data_EEM
#

_chem_comp.id                                   EEM
_chem_comp.name                                 "[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N6 O5 Se"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Se-ADENOSYLSELENOMETHIONINE
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2008-09-03
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       446.340
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EEM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3E5F
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EEM  C2      C2      C   0  1  Y  N  N  15.894   -7.528  -22.257   6.619  -0.225   1.323  C2      EEM   1  
EEM  N3      N3      N   0  1  Y  N  N  14.910   -8.366  -21.981   5.394   0.196   1.089  N3      EEM   2  
EEM  C4      C4      C   0  1  Y  N  N  14.208   -8.943  -22.968   4.584  -0.488   0.289  C4      EEM   3  
EEM  "C1'"   "C1'"   C   0  1  N  N  R  12.510  -10.391  -21.817   2.387   0.768   0.204  "C1'"   EEM   4  
EEM  "C2'"   "C2'"   C   0  1  N  N  R  13.498  -10.983  -20.811   2.566   1.949  -0.775  "C2'"   EEM   5  
EEM  "C3'"   "C3'"   C   0  1  N  N  S  12.648  -10.910  -19.545   1.135   2.498  -0.966  "C3'"   EEM   6  
EEM  "C4'"   "C4'"   C   0  1  N  N  S  12.080   -9.500  -19.711   0.260   1.584  -0.079  "C4'"   EEM   7  
EEM  "C5'"   "C5'"   C   0  1  N  N  N  13.216   -8.517  -19.425  -1.087   1.319  -0.754  "C5'"   EEM   8  
EEM  O       O       O   0  1  N  N  N  16.917   -7.026  -16.200  -8.072  -1.236   0.629  O       EEM   9  
EEM  C       C       C   0  1  N  N  N  16.214   -6.086  -16.631  -7.152  -1.728   0.020  C       EEM  10  
EEM  OXT     OXT     O   0  1  N  N  N  15.317   -5.490  -15.995  -7.009  -3.062  -0.017  OXT     EEM  11  
EEM  CA      CA      C   0  1  N  N  S  16.468   -5.633  -18.072  -6.165  -0.845  -0.698  CA      EEM  12  
EEM  N       N       N   0  1  N  N  N  17.791   -6.095  -18.517  -6.765   0.478  -0.923  N       EEM  13  
EEM  CB      CB      C   0  1  N  N  N  15.401   -6.238  -18.986  -4.902  -0.694   0.152  CB      EEM  14  
EEM  CG      CG      C   0  1  N  N  N  13.998   -5.728  -18.647  -3.852   0.099  -0.630  CG      EEM  15  
EEM  SE      SE      SE  1  0  N  N  S  12.697   -6.734  -19.513  -2.234   0.291   0.459  SE      EEM  16  
EEM  CE      CE      C   0  1  N  N  N  11.349   -6.676  -18.254  -2.793   1.686   1.717  CE      EEM  17  
EEM  "O4'"   "O4'"   O   0  1  N  N  N  11.740   -9.406  -21.105   1.013   0.357   0.040  "O4'"   EEM  18  
EEM  "O3'"   "O3'"   O   0  1  N  N  N  11.588  -11.865  -19.614   1.055   3.855  -0.522  "O3'"   EEM  19  
EEM  "O2'"   "O2'"   O   0  1  N  N  N  13.724  -12.356  -21.135   3.414   2.948  -0.204  "O2'"   EEM  20  
EEM  N9      N9      N   0  1  Y  N  N  13.195   -9.803  -22.992   3.293  -0.329  -0.148  N9      EEM  21  
EEM  C8      C8      C   0  1  Y  N  N  12.887  -10.036  -24.268   3.008  -1.377  -0.972  C8      EEM  22  
EEM  N7      N7      N   0  1  Y  N  N  13.692   -9.335  -25.063   4.041  -2.163  -1.064  N7      EEM  23  
EEM  C5      C5      C   0  1  Y  N  N  14.522   -8.647  -24.287   5.051  -1.671  -0.308  C5      EEM  24  
EEM  N1      N1      N   0  1  Y  N  N  16.222   -7.224  -23.501   7.105  -1.328   0.782  N1      EEM  25  
EEM  C6      C6      C   0  1  Y  N  N  15.561   -7.758  -24.536   6.367  -2.079  -0.029  C6      EEM  26  
EEM  N6      N6      N   0  1  N  N  N  15.866   -7.420  -25.785   6.882  -3.236  -0.587  N6      EEM  27  
EEM  H2      H2      H   0  1  N  N  N  16.445   -7.079  -21.444   7.253   0.354   1.978  H2      EEM  28  
EEM  "H1'"   "H1'"   H   0  1  N  N  N  11.860  -11.179  -22.225   2.566   1.094   1.229  "H1'"   EEM  29  
EEM  "H2'"   "H2'"   H   0  1  N  N  N  14.479  -10.489  -20.759   2.971   1.600  -1.724  "H2'"   EEM  30  
EEM  "H3'"   "H3'"   H   0  1  N  N  N  13.180  -11.107  -18.603   0.832   2.421  -2.010  "H3'"   EEM  31  
EEM  "H4'"   "H4'"   H   0  1  N  N  N  11.223   -9.291  -19.053   0.111   2.036   0.901  "H4'"   EEM  32  
EEM  "H5'"   "H5'"   H   0  1  N  N  N  13.592   -8.714  -18.410  -1.568   2.268  -0.991  "H5'"   EEM  33  
EEM  "H5'A"  "H5'A"  H   0  0  N  N  N  13.982   -8.671  -20.200  -0.929   0.753  -1.672  "H5'A"  EEM  34  
EEM  HOXT    HOXT    H   0  0  N  N  N  15.246   -5.861  -15.123  -7.666  -3.588   0.459  HOXT    EEM  35  
EEM  HA      HA      H   0  1  N  N  N  16.428   -4.535  -18.116  -5.906  -1.293  -1.658  HA      EEM  36  
EEM  HN      HN      H   0  1  N  N  N  17.791   -6.200  -19.511  -7.564   0.413  -1.535  HN      EEM  37  
EEM  HNA     HNA     H   0  1  N  N  N  18.484   -5.425  -18.253  -7.013   0.915  -0.048  HNA     EEM  38  
EEM  HB      HB      H   0  1  N  N  N  15.633   -5.964  -20.026  -5.145  -0.165   1.073  HB      EEM  39  
EEM  HBA     HBA     H   0  1  N  N  N  15.410   -7.329  -18.845  -4.506  -1.681   0.392  HBA     EEM  40  
EEM  HG      HG      H   0  1  N  N  N  13.843   -5.802  -17.560  -3.609  -0.430  -1.552  HG      EEM  41  
EEM  HGA     HGA     H   0  1  N  N  N  13.914   -4.683  -18.980  -4.248   1.086  -0.871  HGA     EEM  42  
EEM  HE      HE      H   0  1  N  N  N  11.789   -6.664  -17.246  -3.324   2.471   1.177  HE      EEM  43  
EEM  HEA     HEA     H   0  1  N  N  N  10.748   -5.767  -18.402  -3.453   1.254   2.469  HEA     EEM  44  
EEM  HEB     HEB     H   0  1  N  N  N  10.707   -7.562  -18.364  -1.915   2.110   2.203  HEB     EEM  45  
EEM  "HO3'"  "HO3'"  H   0  0  N  N  N  11.295  -12.077  -18.736   1.631   4.461  -1.007  "HO3'"  EEM  46  
EEM  "HO2'"  "HO2'"  H   0  0  N  N  N  13.774  -12.455  -22.078   3.560   3.714  -0.777  "HO2'"  EEM  47  
EEM  H8      H8      H   0  1  N  N  N  12.101  -10.695  -24.606   2.064  -1.532  -1.473  H8      EEM  48  
EEM  HN6     HN6     H   0  1  N  N  N  15.943   -6.425  -25.852   6.334  -3.775  -1.178  HN6     EEM  49  
EEM  HN6A    HN6A    H   0  0  N  N  N  16.737   -7.839  -26.040   7.792  -3.507  -0.386  HN6A    EEM  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EEM  N1     C2      DOUB  Y  N   1  
EEM  C2     N3      SING  Y  N   2  
EEM  C2     H2      SING  N  N   3  
EEM  C4     N3      DOUB  Y  N   4  
EEM  C5     C4      SING  Y  N   5  
EEM  N9     C4      SING  Y  N   6  
EEM  N9     "C1'"   SING  N  N   7  
EEM  "C1'"  "O4'"   SING  N  N   8  
EEM  "C1'"  "C2'"   SING  N  N   9  
EEM  "C1'"  "H1'"   SING  N  N  10  
EEM  "O2'"  "C2'"   SING  N  N  11  
EEM  "C2'"  "C3'"   SING  N  N  12  
EEM  "C2'"  "H2'"   SING  N  N  13  
EEM  "C4'"  "C3'"   SING  N  N  14  
EEM  "O3'"  "C3'"   SING  N  N  15  
EEM  "C3'"  "H3'"   SING  N  N  16  
EEM  "O4'"  "C4'"   SING  N  N  17  
EEM  "C4'"  "C5'"   SING  N  N  18  
EEM  "C4'"  "H4'"   SING  N  N  19  
EEM  "C5'"  "H5'"   SING  N  N  20  
EEM  "C5'"  "H5'A"  SING  N  N  21  
EEM  "C5'"  SE      SING  N  N  22  
EEM  C      O       DOUB  N  N  23  
EEM  CA     C       SING  N  N  24  
EEM  C      OXT     SING  N  N  25  
EEM  OXT    HOXT    SING  N  N  26  
EEM  CB     CA      SING  N  N  27  
EEM  N      CA      SING  N  N  28  
EEM  CA     HA      SING  N  N  29  
EEM  N      HN      SING  N  N  30  
EEM  N      HNA     SING  N  N  31  
EEM  CB     CG      SING  N  N  32  
EEM  CB     HB      SING  N  N  33  
EEM  CB     HBA     SING  N  N  34  
EEM  SE     CG      SING  N  N  35  
EEM  CG     HG      SING  N  N  36  
EEM  CG     HGA     SING  N  N  37  
EEM  SE     CE      SING  N  N  38  
EEM  CE     HE      SING  N  N  39  
EEM  CE     HEA     SING  N  N  40  
EEM  CE     HEB     SING  N  N  41  
EEM  "O3'"  "HO3'"  SING  N  N  42  
EEM  "O2'"  "HO2'"  SING  N  N  43  
EEM  C8     N9      SING  Y  N  44  
EEM  N7     C8      DOUB  Y  N  45  
EEM  C8     H8      SING  N  N  46  
EEM  N7     C5      SING  Y  N  47  
EEM  C6     C5      DOUB  Y  N  48  
EEM  C6     N1      SING  Y  N  49  
EEM  N6     C6      SING  N  N  50  
EEM  N6     HN6     SING  N  N  51  
EEM  N6     HN6A    SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EEM  SMILES            ACDLabs               10.04  "O=C(O)C(N)CC[Se+](C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O"  
EEM  SMILES_CANONICAL  CACTVS                3.341  "C[Se@@+](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
EEM  SMILES            CACTVS                3.341  "C[Se+](CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
EEM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[Se@@+](CC[C@@H](C(=O)O)N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"  
EEM  SMILES            "OpenEye OEToolkits"  1.5.0  "C[Se+](CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"  
EEM  InChI             InChI                 1.03   "InChI=1S/C15H22N6O5Se/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8+,10+,11+,14+,27-/m0/s1"  
EEM  InChIKey          InChI                 1.03   GGJFWMOVUFBSIN-FCKMPRQPSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EEM  "SYSTEMATIC NAME"  ACDLabs               10.04  "[(3S)-3-amino-3-carboxypropyl]{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}methylselenonium (non-preferred name)"  
EEM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EEM  "Create component"      2008-09-03  RCSB  
EEM  "Modify aromatic_flag"  2011-06-04  RCSB  
EEM  "Modify descriptor"     2011-06-04  RCSB  
EEM  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     EEM
_pdbx_chem_comp_synonyms.name        Se-ADENOSYLSELENOMETHIONINE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
