data_F3M
# 
_chem_comp.id                                    F3M 
_chem_comp.name                                  "methyl 4-amino-2,4,5-trideoxy-5,5,5-trifluoro-L-threo-pentonate" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H10 F3 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-07-09 
_chem_comp.pdbx_modified_date                    2012-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        201.144 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F3M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1XE5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F3M N   N   N 0 1 N N N 55.905 14.481 9.812  -1.303 1.864  -0.458 N   F3M 1  
F3M C1  C1  C 0 1 N N N 52.772 11.876 9.331  2.545  0.023  0.153  C1  F3M 2  
F3M F1  F1  F 0 1 N N N 54.693 16.614 11.081 -2.451 -0.634 -1.130 F1  F3M 3  
F3M O1  O1  O 0 1 N N N 51.674 12.517 9.354  3.741  0.614  0.301  O1  F3M 4  
F3M C2  C2  C 0 1 N N N 53.910 12.263 10.276 1.281  0.822  0.340  C2  F3M 5  
F3M F2  F2  F 0 1 N N N 54.610 15.552 12.956 -3.597 0.502  0.488  F2  F3M 6  
F3M O2  O2  O 0 1 N N N 52.997 10.912 8.545  2.481  -1.150 -0.131 O2  F3M 7  
F3M C3  C3  C 0 1 N N S 53.836 13.697 10.842 0.068  -0.083 0.116  C3  F3M 8  
F3M F3  F3  F 0 1 N N N 56.503 16.013 12.035 -2.340 -1.323 1.046  F3  F3M 9  
F3M O3  O3  O 0 1 N N N 53.076 14.549 9.990  0.042  -0.516 -1.245 O3  F3M 10 
F3M C4  C4  C 0 1 N N R 55.238 14.294 11.082 -1.213 0.695  0.427  C4  F3M 11 
F3M C5  C5  C 0 1 N N N 55.252 15.652 11.807 -2.426 -0.209 0.203  C5  F3M 12 
F3M CA  CA  C 0 1 N N N 50.662 11.775 9.261  4.915  -0.217 0.106  CA  F3M 13 
F3M HN  HN  H 0 1 N N N 56.814 14.868 9.966  -0.547 2.509  -0.283 HN  F3M 14 
F3M HNA HNA H 0 1 N N N 55.993 13.599 9.349  -1.323 1.584  -1.427 HNA F3M 15 
F3M H2  H2  H 0 1 N N N 53.886 11.568 11.128 1.252  1.224  1.353  H2  F3M 16 
F3M H2A H2A H 0 1 N N N 54.852 12.175 9.715  1.260  1.642  -0.377 H2A F3M 17 
F3M H3  H3  H 0 1 N N N 53.327 13.630 11.815 0.135  -0.950 0.772  H3  F3M 18 
F3M HO3 HO3 H 0 1 N N N 53.046 15.423 10.361 -0.017 0.205  -1.887 HO3 F3M 19 
F3M H4  H4  H 0 1 N N N 55.747 13.570 11.735 -1.193 1.026  1.466  H4  F3M 20 
F3M HA  HA  H 0 1 N N N 49.751 12.391 9.287  4.903  -1.038 0.823  HA  F3M 21 
F3M HAA HAA H 0 1 N N N 50.701 11.219 8.313  4.911  -0.620 -0.907 HAA F3M 22 
F3M HAB HAB H 0 1 N N N 50.649 11.066 10.102 5.813  0.382  0.255  HAB F3M 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F3M N  C4  SING N N 1  
F3M C1 O1  SING N N 2  
F3M C1 C2  SING N N 3  
F3M C1 O2  DOUB N N 4  
F3M F1 C5  SING N N 5  
F3M O1 CA  SING N N 6  
F3M C2 C3  SING N N 7  
F3M F2 C5  SING N N 8  
F3M C3 O3  SING N N 9  
F3M C3 C4  SING N N 10 
F3M F3 C5  SING N N 11 
F3M C4 C5  SING N N 12 
F3M N  HN  SING N N 13 
F3M N  HNA SING N N 14 
F3M C2 H2  SING N N 15 
F3M C2 H2A SING N N 16 
F3M C3 H3  SING N N 17 
F3M O3 HO3 SING N N 18 
F3M C4 H4  SING N N 19 
F3M CA HA  SING N N 20 
F3M CA HAA SING N N 21 
F3M CA HAB SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F3M SMILES           ACDLabs              11.02 "O=C(OC)CC(O)C(N)C(F)(F)F"                                                            
F3M SMILES_CANONICAL CACTVS               3.352 "COC(=O)C[C@H](O)[C@@H](N)C(F)(F)F"                                                   
F3M SMILES           CACTVS               3.352 "COC(=O)C[CH](O)[CH](N)C(F)(F)F"                                                      
F3M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "COC(=O)C[C@@H]([C@H](C(F)(F)F)N)O"                                                   
F3M SMILES           "OpenEye OEToolkits" 1.7.0 "COC(=O)CC(C(C(F)(F)F)N)O"                                                            
F3M InChI            InChI                1.03  "InChI=1S/C6H10F3NO3/c1-13-4(12)2-3(11)5(10)6(7,8)9/h3,5,11H,2,10H2,1H3/t3-,5+/m0/s1" 
F3M InChIKey         InChI                1.03  ZVARBPCHAKEWAX-WVZVXSGGSA-N                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F3M "SYSTEMATIC NAME" ACDLabs              11.02 "methyl 4-amino-2,4,5-trideoxy-5,5,5-trifluoro-L-threo-pentonate" 
F3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "methyl (3S,4R)-4-azanyl-5,5,5-trifluoro-3-hydroxy-pentanoate"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F3M "Create component"  2009-07-09 PDBJ 
F3M "Modify descriptor" 2011-06-04 RCSB 
# 
