'"  G2M 30 
G2M "O4'"  "O4'"  O 0 1 N N N 4.390  7.650  11.124 -2.287 -0.827 0.301  "O4'"  G2M 31 
G2M "C5'"  "C5'"  C 0 1 N N N 3.416  6.430  12.963 -0.598 -2.506 -0.256 "C5'"  G2M 32 
G2M "O5'"  "O5'"  O 0 1 N N N 4.671  6.326  13.637 0.531  -1.730 0.153  "O5'"  G2M 33 
G2M HN1    HN1    H 0 1 N N N 10.320 9.204  7.494  -8.701 2.743  0.189  HN1    G2M 34 
G2M HN2    HN2    H 0 1 N N N 7.278  9.670  5.884  -9.027 2.120  2.420  HN2    G2M 35 
G2M HN2A   HN2A   H 0 0 N N N 8.997  9.878  5.826  -7.926 1.112  3.189  HN2A   G2M 36 
G2M H8     H8     H 0 1 N N N 6.772  6.803  12.240 -3.260 0.013  -1.986 H8     G2M 37 
G2M "H1'"  "H1'"  H 0 1 N N N 4.861  8.053  9.111  -3.693 -0.360 1.760  "H1'"  G2M 38 
G2M "H2'"  "H2'"  H 0 1 N N N 4.036  5.869  8.784  -4.542 -2.490 1.724  "H2'"  G2M 39 
G2M "H2'A" "H2'A" H 0 0 N N N 5.714  5.429  9.116  -5.028 -2.279 0.013  "H2'A" G2M 40 
G2M "H3'"  "H3'"  H 0 1 N N N 5.243  4.968  11.487 -3.055 -3.271 -0.789 "H3'"  G2M 41 
G2M "HO3'" "HO3'" H 0 0 N N N 3.338  3.804  11.505 -3.727 -4.846 0.921  "HO3'" G2M 42 
G2M HC3B   HC3B   H 0 0 N N N 6.725  1.116  15.841 2.932  1.891  1.226  HC3B   G2M 43 
G2M HC3A   HC3A   H 0 0 N N N 6.810  1.929  14.241 4.247  3.001  1.680  HC3A   G2M 44 
G2M HC3C   HC3C   H 0 0 N N N 6.191  2.823  15.671 3.819  2.782  -0.034 HC3C   G2M 45 
G2M HC3D   HC3D   H 0 0 N N N 5.293  -0.744 14.775 5.747  -0.379 2.109  HC3D   G2M 46 
G2M HC3E   HC3E   H 0 0 N N N 3.806  -0.275 13.883 5.373  1.155  2.931  HC3E   G2M 47 
G2M HC3F   HC3F   H 0 0 N N N 5.422  0.111  13.201 4.058  0.045  2.477  HC3F   G2M 48 
G2M "H4'"  "H4'"  H 0 1 N N N 2.594  6.449  11.074 -1.549 -2.224 1.673  "H4'"  G2M 49 
G2M "H5'"  "H5'"  H 0 1 N N N 2.909  7.351  13.286 -0.369 -3.566 -0.145 "H5'"  G2M 50 
G2M "H5'A" "H5'A" H 0 0 N N N 2.798  5.555  13.215 -0.828 -2.291 -1.299 "H5'A" G2M 51 
G2M H19    H19    H 0 1 N N N 3.240  1.869  11.794 3.421  1.402  -1.770 H19    G2M 52 
G2M H20    H20    H 0 1 N N N 2.526  2.773  16.933 7.842  3.345  1.170  H20    G2M 53 
G2M H21    H21    H 0 1 N N N 6.618  5.305  16.059 2.700  -3.533 0.643  H21    G2M 54 
G2M H22    H22    H 0 1 N N N 4.587  -0.591 17.769 7.736  0.191  1.218  H22    G2M 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G2M N1    C2     SING N N 1  
G2M N1    C6     SING N N 2  
G2M N1    HN1    SING N N 3  
G2M C2    N2     SING N N 4  
G2M C2    N3     DOUB N N 5  
G2M N2    HN2    SING N N 6  
G2M N2    HN2A   SING N N 7  
G2M N3    C4     SING N N 8  
G2M C4    C5     DOUB Y N 9  
G2M C4    N9     SING Y N 10 
G2M C5    C6     SING N N 11 
G2M C5    N7     SING Y N 12 
G2M C6    O6     DOUB N N 13 
G2M N7    C8     DOUB Y N 14 
G2M C8    N9     SING Y N 15 
G2M C8    H8     SING N N 16 
G2M N9    "C1'"  SING N N 17 
G2M PA    O1A    DOUB N N 18 
G2M PA    O2A    SING N N 19 
G2M PA    O3A    SING N N 20 
G2M PA    "O5'"  SING N N 21 
G2M PB    O1B    SING N N 22 
G2M PB    O2B    DOUB N N 23 
G2M PB    O3A    SING N N 24 
G2M PB    C3B    SING N N 25 
G2M PG    O1G    SING N N 26 
G2M PG    O2G    SING N N 27 
G2M PG    C3B    SING N N 28 
G2M PG    O3G    DOUB N N 29 
G2M "C1'" "C2'"  SING N N 30 
G2M "C1'" "O4'"  SING N N 31 
G2M "C1'" "H1'"  SING N N 32 
G2M "C2'" "C3'"  SING N N 33 
G2M "C2'" "H2'"  SING N N 34 
G2M "C2'" "H2'A" SING N N 35 
G2M "C3'" "O3'"  SING N N 36 
G2M "C3'" "C4'"  SING N N 37 
G2M "C3'" "H3'"  SING N N 38 
G2M "O3'" "HO3'" SING N N 39 
G2M C3B   C3B2   SING N N 40 
G2M C3B   C3B3   SING N N 41 
G2M C3B2  HC3B   SING N N 42 
G2M C3B2  HC3A   SING N N 43 
G2M C3B2  HC3C   SING N N 44 
G2M C3B3  HC3D   SING N N 45 
G2M C3B3  HC3E   SING N N 46 
G2M C3B3  HC3F   SING N N 47 
G2M "C4'" "O4'"  SING N N 48 
G2M "C4'" "C5'"  SING N N 49 
G2M "C4'" "H4'"  SING N N 50 
G2M "C5'" "O5'"  SING N N 51 
G2M "C5'" "H5'"  SING N N 52 
G2M "C5'" "H5'A" SING N N 53 
G2M O1B   H19    SING N N 54 
G2M O1G   H20    SING N N 55 
G2M O2A   H21    SING N N 56 
G2M O2G   H22    SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G2M SMILES           ACDLabs              11.02 "O=P(O)(O)C(C)(C)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" 
G2M SMILES_CANONICAL CACTVS               3.352 "CC(C)([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3C(=O)NC(=Nc23)N" 
G2M SMILES           CACTVS               3.352 "CC(C)([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3C(=O)NC(=Nc23)N" 
G2M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)([P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2N=C(NC3=O)N)O)P(=O)(O)O" 
G2M SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C)(P(=O)(O)O)P(=O)(O)OP(=O)(O)OCC1C(CC(O1)n2cnc3c2N=C(NC3=O)N)O" 
G2M InChI            InChI                1.03  
"InChI=1S/C13H22N5O12P3/c1-13(2,31(21,22)23)32(24,25)30-33(26,27)28-4-7-6(19)3-8(29-7)18-5-15-9-10(18)16-12(14)17-11(9)20/h5-8,19H,3-4H2,1-2H3,(H,24,25)(H,26,27)(H2,21,22,23)(H3,14,16,17,20)/t6-,7+,8+/m0/s1" 
G2M InChIKey         InChI                1.03  NTNZTLKYOXRXOS-XLPZGREQSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G2M "SYSTEMATIC NAME" ACDLabs              11.02 "2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(2-phosphonopropan-2-yl)phosphoryl]oxy}phosphoryl]guanosine"                                                  
G2M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "2-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]propan-2-ylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G2M "Create component"  2009-09-14 RCSB 
G2M "Modify descriptor" 2011-06-04 RCSB 
# 
