data_D7M
# 
_chem_comp.id                                    D7M 
_chem_comp.name                                  "tert-butyl (2-{[(2R)-2-(cyclopentylamino)-3-oxo-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H34 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-23 
_chem_comp.pdbx_modified_date                    2017-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.585 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D7M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BD5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D7M C20 C1  C 0 1 N N N -18.264 -31.703 -8.525  -3.169 -0.410 -0.994 C20 D7M 1  
D7M C10 C2  C 0 1 N N N -18.704 -32.114 -11.798 2.077  0.331  -0.558 C10 D7M 2  
D7M C12 C3  C 0 1 N N N -18.985 -34.020 -9.289  -0.710 -0.159 -0.795 C12 D7M 3  
D7M C13 C4  C 0 1 N N R -17.778 -33.096 -8.968  -1.930 -0.961 -0.337 C13 D7M 4  
D7M C15 C5  C 0 1 N N N -17.501 -33.473 -6.629  -2.553 -3.249 0.152  C15 D7M 5  
D7M C16 C6  C 0 1 N N N -17.690 -34.866 -6.124  -2.869 -4.567 -0.578 C16 D7M 6  
D7M C17 C7  C 0 1 N N N -16.255 -35.272 -5.991  -2.236 -5.697 0.259  C17 D7M 7  
D7M C18 C8  C 0 1 N N N -15.528 -34.043 -5.463  -2.127 -5.099 1.684  C18 D7M 8  
D7M C19 C9  C 0 1 N N N -16.429 -32.855 -5.762  -1.739 -3.626 1.407  C19 D7M 9  
D7M C01 C10 C 0 1 N N N -18.424 -37.584 -13.664 8.491  -0.175 -0.214 C01 D7M 10 
D7M C02 C11 C 0 1 N N N -16.903 -37.372 -13.820 8.047  1.264  0.057  C02 D7M 11 
D7M C03 C12 C 0 1 N N N -16.130 -38.049 -12.642 8.042  1.520  1.566  C03 D7M 12 
D7M C04 C13 C 0 1 N N N -16.442 -38.078 -15.144 9.017  2.233  -0.622 C04 D7M 13 
D7M O05 O1  O 0 1 N N N -16.625 -35.916 -13.882 6.711  1.466  -0.472 O05 D7M 14 
D7M C06 C14 C 0 1 N N N -17.134 -34.989 -12.994 5.732  0.686  0.024  C06 D7M 15 
D7M O07 O2  O 0 1 N N N -17.297 -35.326 -11.790 5.988  -0.141 0.877  O07 D7M 16 
D7M N08 N1  N 0 1 N N N -17.185 -33.611 -13.290 4.468  0.823  -0.425 N08 D7M 17 
D7M C09 C15 C 0 1 N N N -17.242 -32.510 -12.276 3.403  -0.025 0.115  C09 D7M 18 
D7M S11 S1  S 0 1 N N N -19.710 -33.507 -10.916 0.758  -0.720 0.111  S11 D7M 19 
D7M N14 N2  N 0 1 N N N -16.896 -33.598 -7.940  -1.759 -2.370 -0.717 N14 D7M 20 
D7M O21 O3  O 0 1 N N N -19.524 -31.583 -8.527  -3.573 -0.895 -2.030 O21 D7M 21 
D7M N22 N3  N 0 1 N N N -17.495 -30.607 -8.157  -3.832 0.618  -0.428 N22 D7M 22 
D7M C23 C16 C 0 1 N N N -18.102 -29.318 -7.825  -5.036 1.153  -1.066 C23 D7M 23 
D7M C24 C17 C 0 1 Y N N -18.727 -28.862 -9.141  -5.581 2.289  -0.239 C24 D7M 24 
D7M C25 C18 C 0 1 Y N N -18.052 -28.913 -10.353 -5.164 3.590  -0.471 C25 D7M 25 
D7M C26 C19 C 0 1 Y N N -18.625 -28.564 -11.565 -5.693 4.603  0.315  C26 D7M 26 
D7M C27 C20 C 0 1 Y N N -19.967 -28.177 -11.546 -6.611 4.284  1.297  C27 D7M 27 
D7M N28 N4  N 0 1 Y N N -20.636 -28.144 -10.381 -6.985 3.034  1.490  N28 D7M 28 
D7M C29 C21 C 0 1 Y N N -20.060 -28.488 -9.216  -6.508 2.046  0.758  C29 D7M 29 
D7M H1  H1  H 0 1 N N N -18.613 -31.270 -11.099 1.840  1.377  -0.365 H1  D7M 30 
D7M H2  H2  H 0 1 N N N -19.274 -31.796 -12.684 2.160  0.169  -1.633 H2  D7M 31 
D7M H3  H3  H 0 1 N N N -19.744 -33.925 -8.499  -0.557 -0.308 -1.864 H3  D7M 32 
D7M H4  H4  H 0 1 N N N -18.646 -35.065 -9.348  -0.877 0.900  -0.596 H4  D7M 33 
D7M H5  H5  H 0 1 N N N -17.204 -32.968 -9.897  -2.029 -0.886 0.746  H5  D7M 34 
D7M H6  H6  H 0 1 N N N -18.433 -32.889 -6.628  -3.478 -2.752 0.442  H6  D7M 35 
D7M H7  H7  H 0 1 N N N -18.214 -34.885 -5.157  -3.947 -4.708 -0.643 H7  D7M 36 
D7M H8  H8  H 0 1 N N N -18.230 -35.496 -6.846  -2.433 -4.553 -1.578 H8  D7M 37 
D7M H9  H9  H 0 1 N N N -16.157 -36.109 -5.284  -2.881 -6.576 0.262  H9  D7M 38 
D7M H10 H10 H 0 1 N N N -15.848 -35.568 -6.969  -1.248 -5.949 -0.126 H10 D7M 39 
D7M H11 H11 H 0 1 N N N -15.364 -34.134 -4.379  -3.085 -5.156 2.201  H11 D7M 40 
D7M H12 H12 H 0 1 N N N -14.560 -33.925 -5.972  -1.350 -5.605 2.257  H12 D7M 41 
D7M H13 H13 H 0 1 N N N -15.884 -32.068 -6.303  -0.671 -3.543 1.208  H13 D7M 42 
D7M H14 H14 H 0 1 N N N -16.856 -32.437 -4.839  -2.022 -2.993 2.249  H14 D7M 43 
D7M H15 H15 H 0 1 N N N -18.770 -37.097 -12.741 7.800  -0.865 0.270  H15 D7M 44 
D7M H16 H16 H 0 1 N N N -18.946 -37.146 -14.527 8.495  -0.358 -1.288 H16 D7M 45 
D7M H17 H17 H 0 1 N N N -18.641 -38.661 -13.613 9.494  -0.327 0.184  H17 D7M 46 
D7M H18 H18 H 0 1 N N N -16.426 -37.581 -11.692 9.046  1.369  1.964  H18 D7M 47 
D7M H19 H19 H 0 1 N N N -16.372 -39.122 -12.613 7.726  2.546  1.759  H19 D7M 48 
D7M H20 H20 H 0 1 N N N -15.048 -37.921 -12.792 7.351  0.830  2.049  H20 D7M 49 
D7M H21 H21 H 0 1 N N N -16.656 -39.155 -15.079 9.021  2.050  -1.696 H21 D7M 50 
D7M H22 H22 H 0 1 N N N -16.986 -37.647 -15.998 8.701  3.258  -0.428 H22 D7M 51 
D7M H23 H23 H 0 1 N N N -15.361 -37.927 -15.283 10.021 2.081  -0.224 H23 D7M 52 
D7M H24 H24 H 0 1 N N N -17.183 -33.348 -14.255 4.264  1.483  -1.105 H24 D7M 53 
D7M H25 H25 H 0 1 N N N -16.669 -32.829 -11.393 3.320  0.136  1.190  H25 D7M 54 
D7M H26 H26 H 0 1 N N N -16.773 -31.617 -12.715 3.640  -1.072 -0.078 H26 D7M 55 
D7M H27 H27 H 0 1 N N N -16.701 -34.562 -8.119  -1.994 -2.514 -1.688 H27 D7M 56 
D7M H29 H29 H 0 1 N N N -16.500 -30.701 -8.118  -3.511 1.003  0.402  H29 D7M 57 
D7M H30 H30 H 0 1 N N N -17.340 -28.602 -7.484  -4.788 1.517  -2.063 H30 D7M 58 
D7M H31 H31 H 0 1 N N N -18.870 -29.435 -7.046  -5.787 0.367  -1.143 H31 D7M 59 
D7M H32 H32 H 0 1 N N N -17.024 -29.243 -10.351 -4.444 3.810  -1.245 H32 D7M 60 
D7M H33 H33 H 0 1 N N N -18.059 -28.590 -12.484 -5.390 5.628  0.162  H33 D7M 61 
D7M H34 H34 H 0 1 N N N -20.465 -27.905 -12.465 -7.028 5.067  1.913  H34 D7M 62 
D7M H35 H35 H 0 1 N N N -20.652 -28.473 -8.313  -6.837 1.035  0.946  H35 D7M 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D7M C04 C02 SING N N 1  
D7M O05 C02 SING N N 2  
D7M O05 C06 SING N N 3  
D7M C02 C01 SING N N 4  
D7M C02 C03 SING N N 5  
D7M N08 C06 SING N N 6  
D7M N08 C09 SING N N 7  
D7M C06 O07 DOUB N N 8  
D7M C09 C10 SING N N 9  
D7M C10 S11 SING N N 10 
D7M C26 C27 DOUB Y N 11 
D7M C26 C25 SING Y N 12 
D7M C27 N28 SING Y N 13 
D7M S11 C12 SING N N 14 
D7M N28 C29 DOUB Y N 15 
D7M C25 C24 DOUB Y N 16 
D7M C12 C13 SING N N 17 
D7M C29 C24 SING Y N 18 
D7M C24 C23 SING N N 19 
D7M C13 C20 SING N N 20 
D7M C13 N14 SING N N 21 
D7M O21 C20 DOUB N N 22 
D7M C20 N22 SING N N 23 
D7M N22 C23 SING N N 24 
D7M N14 C15 SING N N 25 
D7M C15 C16 SING N N 26 
D7M C15 C19 SING N N 27 
D7M C16 C17 SING N N 28 
D7M C17 C18 SING N N 29 
D7M C19 C18 SING N N 30 
D7M C10 H1  SING N N 31 
D7M C10 H2  SING N N 32 
D7M C12 H3  SING N N 33 
D7M C12 H4  SING N N 34 
D7M C13 H5  SING N N 35 
D7M C15 H6  SING N N 36 
D7M C16 H7  SING N N 37 
D7M C16 H8  SING N N 38 
D7M C17 H9  SING N N 39 
D7M C17 H10 SING N N 40 
D7M C18 H11 SING N N 41 
D7M C18 H12 SING N N 42 
D7M C19 H13 SING N N 43 
D7M C19 H14 SING N N 44 
D7M C01 H15 SING N N 45 
D7M C01 H16 SING N N 46 
D7M C01 H17 SING N N 47 
D7M C03 H18 SING N N 48 
D7M C03 H19 SING N N 49 
D7M C03 H20 SING N N 50 
D7M C04 H21 SING N N 51 
D7M C04 H22 SING N N 52 
D7M C04 H23 SING N N 53 
D7M N08 H24 SING N N 54 
D7M C09 H25 SING N N 55 
D7M C09 H26 SING N N 56 
D7M N14 H27 SING N N 57 
D7M N22 H29 SING N N 58 
D7M C23 H30 SING N N 59 
D7M C23 H31 SING N N 60 
D7M C25 H32 SING N N 61 
D7M C26 H33 SING N N 62 
D7M C27 H34 SING N N 63 
D7M C29 H35 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D7M SMILES           ACDLabs              12.01 "C(NCc1cccnc1)(C(CSCCNC(OC(C)(C)C)=O)NC2CCCC2)=O"                                                                                                                                          
D7M InChI            InChI                1.03  "InChI=1S/C21H34N4O3S/c1-21(2,3)28-20(27)23-11-12-29-15-18(25-17-8-4-5-9-17)19(26)24-14-16-7-6-10-22-13-16/h6-7,10,13,17-18,25H,4-5,8-9,11-12,14-15H2,1-3H3,(H,23,27)(H,24,26)/t18-/m0/s1" 
D7M InChIKey         InChI                1.03  KBEZAWKDMPYHEN-SFHVURJKSA-N                                                                                                                                                                
D7M SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)NCCSC[C@H](NC1CCCC1)C(=O)NCc2cccnc2"                                                                                                                                        
D7M SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)NCCSC[CH](NC1CCCC1)C(=O)NCc2cccnc2"                                                                                                                                         
D7M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C)OC(=O)NCCSC[C@@H](C(=O)NCc1cccnc1)NC2CCCC2"                                                                                                                                       
D7M SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)(C)OC(=O)NCCSCC(C(=O)NCc1cccnc1)NC2CCCC2"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D7M "SYSTEMATIC NAME" ACDLabs              12.01 "tert-butyl (2-{[(2R)-2-(cyclopentylamino)-3-oxo-3-{[(pyridin-3-yl)methyl]amino}propyl]sulfanyl}ethyl)carbamate"                
D7M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{tert}-butyl ~{N}-[2-[(2~{R})-2-(cyclopentylamino)-3-oxidanylidene-3-(pyridin-3-ylmethylamino)propyl]sulfanylethyl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D7M "Create component" 2017-10-23 RCSB 
D7M "Initial release"  2017-12-13 RCSB 
# 
