data_C6M
# 
_chem_comp.id                                    C6M 
_chem_comp.name                                  "2-(2,2-diphosphonoethyl)-1-propylpyridin-1-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H18 N O6 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2017-09-14 
_chem_comp.pdbx_modified_date                    2024-04-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        310.201 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C6M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B07 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C6M OAN O1  O 0 1 N N N N N N 40.921 17.591 9.922  0.183  -2.422 0.897  OAN C6M 1  
C6M PAL P1  P 0 1 N N N N N N 41.256 16.804 11.225 1.234  -1.613 0.241  PAL C6M 2  
C6M OAO O2  O 0 1 N N N N N N 39.957 15.999 11.538 2.628  -1.806 1.024  OAO C6M 3  
C6M OAM O3  O 0 1 N N N N N N 42.476 15.940 11.324 1.406  -2.094 -1.286 OAM C6M 4  
C6M CAK C1  C 0 1 N N N N N N 41.294 17.999 12.623 0.757  0.146  0.274  CAK C6M 5  
C6M PAP P2  P 0 1 N N N N N N 39.744 18.929 12.707 2.216  1.179  -0.086 PAP C6M 6  
C6M OAR O4  O 0 1 N N N N N N 38.534 17.998 13.108 3.350  0.910  1.024  OAR C6M 7  
C6M OAS O5  O 0 1 N N N N N N 39.247 19.599 11.385 2.744  0.836  -1.425 OAS C6M 8  
C6M OAQ O6  O 0 1 N N N N N N 40.015 20.040 13.733 1.794  2.732  -0.056 OAQ C6M 9  
C6M CAJ C2  C 0 1 N N N N N N 42.459 19.083 12.595 -0.322 0.402  -0.781 CAJ C6M 10 
C6M CAF C3  C 0 1 Y N N N N N 43.763 18.606 12.304 -1.565 -0.372 -0.426 CAF C6M 11 
C6M CAE C4  C 0 1 Y N N N N N 44.425 19.136 11.214 -1.708 -1.675 -0.867 CAE C6M 12 
C6M CAD C5  C 0 1 Y N N N N N 45.691 18.759 10.846 -2.855 -2.378 -0.535 CAD C6M 13 
C6M CAC C6  C 0 1 Y N N N N N 46.344 17.792 11.542 -3.821 -1.742 0.231  CAC C6M 14 
C6M CAB C7  C 0 1 Y N N N N N 45.731 17.275 12.653 -3.608 -0.438 0.636  CAB C6M 15 
C6M NAA N1  N 1 1 Y N N N N N 44.469 17.683 13.009 -2.501 0.199  0.306  NAA C6M 16 
C6M CAG C8  C 0 1 N N N N N N 43.891 17.023 14.146 -2.310 1.579  0.759  CAG C6M 17 
C6M CAH C9  C 0 1 N N N N N N 44.541 17.434 15.426 -2.683 2.542  -0.370 CAH C6M 18 
C6M CAI C10 C 0 1 N N N N N N 43.608 16.887 16.573 -2.364 3.976  0.058  CAI C6M 19 
C6M H1  H1  H 0 1 N N N N N N 39.302 16.183 10.875 3.363  -1.303 0.648  H1  C6M 20 
C6M H2  H2  H 0 1 N N N N N N 42.954 15.971 10.504 1.734  -2.999 -1.379 H2  C6M 21 
C6M H3  H3  H 0 1 N N N N N N 41.366 17.406 13.547 0.367  0.398  1.260  H3  C6M 22 
C6M H4  H4  H 0 1 N N N N N N 37.841 18.083 12.464 4.157  1.427  0.895  H4  C6M 23 
C6M H5  H5  H 0 1 N N N N N N 39.823 20.885 13.344 1.438  3.027  0.793  H5  C6M 24 
C6M H6  H6  H 0 1 N N N N N N 42.492 19.563 13.584 -0.553 1.466  -0.813 H6  C6M 25 
C6M H7  H7  H 0 1 N N N N N N 42.200 19.832 11.832 0.041  0.079  -1.757 H7  C6M 26 
C6M H8  H8  H 0 1 N N N N N N 43.920 19.885 10.622 -0.935 -2.138 -1.462 H8  C6M 27 
C6M H9  H9  H 0 1 N N N N N N 46.170 19.232 10.001 -2.994 -3.397 -0.865 H9  C6M 28 
C6M H10 H10 H 0 1 N N N N N N 47.316 17.442 11.229 -4.727 -2.260 0.508  H10 C6M 29 
C6M H11 H11 H 0 1 N N N N N N 46.245 16.540 13.254 -4.355 0.064  1.233  H11 C6M 30 
C6M H12 H12 H 0 1 N N N N N N 42.821 17.274 14.195 -2.947 1.768  1.623  H12 C6M 31 
C6M H13 H13 H 0 1 N N N N N N 44.008 15.936 14.022 -1.267 1.729  1.036  H13 C6M 32 
C6M H14 H14 H 0 1 N N N N N N 45.545 16.992 15.505 -2.110 2.293  -1.263 H14 C6M 33 
C6M H15 H15 H 0 1 N N N N N N 44.617 18.530 15.483 -3.748 2.455  -0.585 H15 C6M 34 
C6M H16 H16 H 0 1 N N N N N N 44.032 17.157 17.551 -2.870 4.196  0.998  H16 C6M 35 
C6M H17 H17 H 0 1 N N N N N N 42.606 17.330 16.473 -1.287 4.085  0.190  H17 C6M 36 
C6M H18 H18 H 0 1 N N N N N N 43.535 15.792 16.495 -2.707 4.669  -0.711 H18 C6M 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C6M OAN PAL DOUB N N 1  
C6M CAD CAE DOUB Y N 2  
C6M CAD CAC SING Y N 3  
C6M CAE CAF SING Y N 4  
C6M PAL OAM SING N N 5  
C6M PAL OAO SING N N 6  
C6M PAL CAK SING N N 7  
C6M OAS PAP DOUB N N 8  
C6M CAC CAB DOUB Y N 9  
C6M CAF CAJ SING N N 10 
C6M CAF NAA DOUB Y N 11 
C6M CAJ CAK SING N N 12 
C6M CAK PAP SING N N 13 
C6M CAB NAA SING Y N 14 
C6M PAP OAR SING N N 15 
C6M PAP OAQ SING N N 16 
C6M NAA CAG SING N N 17 
C6M CAG CAH SING N N 18 
C6M CAH CAI SING N N 19 
C6M OAO H1  SING N N 20 
C6M OAM H2  SING N N 21 
C6M CAK H3  SING N N 22 
C6M OAR H4  SING N N 23 
C6M OAQ H5  SING N N 24 
C6M CAJ H6  SING N N 25 
C6M CAJ H7  SING N N 26 
C6M CAE H8  SING N N 27 
C6M CAD H9  SING N N 28 
C6M CAC H10 SING N N 29 
C6M CAB H11 SING N N 30 
C6M CAG H12 SING N N 31 
C6M CAG H13 SING N N 32 
C6M CAH H14 SING N N 33 
C6M CAH H15 SING N N 34 
C6M CAI H16 SING N N 35 
C6M CAI H17 SING N N 36 
C6M CAI H18 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C6M SMILES           ACDLabs              12.01 "O=P(O)(O)C(Cc1cccc[n+]1CCC)P(=O)(O)O"                                                                                        
C6M InChI            InChI                1.06  "InChI=1S/C10H17NO6P2/c1-2-6-11-7-4-3-5-9(11)8-10(18(12,13)14)19(15,16)17/h3-5,7,10H,2,6,8H2,1H3,(H3-,12,13,14,15,16,17)/p+1" 
C6M InChIKey         InChI                1.06  KNULKELAVSFYBS-UHFFFAOYSA-O                                                                                                   
C6M SMILES_CANONICAL CACTVS               3.385 "CCC[n+]1ccccc1CC([P](O)(O)=O)[P](O)(O)=O"                                                                                    
C6M SMILES           CACTVS               3.385 "CCC[n+]1ccccc1CC([P](O)(O)=O)[P](O)(O)=O"                                                                                    
C6M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[n+]1ccccc1CC(P(=O)(O)O)P(=O)(O)O"                                                                                        
C6M SMILES           "OpenEye OEToolkits" 2.0.7 "CCC[n+]1ccccc1CC(P(=O)(O)O)P(=O)(O)O"                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C6M "SYSTEMATIC NAME" ACDLabs              12.01 "2-(2,2-diphosphonoethyl)-1-propylpyridin-1-ium"                   
C6M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[1-phosphono-2-(1-propylpyridin-1-ium-2-yl)ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C6M "Create component" 2017-09-14 RCSB 
C6M "Initial release"  2017-12-13 RCSB 
C6M "Modify charge"    2024-04-25 RCSB 
# 
