data_C7M
#

_chem_comp.id                                   C7M
_chem_comp.name                                 
;(2S,3R)-N-[5-CHLORO-2-(2,3-DIHYDRO-1H-TETRAZOL-1-YL)BENZYL]-3-HYDROXY-4-{[(4-METHOXYPHENYL)SULFONYL]AMINO}-1-PHENYLBUTA
N-2-AMINIUM
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H30 Cl N6 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "INHIBITOR OF THROMBIN"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2005-12-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       546.061
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C7M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2C8W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C7M  C1    C1    C   0  1  N  N  N  -2.102  20.251  46.957   7.827   2.511   0.893  C1    C7M   1  
C7M  O2    O2    O   0  1  N  N  N  -0.995  20.625  46.134   7.920   1.210   1.479  O2    C7M   2  
C7M  C3    C3    C   0  1  Y  N  N   0.191  19.944  46.230   7.011   0.426   0.842  C3    C7M   3  
C7M  C4    C4    C   0  1  Y  N  N   1.214  20.307  45.369   6.871  -0.907   1.200  C4    C7M   4  
C7M  C5    C5    C   0  1  Y  N  N   2.418  19.668  45.399   5.947  -1.702   0.551  C5    C7M   5  
C7M  C6    C6    C   0  1  Y  N  N   2.618  18.630  46.290   5.161  -1.170  -0.455  C6    C7M   6  
C7M  C7    C7    C   0  1  Y  N  N   1.610  18.252  47.155   5.299   0.158  -0.814  C7    C7M   7  
C7M  C8    C8    C   0  1  Y  N  N   0.397  18.909  47.125   6.218   0.959  -0.164  C8    C7M   8  
C7M  S9    S9    S   0  1  N  N  N   4.137  17.764  46.357   3.983  -2.187  -1.281  S9    C7M   9  
C7M  O10   O10   O   0  1  N  N  N   3.773  16.387  46.386   4.430  -3.523  -1.098  O10   C7M  10  
C7M  O11   O11   O   0  1  N  N  N   4.980  18.366  45.388   3.747  -1.563  -2.536  O11   C7M  11  
C7M  N12   N12   N   0  1  N  N  N   4.735  18.042  47.882   2.557  -2.070  -0.447  N12   C7M  12  
C7M  C13   C13   C   0  1  N  N  N   5.150  19.413  48.190   1.847  -0.791  -0.384  C13   C7M  13  
C7M  C14   C14   C   0  1  N  N  R   5.660  19.495  49.635   0.416  -1.025   0.105  C14   C7M  14  
C7M  O16   O16   O   0  1  N  N  N   6.809  18.659  49.747   0.445  -1.507   1.449  O16   C7M  15  
C7M  C17   C17   C   0  1  N  N  S   6.074  20.923  50.029  -0.363   0.291   0.051  C17   C7M  16  
C7M  C19   C19   C   0  1  N  N  N   4.880  21.878  49.998   0.246   1.285   1.042  C19   C7M  17  
C7M  C20   C20   C   0  1  Y  N  N   3.773  21.435  50.914  -0.460   2.611   0.923  C20   C7M  18  
C7M  C21   C21   C   0  1  Y  N  N   2.528  21.123  50.397  -1.497   2.921   1.783  C21   C7M  19  
C7M  C22   C22   C   0  1  Y  N  N   1.515  20.723  51.244  -2.146   4.137   1.673  C22   C7M  20  
C7M  C23   C23   C   0  1  Y  N  N   1.734  20.644  52.608  -1.757   5.043   0.704  C23   C7M  21  
C7M  C24   C24   C   0  1  Y  N  N   2.984  20.952  53.126  -0.719   4.733  -0.155  C24   C7M  22  
C7M  C25   C25   C   0  1  Y  N  N   4.005  21.353  52.276  -0.068   3.519  -0.043  C25   C7M  23  
C7M  N26   N26   N   1  1  N  N  N   7.137  21.429  49.131  -1.767   0.044   0.406  N26   C7M  24  
C7M  C29   C29   C   0  1  N  N  N   7.915  22.543  49.788  -2.390  -0.799  -0.623  C29   C7M  25  
C7M  C30   C30   C   0  1  Y  N  N   9.104  22.859  48.906  -3.806  -1.121  -0.218  C30   C7M  26  
C7M  C31   C31   C   0  1  Y  N  N   9.073  23.992  48.094  -4.098  -2.339   0.363  C31   C7M  27  
C7M  C32   C32   C   0  1  Y  N  N  10.139  24.269  47.244  -5.398  -2.635   0.736  C32   C7M  28  
C7M  CL33  CL33  CL  0  0  N  N  N  10.110  25.689  46.237  -5.762  -4.167   1.467  CL33  C7M  29  
C7M  C34   C34   C   0  1  Y  N  N  11.223  23.401  47.198  -6.408  -1.712   0.527  C34   C7M  30  
C7M  C35   C35   C   0  1  Y  N  N  11.250  22.259  47.987  -6.121  -0.493  -0.054  C35   C7M  31  
C7M  C36   C36   C   0  1  Y  N  N  10.185  21.982  48.835  -4.816  -0.191  -0.424  C36   C7M  32  
C7M  N37   N37   N   0  1  N  N  N  10.256  20.842  49.664  -4.523   1.043  -1.012  N37   C7M  33  
C7M  C38   C38   C   0  1  N  N  N  10.223  19.531  49.342  -4.608   1.344  -2.364  C38   C7M  34  
C7M  N39   N39   N   0  1  N  N  N  10.351  18.855  50.458  -4.267   2.574  -2.546  N39   C7M  35  
C7M  N40   N40   N   0  1  N  N  N  10.479  19.642  51.464  -3.930   3.137  -1.308  N40   C7M  36  
C7M  N41   N41   N   0  1  N  N  N  10.416  20.863  51.063  -4.096   2.165  -0.359  N41   C7M  37  
C7M  H42   H42   H   0  1  N  N  N  -2.506  19.288  46.612   8.050   2.446  -0.172  H42   C7M  38  
C7M  H43   H43   H   0  1  N  N  N  -2.884  21.022  46.892   6.817   2.899   1.030  H43   C7M  39  
C7M  H44   H44   H   0  1  N  N  N  -1.768  20.155  48.001   8.541   3.178   1.374  H44   C7M  40  
C7M  H45   H45   H   0  1  N  N  N   1.055  21.109  44.663   7.485  -1.322   1.986  H45   C7M  41  
C7M  H46   H46   H   0  1  N  N  N   3.211  19.971  44.731   5.837  -2.739   0.829  H46   C7M  42  
C7M  H47   H47   H   0  1  N  N  N   1.771  17.444  47.853   4.685   0.571  -1.601  H47   C7M  43  
C7M  H48   H48   H   0  1  N  N  N  -0.392  18.615  47.801   6.326   1.996  -0.445  H48   C7M  44  
C7M  H49   H49   H   0  1  N  N  N   4.012  17.801  48.530   2.192  -2.850   0.001  H49   C7M  45  
C7M  H50   H50   H   0  1  N  N  N   5.955  19.712  47.503   2.362  -0.122   0.306  H50   C7M  46  
C7M  H51   H51   H   0  1  N  N  N   4.288  20.086  48.072   1.823  -0.340  -1.376  H51   C7M  47  
C7M  H15   H15   H   0  1  N  N  N   4.844  19.178  50.301  -0.070  -1.761  -0.535  H15   C7M  48  
C7M  H52   H52   H   0  1  N  N  N   7.152  18.473  48.881   0.883  -0.827   1.981  H52   C7M  49  
C7M  H18   H18   H   0  1  N  N  N   6.461  20.879  51.058  -0.310   0.704  -0.956  H18   C7M  50  
C7M  H53   H53   H   0  1  N  N  N   4.485  21.893  48.972   0.133   0.903   2.057  H53   C7M  51  
C7M  H54   H54   H   0  1  N  N  N   5.220  22.874  50.316   1.306   1.417   0.820  H54   C7M  52  
C7M  H55   H55   H   0  1  N  N  N   2.350  21.192  49.334  -1.802   2.213   2.539  H55   C7M  53  
C7M  H56   H56   H   0  1  N  N  N   0.546  20.470  50.840  -2.957   4.379   2.344  H56   C7M  54  
C7M  H57   H57   H   0  1  N  N  N   0.934  20.343  53.268  -2.264   5.993   0.618  H57   C7M  55  
C7M  H58   H58   H   0  1  N  N  N   3.162  20.880  54.189  -0.415   5.441  -0.912  H58   C7M  56  
C7M  H59   H59   H   0  1  N  N  N   4.977  21.600  52.676   0.743   3.277  -0.714  H59   C7M  57  
C7M  H27   H27   H   0  1  N  N  N   6.710  21.785  48.300  -1.811  -0.425   1.298  H27   C7M  58  
C7M  H28   H28   H   0  1  N  N  N   7.763  20.680  48.914  -2.259   0.923   0.464  H28   C7M  59  
C7M  H60   H60   H   0  1  N  N  N   8.251  22.237  50.790  -2.396  -0.267  -1.574  H60   C7M  60  
C7M  H61   H61   H   0  1  N  N  N   7.279  23.434  49.897  -1.823  -1.724  -0.727  H61   C7M  61  
C7M  H62   H62   H   0  1  N  N  N   8.221  24.655  48.125  -3.312  -3.061   0.527  H62   C7M  62  
C7M  H63   H63   H   0  1  N  N  N  12.053  23.617  46.542  -7.421  -1.946   0.818  H63   C7M  63  
C7M  H64   H64   H   0  1  N  N  N  12.096  21.589  47.942  -6.910   0.227  -0.217  H64   C7M  64  
C7M  H65   H65   H   0  1  N  N  N  10.112  19.117  48.351  -4.918   0.659  -3.140  H65   C7M  65  
C7M  H40   H40   H   0  1  N  N  N   9.744  19.468  52.119  -3.634   4.048  -1.152  H40   C7M  66  
C7M  H41   H41   H   0  1  N  N  N  11.256  21.349  51.306  -4.858   2.464   0.232  H41   C7M  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C7M  C1   O2    SING  N  N   1  
C7M  C1   H42   SING  N  N   2  
C7M  C1   H43   SING  N  N   3  
C7M  C1   H44   SING  N  N   4  
C7M  O2   C3    SING  N  N   5  
C7M  C3   C4    DOUB  Y  N   6  
C7M  C3   C8    SING  Y  N   7  
C7M  C4   C5    SING  Y  N   8  
C7M  C4   H45   SING  N  N   9  
C7M  C5   C6    DOUB  Y  N  10  
C7M  C5   H46   SING  N  N  11  
C7M  C6   C7    SING  Y  N  12  
C7M  C6   S9    SING  N  N  13  
C7M  C7   C8    DOUB  Y  N  14  
C7M  C7   H47   SING  N  N  15  
C7M  C8   H48   SING  N  N  16  
C7M  S9   O10   DOUB  N  N  17  
C7M  S9   O11   DOUB  N  N  18  
C7M  S9   N12   SING  N  N  19  
C7M  N12  C13   SING  N  N  20  
C7M  N12  H49   SING  N  N  21  
C7M  C13  C14   SING  N  N  22  
C7M  C13  H50   SING  N  N  23  
C7M  C13  H51   SING  N  N  24  
C7M  C14  O16   SING  N  N  25  
C7M  C14  C17   SING  N  N  26  
C7M  C14  H15   SING  N  N  27  
C7M  O16  H52   SING  N  N  28  
C7M  C17  C19   SING  N  N  29  
C7M  C17  N26   SING  N  N  30  
C7M  C17  H18   SING  N  N  31  
C7M  C19  C20   SING  N  N  32  
C7M  C19  H53   SING  N  N  33  
C7M  C19  H54   SING  N  N  34  
C7M  C20  C21   DOUB  Y  N  35  
C7M  C20  C25   SING  Y  N  36  
C7M  C21  C22   SING  Y  N  37  
C7M  C21  H55   SING  N  N  38  
C7M  C22  C23   DOUB  Y  N  39  
C7M  C22  H56   SING  N  N  40  
C7M  C23  C24   SING  Y  N  41  
C7M  C23  H57   SING  N  N  42  
C7M  C24  C25   DOUB  Y  N  43  
C7M  C24  H58   SING  N  N  44  
C7M  C25  H59   SING  N  N  45  
C7M  N26  C29   SING  N  N  46  
C7M  N26  H27   SING  N  N  47  
C7M  N26  H28   SING  N  N  48  
C7M  C29  C30   SING  N  N  49  
C7M  C29  H60   SING  N  N  50  
C7M  C29  H61   SING  N  N  51  
C7M  C30  C31   DOUB  Y  N  52  
C7M  C30  C36   SING  Y  N  53  
C7M  C31  C32   SING  Y  N  54  
C7M  C31  H62   SING  N  N  55  
C7M  C32  CL33  SING  N  N  56  
C7M  C32  C34   DOUB  Y  N  57  
C7M  C34  C35   SING  Y  N  58  
C7M  C34  H63   SING  N  N  59  
C7M  C35  C36   DOUB  Y  N  60  
C7M  C35  H64   SING  N  N  61  
C7M  C36  N37   SING  N  N  62  
C7M  N37  C38   SING  N  N  63  
C7M  N37  N41   SING  N  N  64  
C7M  C38  N39   DOUB  N  N  65  
C7M  C38  H65   SING  N  N  66  
C7M  N39  N40   SING  N  N  67  
C7M  N40  N41   SING  N  N  68  
C7M  N40  H40   SING  N  N  69  
C7M  N41  H41   SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C7M  SMILES            ACDLabs               10.04  "O=S(=O)(c1ccc(OC)cc1)NCC(O)C(Cc2ccccc2)[NH2+]Cc3cc(Cl)ccc3N4C=NNN4"  
C7M  SMILES_CANONICAL  CACTVS                3.341  "COc1ccc(cc1)[S](=O)(=O)NC[C@@H](O)[C@H](Cc2ccccc2)[NH2+]Cc3cc(Cl)ccc3N4NNN=C4"  
C7M  SMILES            CACTVS                3.341  "COc1ccc(cc1)[S](=O)(=O)NC[CH](O)[CH](Cc2ccccc2)[NH2+]Cc3cc(Cl)ccc3N4NNN=C4"  
C7M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "COc1ccc(cc1)S(=O)(=O)NC[C@H]([C@H](Cc2ccccc2)[NH2+]Cc3cc(ccc3N4C=NNN4)Cl)O"  
C7M  SMILES            "OpenEye OEToolkits"  1.5.0  "COc1ccc(cc1)S(=O)(=O)NCC(C(Cc2ccccc2)[NH2+]Cc3cc(ccc3N4C=NNN4)Cl)O"  
C7M  InChI             InChI                 1.03   "InChI=1S/C25H29ClN6O4S/c1-36-21-8-10-22(11-9-21)37(34,35)29-16-25(33)23(13-18-5-3-2-4-6-18)27-15-19-14-20(26)7-12-24(19)32-17-28-30-31-32/h2-12,14,17,23,25,27,29-31,33H,13,15-16H2,1H3/p+1/t23-,25+/m0/s1"  
C7M  InChIKey          InChI                 1.03   LMFQPEFBZUDVPR-UKILVPOCSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C7M  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3R)-N-[5-chloro-2-(2,3-dihydro-1H-tetrazol-1-yl)benzyl]-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl]amino}-1-phenylbutan-2-aminium"  
C7M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[5-chloro-2-(2,3-dihydro-1,2,3,4-tetrazol-1-yl)phenyl]methyl-[(2S,3R)-3-hydroxy-4-[(4-methoxyphenyl)sulfonylamino]-1-phenyl-butan-2-yl]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C7M  "Create component"   2005-12-08  EBI   
C7M  "Modify descriptor"  2011-06-04  RCSB  
C7M  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     C7M
_pdbx_chem_comp_synonyms.name        "INHIBITOR OF THROMBIN"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
