data_F9M
# 
_chem_comp.id                                    F9M 
_chem_comp.name                                  "[6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H23 F3 N8 O S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-04 
_chem_comp.pdbx_modified_date                    2024-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        572.628 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F9M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JVI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F9M N12 N1  N 0 1 N N N N N N 117.047 169.430 143.214 3.283  -0.416 -0.955 N12 F9M 1  
F9M C15 C1  C 0 1 N N S N N N 119.067 174.484 140.217 -2.956 0.336  -0.514 C15 F9M 2  
F9M C17 C2  C 0 1 N N N N N N 119.160 175.212 138.890 -4.024 -0.239 0.446  C17 F9M 3  
F9M C20 C3  C 0 1 N N N N N N 120.634 176.707 140.692 -4.727 2.503  -0.949 C20 F9M 4  
F9M C21 C4  C 0 1 N N N N N N 117.992 175.163 142.365 -1.467 2.284  0.191  C21 F9M 5  
F9M C22 C5  C 0 1 Y N N N N N 122.413 175.316 139.548 -5.824 0.425  -1.057 C22 F9M 6  
F9M C24 C6  C 0 1 Y N N N N N 116.308 173.246 142.966 -0.201 0.637  -1.199 C24 F9M 7  
F9M C26 C7  C 0 1 Y N N N N N 124.530 174.195 138.781 -7.675 0.218  0.294  C26 F9M 8  
F9M C28 C8  C 0 1 Y N N N N N 124.674 175.286 137.787 -7.605 -1.160 0.161  C28 F9M 9  
F9M C16 C9  C 0 1 N N R N N N 119.133 176.651 140.649 -4.010 2.206  0.379  C16 F9M 10 
F9M C18 C10 C 0 1 N N N N N N 118.767 176.558 139.191 -4.724 1.003  1.039  C18 F9M 11 
F9M C19 C11 C 0 1 N N N N N N 120.456 174.070 140.537 -3.625 0.547  -1.883 C19 F9M 12 
F9M C23 C12 C 0 1 Y N N N N N 117.675 173.704 142.607 -0.228 1.554  -0.137 C23 F9M 13 
F9M C25 C13 C 0 1 Y N N N N N 118.822 172.724 142.448 0.936  1.767  0.604  C25 F9M 14 
F9M C27 C14 C 0 1 Y N N N N N 123.695 176.390 137.684 -6.595 -1.699 -0.621 C27 F9M 15 
F9M C29 C15 C 0 1 Y N N N N N 116.077 171.797 143.179 0.971  -0.017 -1.467 C29 F9M 16 
F9M C30 C16 C 0 1 Y N N N N N 117.237 170.832 143.012 2.095  0.244  -0.686 C30 F9M 17 
F9M C31 C17 C 0 1 N N N N N N 125.862 175.297 136.868 -8.607 -2.053 0.846  C31 F9M 18 
F9M C32 C18 C 0 1 Y N N N N N 115.821 168.810 142.807 4.434  -0.088 -0.254 C32 F9M 19 
F9M C33 C19 C 0 1 Y N N N N N 114.141 167.174 142.389 6.606  -0.137 0.294  C33 F9M 20 
F9M C34 C20 C 0 1 Y N N N N N 113.578 168.401 141.924 6.248  0.761  1.231  C34 F9M 21 
F9M C35 C21 C 0 1 Y N N N N N 113.558 165.792 142.364 7.999  -0.610 0.140  C35 F9M 22 
F9M C36 C22 C 0 1 Y N N N N N 112.194 165.392 142.259 8.439  -1.505 -0.770 C36 F9M 23 
F9M C37 C23 C 0 1 Y N N N N N 113.505 163.362 142.363 10.403 -1.136 0.210  C37 F9M 24 
F9M C38 C24 C 0 1 N N N N N N 110.990 166.317 142.161 7.533  -2.158 -1.781 C38 F9M 25 
F9M C39 C25 C 0 1 N N N N N N 113.985 161.917 142.401 11.883 -1.296 0.442  C39 F9M 26 
F9M F03 F1  F 0 1 N N N N N N 126.059 174.061 136.349 -9.699 -2.266 -0.002 F03 F9M 27 
F9M F04 F2  F 0 1 N N N N N N 125.628 176.210 135.895 -8.007 -3.279 1.152  F04 F9M 28 
F9M F05 F3  F 0 1 N N N N N N 126.944 175.675 137.593 -9.045 -1.441 2.026  F05 F9M 29 
F9M N07 N2  N 0 1 N N N N N N 118.684 175.439 141.144 -2.664 1.683  0.037  N07 F9M 30 
F9M N08 N3  N 0 1 N N N N N N 121.298 175.342 140.430 -4.904 1.245  -1.687 N08 F9M 31 
F9M N09 N4  N 0 1 Y N N N N N 123.390 174.214 139.664 -6.780 0.972  -0.321 N09 F9M 32 
F9M N10 N5  N 0 1 Y N N N N N 122.560 176.402 138.567 -5.731 -0.888 -1.209 N10 F9M 33 
F9M N11 N6  N 0 1 Y N N N N N 118.592 171.288 142.652 2.043  1.117  0.312  N11 F9M 34 
F9M N13 N7  N 0 1 Y N N N N N 115.566 167.439 142.933 5.615  -0.571 -0.484 N13 F9M 35 
F9M N14 N8  N 0 1 Y N N N N N 112.170 163.829 142.264 9.729  -1.757 -0.698 N14 F9M 36 
F9M O06 O1  O 0 1 N N N N N N 117.692 176.020 143.121 -1.409 3.428  0.599  O06 F9M 37 
F9M S01 S1  S 0 1 Y N N N N N 114.608 169.469 142.166 4.518  1.056  1.083  S01 F9M 38 
F9M S02 S2  S 0 1 Y N N N N N 114.415 164.575 142.439 9.380  -0.101 1.108  S02 F9M 39 
F9M H1  H1  H 0 1 N N N N N N 118.383 173.624 140.159 -2.072 -0.298 -0.580 H1  F9M 40 
F9M H2  H2  H 0 1 N N N N N N 120.189 175.185 138.503 -4.739 -0.851 -0.104 H2  F9M 41 
F9M H3  H3  H 0 1 N N N N N N 118.479 174.764 138.152 -3.551 -0.822 1.236  H3  F9M 42 
F9M H4  H4  H 0 1 N N N N N N 120.980 177.417 139.926 -5.701 2.947  -0.746 H4  F9M 43 
F9M H5  H5  H 0 1 N N N N N N 120.943 177.061 141.687 -4.126 3.193  -1.541 H5  F9M 44 
F9M H6  H6  H 0 1 N N N N N N 115.499 173.954 143.070 -1.087 0.448  -1.787 H6  F9M 45 
F9M H7  H7  H 0 1 N N N N N N 125.263 173.404 138.842 -8.450 0.669  0.896  H7  F9M 46 
F9M H8  H8  H 0 1 N N N N N N 118.675 177.527 141.132 -3.974 3.077  1.033  H8  F9M 47 
F9M H9  H9  H 0 1 N N N N N N 119.328 177.286 138.587 -5.783 1.001  0.781  H9  F9M 48 
F9M H10 H10 H 0 1 N N N N N N 117.688 176.707 139.036 -4.595 1.031  2.121  H10 F9M 49 
F9M H11 H11 H 0 1 N N N N N N 120.509 173.659 141.556 -2.974 1.149  -2.518 H11 F9M 50 
F9M H12 H12 H 0 1 N N N N N N 120.807 173.315 139.818 -3.804 -0.419 -2.354 H12 F9M 51 
F9M H13 H13 H 0 1 N N N N N N 119.806 173.082 142.185 0.929  2.471  1.423  H13 F9M 52 
F9M H14 H14 H 0 1 N N N N N N 123.831 177.176 136.956 -6.512 -2.769 -0.746 H14 F9M 53 
F9M H15 H15 H 0 1 N N N N N N 115.097 171.433 143.449 1.024  -0.730 -2.277 H15 F9M 54 
F9M H16 H16 H 0 1 N N N N N N 112.601 168.536 141.484 6.909  1.221  1.951  H16 F9M 55 
F9M H20 H20 H 0 1 N N N N N N 110.071 165.717 142.092 7.501  -1.552 -2.686 H20 F9M 56 
F9M H21 H21 H 0 1 N N N N N N 110.945 166.956 143.056 7.913  -3.151 -2.022 H21 F9M 57 
F9M H22 H22 H 0 1 N N N N N N 111.084 166.948 141.265 6.528  -2.245 -1.366 H22 F9M 58 
F9M H23 H23 H 0 1 N N N N N N 113.120 161.241 142.339 12.427 -0.570 -0.163 H23 F9M 59 
F9M H24 H24 H 0 1 N N N N N N 114.657 161.732 141.550 12.106 -1.129 1.496  H24 F9M 60 
F9M H25 H25 H 0 1 N N N N N N 114.525 161.735 143.342 12.189 -2.304 0.161  H25 F9M 61 
F9M H30 H30 H 0 1 N N N N N N 117.768 168.883 143.639 3.309  -1.111 -1.632 H30 F9M 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F9M N12 C30 SING N N 1  
F9M N12 C32 SING N N 2  
F9M C15 C17 SING N N 3  
F9M C15 C19 SING N N 4  
F9M C15 N07 SING N N 5  
F9M C17 C18 SING N N 6  
F9M C20 C16 SING N N 7  
F9M C20 N08 SING N N 8  
F9M C21 C23 SING N N 9  
F9M C21 N07 SING N N 10 
F9M C21 O06 DOUB N N 11 
F9M C22 N08 SING N N 12 
F9M C22 N09 DOUB Y N 13 
F9M C22 N10 SING Y N 14 
F9M C24 C23 DOUB Y N 15 
F9M C24 C29 SING Y N 16 
F9M C26 C28 DOUB Y N 17 
F9M C26 N09 SING Y N 18 
F9M C28 C27 SING Y N 19 
F9M C28 C31 SING N N 20 
F9M C16 C18 SING N N 21 
F9M C16 N07 SING N N 22 
F9M C19 N08 SING N N 23 
F9M C23 C25 SING Y N 24 
F9M C25 N11 DOUB Y N 25 
F9M C27 N10 DOUB Y N 26 
F9M C29 C30 DOUB Y N 27 
F9M C30 N11 SING Y N 28 
F9M C31 F03 SING N N 29 
F9M C31 F04 SING N N 30 
F9M C31 F05 SING N N 31 
F9M C32 N13 DOUB Y N 32 
F9M C32 S01 SING Y N 33 
F9M C33 C34 DOUB Y N 34 
F9M C33 C35 SING N N 35 
F9M C33 N13 SING Y N 36 
F9M C34 S01 SING Y N 37 
F9M C35 C36 DOUB Y N 38 
F9M C35 S02 SING Y N 39 
F9M C36 C38 SING N N 40 
F9M C36 N14 SING Y N 41 
F9M C37 C39 SING N N 42 
F9M C37 N14 DOUB Y N 43 
F9M C37 S02 SING Y N 44 
F9M C15 H1  SING N N 45 
F9M C17 H2  SING N N 46 
F9M C17 H3  SING N N 47 
F9M C20 H4  SING N N 48 
F9M C20 H5  SING N N 49 
F9M C24 H6  SING N N 50 
F9M C26 H7  SING N N 51 
F9M C16 H8  SING N N 52 
F9M C18 H9  SING N N 53 
F9M C18 H10 SING N N 54 
F9M C19 H11 SING N N 55 
F9M C19 H12 SING N N 56 
F9M C25 H13 SING N N 57 
F9M C27 H14 SING N N 58 
F9M C29 H15 SING N N 59 
F9M C34 H16 SING N N 60 
F9M C38 H20 SING N N 61 
F9M C38 H21 SING N N 62 
F9M C38 H22 SING N N 63 
F9M C39 H23 SING N N 64 
F9M C39 H24 SING N N 65 
F9M C39 H25 SING N N 66 
F9M N12 H30 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F9M InChI            InChI                1.06  "InChI=1S/C25H23F3N8OS2/c1-13-21(39-14(2)32-13)19-12-38-24(33-19)34-20-6-3-15(7-29-20)22(37)36-17-4-5-18(36)11-35(10-17)23-30-8-16(9-31-23)25(26,27)28/h3,6-9,12,17-18H,4-5,10-11H2,1-2H3,(H,29,33,34)/t17-,18+" 
F9M InChIKey         InChI                1.06  JARXMNZSCUFQHX-HDICACEKSA-N                                                                                                                                                                                      
F9M SMILES_CANONICAL CACTVS               3.385 "Cc1sc(c(C)n1)c2csc(Nc3ccc(cn3)C(=O)N4[C@H]5CC[C@@H]4CN(C5)c6ncc(cn6)C(F)(F)F)n2"                                                                                                                                
F9M SMILES           CACTVS               3.385 "Cc1sc(c(C)n1)c2csc(Nc3ccc(cn3)C(=O)N4[CH]5CC[CH]4CN(C5)c6ncc(cn6)C(F)(F)F)n2"                                                                                                                                   
F9M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(sc(n1)C)c2csc(n2)Nc3ccc(cn3)C(=O)N4[C@@H]5CC[C@H]4CN(C5)c6ncc(cn6)C(F)(F)F"                                                                                                                                
F9M SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(sc(n1)C)c2csc(n2)Nc3ccc(cn3)C(=O)N4C5CCC4CN(C5)c6ncc(cn6)C(F)(F)F"                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           F9M 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F9M "Create component" 2023-07-04 PDBC 
F9M "Initial release"  2024-05-08 RCSB 
# 
