data_F6M
# 
_chem_comp.id                                    F6M 
_chem_comp.name                                  "N-[(2S)-1-[5-[2-[(4-cyanophenyl)amino]-4-(propylamino)pyrimidin-5-yl]pent-4-ynylamino]-1-oxidanylidene-propan-2-yl]-4-(dimethylamino)-N-methyl-but-2-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H38 N8 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-01-24 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        530.664 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F6M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5X02 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F6M N3  N1  N 0 1 N N N N N N -28.853 -1.358 -9.736  -9.361  -6.537 0.163  N3  F6M 1  
F6M C11 C1  C 0 1 N N N N N N -28.755 -0.470 -8.984  -9.095  -5.436 0.079  C11 F6M 2  
F6M C8  C2  C 0 1 Y N N N N N -28.607 0.531  -8.174  -8.760  -4.048 -0.027 C8  F6M 3  
F6M C9  C3  C 0 1 Y N N N N N -28.831 1.822  -8.627  -9.499  -3.211 -0.868 C9  F6M 4  
F6M C10 C4  C 0 1 Y N N N N N -28.699 2.912  -7.786  -9.174  -1.877 -0.968 C10 F6M 5  
F6M C7  C5  C 0 1 Y N N N N N -28.249 0.351  -6.858  -7.696  -3.526 0.715  C7  F6M 6  
F6M C6  C6  C 0 1 Y N N N N N -28.107 1.443  -6.008  -7.376  -2.191 0.610  C6  F6M 7  
F6M C5  C7  C 0 1 Y N N N N N -28.332 2.739  -6.452  -8.111  -1.362 -0.232 C5  F6M 8  
F6M N2  N2  N 0 1 N N N N N N -28.192 3.748  -5.558  -7.784  -0.011 -0.336 N2  F6M 9  
F6M C4  C8  C 0 1 Y N N N N N -28.361 5.061  -5.801  -6.462  0.391  -0.241 C4  F6M 10 
F6M N1  N3  N 0 1 Y N N N N N -28.713 5.507  -7.010  -6.184  1.686  -0.226 N1  F6M 11 
F6M C3  C9  C 0 1 Y N N N N N -28.883 6.817  -7.259  -4.930  2.111  -0.137 C3  F6M 12 
F6M N8  N4  N 0 1 N N N N N N -29.256 7.253  -8.494  -4.644  3.464  -0.120 N8  F6M 13 
F6M C2  C10 C 0 1 N N N N N N -29.484 6.355  -9.610  -5.731  4.443  -0.202 C2  F6M 14 
F6M C1  C11 C 0 1 N N N N N N -28.632 6.772  -10.786 -5.147  5.857  -0.164 C1  F6M 15 
F6M C31 C12 C 0 1 N N N N N N -27.234 7.123  -10.322 -6.282  6.879  -0.249 C31 F6M 16 
F6M N4  N5  N 0 1 Y N N N N N -28.160 5.921  -4.776  -5.514  -0.532 -0.164 N4  F6M 17 
F6M C12 C13 C 0 1 Y N N N N N -28.300 7.244  -4.904  -4.238  -0.194 -0.073 C12 F6M 18 
F6M C13 C14 C 0 1 Y N N N N N -28.650 7.769  -6.133  -3.893  1.158  -0.058 C13 F6M 19 
F6M C14 C15 C 0 1 N N N N N N -28.843 9.025  -6.386  -2.524  1.567  0.039  C14 F6M 20 
F6M C15 C16 C 0 1 N N N N N N -29.036 10.176 -6.550  -1.402  1.902  0.119  C15 F6M 21 
F6M C16 C17 C 0 1 N N N N N N -29.172 11.630 -6.795  0.005   2.322  0.219  C16 F6M 22 
F6M C17 C18 C 0 1 N N N N N N -29.540 12.375 -5.521  0.903   1.085  0.289  C17 F6M 23 
F6M C18 C19 C 0 1 N N N N N N -28.253 12.996 -5.028  2.365   1.522  0.393  C18 F6M 24 
F6M N5  N6  N 0 1 N N N N N N -28.259 13.654 -3.730  3.225   0.338  0.459  N5  F6M 25 
F6M C19 C20 C 0 1 N N N N N N -29.272 14.333 -3.161  4.562   0.480  0.555  C19 F6M 26 
F6M O1  O1  O 0 1 N N N N N N -30.378 14.496 -3.664  5.053   1.588  0.587  O1  F6M 27 
F6M C20 C21 C 0 1 N N S N N N -29.012 14.960 -1.817  5.446   -0.738 0.623  C20 F6M 28 
F6M C28 C22 C 0 1 N N N N N N -29.475 16.410 -1.965  5.074   -1.571 1.852  C28 F6M 29 
F6M N6  N7  N 0 1 N N N N N N -27.613 14.947 -1.330  6.847   -0.320 0.723  N6  F6M 30 
F6M C27 C23 C 0 1 N N N N N N -26.656 15.792 -2.036  7.287   0.501  1.854  C27 F6M 31 
F6M C21 C24 C 0 1 N N N N N N -27.316 14.173 -0.258  7.730   -0.691 -0.225 C21 F6M 32 
F6M O2  O2  O 0 1 N N N N N N -28.218 13.707 0.405   7.364   -1.372 -1.164 O2  F6M 33 
F6M C22 C25 C 0 1 N N N N N N -25.872 13.834 0.153   9.136   -0.271 -0.125 C22 F6M 34 
F6M C23 C26 C 0 1 N N N N N N -25.730 12.795 1.322   10.008  -0.637 -1.061 C23 F6M 35 
F6M C24 C27 C 0 1 N N N N N N -24.698 13.242 2.382   11.448  -0.206 -0.958 C24 F6M 36 
F6M N7  N8  N 0 1 N N N N N N -25.398 13.481 3.650   12.318  -1.389 -1.012 N7  F6M 37 
F6M C25 C28 C 0 1 N N N N N N -26.088 12.405 4.378   13.727  -1.001 -1.153 C25 F6M 38 
F6M C26 C29 C 0 1 N N N N N N -25.393 14.829 4.202   12.122  -2.241 0.169  C26 F6M 39 
F6M H1  H1  H 0 1 N N N N N N -29.114 1.980  -9.657  -10.323 -3.611 -1.440 H1  F6M 40 
F6M H2  H2  H 0 1 N N N N N N -28.882 3.906  -8.166  -9.744  -1.230 -1.617 H2  F6M 41 
F6M H3  H3  H 0 1 N N N N N N -28.077 -0.647 -6.482  -7.126  -4.169 1.369  H3  F6M 42 
F6M H4  H4  H 0 1 N N N N N N -27.816 1.279  -4.981  -6.555  -1.787 1.183  H4  F6M 43 
F6M H5  H5  H 0 1 N N N N N N -27.938 3.492  -4.625  -8.483  0.648  -0.473 H5  F6M 44 
F6M H6  H6  H 0 1 N N N N N N -28.541 7.886  -8.791  -3.724  3.764  -0.055 H6  F6M 45 
F6M H7  H7  H 0 1 N N N N N N -30.545 6.392  -9.897  -6.279  4.300  -1.133 H7  F6M 46 
F6M H8  H8  H 0 1 N N N N N N -29.220 5.329  -9.313  -6.407  4.306  0.642  H8  F6M 47 
F6M H9  H9  H 0 1 N N N N N N -29.085 7.650  -11.270 -4.599  5.999  0.767  H9  F6M 48 
F6M H10 H10 H 0 1 N N N N N N -28.578 5.943  -11.507 -4.471  5.993  -1.008 H10 F6M 49 
F6M H11 H11 H 0 1 N N N N N N -26.625 7.424  -11.187 -5.866  7.886  -0.222 H11 F6M 50 
F6M H12 H12 H 0 1 N N N N N N -27.284 7.953  -9.602  -6.830  6.737  -1.181 H12 F6M 51 
F6M H13 H13 H 0 1 N N N N N N -26.777 6.246  -9.840  -6.958  6.742  0.595  H13 F6M 52 
F6M H14 H14 H 0 1 N N N N N N -28.141 7.895  -4.057  -3.474  -0.955 -0.011 H14 F6M 53 
F6M H15 H15 H 0 1 N N N N N N -28.216 12.020 -7.174  0.270   2.915  -0.656 H15 F6M 54 
F6M H16 H16 H 0 1 N N N N N N -29.959 11.794 -7.546  0.142   2.921  1.119  H16 F6M 55 
F6M H17 H17 H 0 1 N N N N N N -30.286 13.155 -5.734  0.638   0.492  1.164  H17 F6M 56 
F6M H18 H18 H 0 1 N N N N N N -29.942 11.678 -4.771  0.766   0.486  -0.612 H18 F6M 57 
F6M H19 H19 H 0 1 N N N N N N -27.500 12.195 -4.984  2.631   2.115  -0.482 H19 F6M 58 
F6M H20 H20 H 0 1 N N N N N N -27.947 13.746 -5.772  2.503   2.121  1.293  H20 F6M 59 
F6M H21 H21 H 0 1 N N N N N N -27.413 13.595 -3.200  2.832   -0.549 0.434  H21 F6M 60 
F6M H22 H22 H 0 1 N N N N N N -29.653 14.468 -1.071  5.310   -1.338 -0.277 H22 F6M 61 
F6M H23 H23 H 0 1 N N N N N N -29.318 16.944 -1.016  5.714   -2.452 1.901  H23 F6M 62 
F6M H24 H24 H 0 1 N N N N N N -28.896 16.900 -2.762  5.211   -0.972 2.752  H24 F6M 63 
F6M H25 H25 H 0 1 N N N N N N -30.544 16.429 -2.223  4.032   -1.882 1.778  H25 F6M 64 
F6M H26 H26 H 0 1 N N N N N N -25.663 15.687 -1.574  7.613   -0.147 2.668  H26 F6M 65 
F6M H27 H27 H 0 1 N N N N N N -26.604 15.484 -3.091  8.117   1.135  1.541  H27 F6M 66 
F6M H28 H28 H 0 1 N N N N N N -26.979 16.842 -1.976  6.461   1.124  2.194  H28 F6M 67 
F6M H29 H29 H 0 1 N N N N N N -25.015 14.280 -0.330  9.461   0.334  0.709  H29 F6M 68 
F6M H31 H31 H 0 1 N N N N N N -26.290 11.873 1.379   9.683   -1.242 -1.894 H31 F6M 69 
F6M H33 H33 H 0 1 N N N N N N -23.943 12.454 2.519   11.689  0.459  -1.787 H33 F6M 70 
F6M H34 H34 H 0 1 N N N N N N -24.205 14.168 2.051   11.605  0.317  -0.015 H34 F6M 71 
F6M H36 H36 H 0 1 N N N N N N -26.539 12.812 5.295   14.023  -0.389 -0.301 H36 F6M 72 
F6M H37 H37 H 0 1 N N N N N N -26.876 11.978 3.741   14.349  -1.895 -1.191 H37 F6M 73 
F6M H38 H38 H 0 1 N N N N N N -25.365 11.619 4.643   13.856  -0.430 -2.073 H38 F6M 74 
F6M H39 H39 H 0 1 N N N N N N -25.956 14.841 5.147   11.084  -2.571 0.211  H39 F6M 75 
F6M H40 H40 H 0 1 N N N N N N -24.356 15.145 4.389   12.778  -3.109 0.104  H40 F6M 76 
F6M H41 H41 H 0 1 N N N N N N -25.863 15.520 3.487   12.359  -1.673 1.069  H41 F6M 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F6M C1  C31 SING N N 1  
F6M C1  C2  SING N N 2  
F6M N3  C11 TRIP N N 3  
F6M C2  N8  SING N N 4  
F6M C11 C8  SING N N 5  
F6M C9  C8  DOUB Y N 6  
F6M C9  C10 SING Y N 7  
F6M N8  C3  SING N N 8  
F6M C8  C7  SING Y N 9  
F6M C10 C5  DOUB Y N 10 
F6M C3  N1  DOUB Y N 11 
F6M C3  C13 SING Y N 12 
F6M N1  C4  SING Y N 13 
F6M C7  C6  DOUB Y N 14 
F6M C16 C15 SING N N 15 
F6M C16 C17 SING N N 16 
F6M C15 C14 TRIP N N 17 
F6M C5  C6  SING Y N 18 
F6M C5  N2  SING N N 19 
F6M C14 C13 SING N N 20 
F6M C13 C12 DOUB Y N 21 
F6M C4  N2  SING N N 22 
F6M C4  N4  DOUB Y N 23 
F6M C17 C18 SING N N 24 
F6M C18 N5  SING N N 25 
F6M C12 N4  SING Y N 26 
F6M N5  C19 SING N N 27 
F6M O1  C19 DOUB N N 28 
F6M C19 C20 SING N N 29 
F6M C27 N6  SING N N 30 
F6M C28 C20 SING N N 31 
F6M C20 N6  SING N N 32 
F6M N6  C21 SING N N 33 
F6M C21 C22 SING N N 34 
F6M C21 O2  DOUB N N 35 
F6M C22 C23 DOUB N E 36 
F6M C23 C24 SING N N 37 
F6M C24 N7  SING N N 38 
F6M N7  C26 SING N N 39 
F6M N7  C25 SING N N 40 
F6M C9  H1  SING N N 41 
F6M C10 H2  SING N N 42 
F6M C7  H3  SING N N 43 
F6M C6  H4  SING N N 44 
F6M N2  H5  SING N N 45 
F6M N8  H6  SING N N 46 
F6M C2  H7  SING N N 47 
F6M C2  H8  SING N N 48 
F6M C1  H9  SING N N 49 
F6M C1  H10 SING N N 50 
F6M C31 H11 SING N N 51 
F6M C31 H12 SING N N 52 
F6M C31 H13 SING N N 53 
F6M C12 H14 SING N N 54 
F6M C16 H15 SING N N 55 
F6M C16 H16 SING N N 56 
F6M C17 H17 SING N N 57 
F6M C17 H18 SING N N 58 
F6M C18 H19 SING N N 59 
F6M C18 H20 SING N N 60 
F6M N5  H21 SING N N 61 
F6M C20 H22 SING N N 62 
F6M C28 H23 SING N N 63 
F6M C28 H24 SING N N 64 
F6M C28 H25 SING N N 65 
F6M C27 H26 SING N N 66 
F6M C27 H27 SING N N 67 
F6M C27 H28 SING N N 68 
F6M C22 H29 SING N N 69 
F6M C23 H31 SING N N 70 
F6M C24 H33 SING N N 71 
F6M C24 H34 SING N N 72 
F6M C25 H36 SING N N 73 
F6M C25 H37 SING N N 74 
F6M C25 H38 SING N N 75 
F6M C26 H39 SING N N 76 
F6M C26 H40 SING N N 77 
F6M C26 H41 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F6M InChI            InChI                1.03  "InChI=1S/C29H38N8O2/c1-6-17-31-27-24(21-33-29(35-27)34-25-15-13-23(20-30)14-16-25)11-8-7-9-18-32-28(39)22(2)37(5)26(38)12-10-19-36(3)4/h10,12-16,21-22H,6-7,9,17-19H2,1-5H3,(H,32,39)(H2,31,33,34,35)/b12-10+/t22-/m0/s1" 
F6M InChIKey         InChI                1.03  HJFSVYUFOXAVAA-YUAYGMJFSA-N                                                                                                                                                                                                
F6M SMILES_CANONICAL CACTVS               3.385 "CCCNc1nc(Nc2ccc(cc2)C#N)ncc1C#CCCCNC(=O)[C@H](C)N(C)C(=O)\C=C\CN(C)C"                                                                                                                                                     
F6M SMILES           CACTVS               3.385 "CCCNc1nc(Nc2ccc(cc2)C#N)ncc1C#CCCCNC(=O)[CH](C)N(C)C(=O)C=CCN(C)C"                                                                                                                                                        
F6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCNc1c(cnc(n1)Nc2ccc(cc2)C#N)C#CCCCNC(=O)[C@H](C)N(C)C(=O)C=CCN(C)C"                                                                                                                                                     
F6M SMILES           "OpenEye OEToolkits" 2.0.6 "CCCNc1c(cnc(n1)Nc2ccc(cc2)C#N)C#CCCCNC(=O)C(C)N(C)C(=O)C=CCN(C)C"                                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           F6M 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-1-[5-[2-[(4-cyanophenyl)amino]-4-(propylamino)pyrimidin-5-yl]pent-4-ynylamino]-1-oxidanylidene-propan-2-yl]-4-(dimethylamino)-~{N}-methyl-but-2-enamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F6M "Create component" 2017-01-24 RCSB 
F6M "Initial release"  2018-01-24 RCSB 
F6M "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            F6M 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
