data_C3M
#

_chem_comp.id                                   C3M
_chem_comp.name                                 "N-[(2R,3S)-3-AMINO-2-HYDROXY-4-PHENYLBUTYL]NAPHTHALENE-2-SULFONAMIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "INHIBITOR OF THROMBIN"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-12-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.465
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C3M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2C8Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C3M  N1    N1    N  0  1  N  N  N   7.829  21.306  51.810  -2.814   0.458   1.377  N1    C3M   1  
C3M  C2    C2    C  0  1  N  N  S   6.552  20.707  51.402  -2.741   0.477  -0.091  C2    C3M   2  
C3M  C3    C3    C  0  1  N  N  N   5.598  21.824  51.007  -4.113   0.838  -0.664  C3    C3M   3  
C3M  C4    C4    C  0  1  Y  N  N   4.140  21.472  51.178  -5.100  -0.249  -0.328  C4    C3M   4  
C3M  C5    C5    C  0  1  Y  N  N   3.248  21.758  50.159  -5.830  -0.182   0.844  C5    C3M   5  
C3M  C6    C6    C  0  1  Y  N  N   1.909  21.436  50.308  -6.736  -1.180   1.152  C6    C3M   6  
C3M  C7    C7    C  0  1  Y  N  N   1.447  20.849  51.472  -6.912  -2.245   0.288  C7    C3M   7  
C3M  C8    C8    C  0  1  Y  N  N   2.335  20.570  52.484  -6.183  -2.311  -0.884  C8    C3M   8  
C3M  C9    C9    C  0  1  Y  N  N   3.670  20.898  52.356  -5.280  -1.311  -1.195  C9    C3M   9  
C3M  C10   C10   C  0  1  N  N  R   6.855  19.861  50.183  -1.712   1.517  -0.537  C10   C3M  10  
C3M  O11   O11   O  0  1  N  N  N   7.210  20.672  49.057  -1.641   1.536  -1.964  O11   C3M  11  
C3M  C12   C12   C  0  1  N  N  N   5.592  19.103  49.801  -0.340   1.156   0.037  C12   C3M  12  
C3M  N13   N13   N  0  1  N  N  N   6.010  18.107  48.815   0.620   2.214  -0.290  N13   C3M  13  
C3M  S14   S14   S  0  1  N  N  N   4.877  17.097  48.192   2.073   2.286   0.502  S14   C3M  14  
C3M  O15   O15   O  0  1  N  N  N   5.517  16.442  47.100   1.767   2.152   1.883  O15   C3M  15  
C3M  O16   O16   O  0  1  N  N  N   4.379  16.448  49.355   2.776   3.374  -0.083  O16   C3M  16  
C3M  C17   C17   C  0  1  Y  N  N   3.576  18.014  47.415   2.981   0.840   0.069  C17   C3M  17  
C3M  C18   C18   C  0  1  Y  N  N   3.868  18.648  46.192   3.820   0.864  -1.044  C18   C3M  18  
C3M  C19   C19   C  0  1  Y  N  N   2.943  19.390  45.494   4.536  -0.236  -1.406  C19   C3M  19  
C3M  C20   C20   C  0  1  Y  N  N   1.645  19.513  46.028   4.430  -1.415  -0.648  C20   C3M  20  
C3M  C21   C21   C  0  1  Y  N  N   0.661  20.240  45.346   5.153  -2.569  -0.990  C21   C3M  21  
C3M  C22   C22   C  0  1  Y  N  N  -0.590  20.333  45.896   5.026  -3.693  -0.232  C22   C3M  22  
C3M  C23   C23   C  0  1  Y  N  N  -0.909  19.717  47.107   4.187  -3.717   0.881  C23   C3M  23  
C3M  C24   C24   C  0  1  Y  N  N   0.031  18.998  47.788   3.471  -2.617   1.242  C24   C3M  24  
C3M  C25   C25   C  0  1  Y  N  N   1.331  18.872  47.281   3.577  -1.439   0.484  C25   C3M  25  
C3M  C26   C26   C  0  1  Y  N  N   2.321  18.116  47.972   2.858  -0.282   0.829  C26   C3M  26  
C3M  H1N1  1H1N  H  0  0  N  N  N   7.658  22.187  52.250  -3.091   1.384   1.665  H1N1  C3M  27  
C3M  H1N2  2H1N  H  0  0  N  N  N   8.406  21.442  51.005  -3.572  -0.161   1.621  H1N2  C3M  28  
C3M  H2    H2    H  0  1  N  N  N   6.099  20.110  52.207  -2.444  -0.507  -0.452  H2    C3M  29  
C3M  H3C1  1H3C  H  0  0  N  N  N   5.758  22.021  49.937  -4.450   1.781  -0.234  H3C1  C3M  30  
C3M  H3C2  2H3C  H  0  0  N  N  N   5.814  22.696  51.641  -4.038   0.940  -1.747  H3C2  C3M  31  
C3M  H5    H5    H  0  1  N  N  N   3.594  22.230  49.252  -5.692   0.650   1.519  H5    C3M  32  
C3M  H6    H6    H  0  1  N  N  N   1.217  21.646  49.505  -7.305  -1.128   2.068  H6    C3M  33  
C3M  H7    H7    H  0  1  N  N  N   0.399  20.612  51.585  -7.619  -3.025   0.530  H7    C3M  34  
C3M  H8    H8    H  0  1  N  N  N   1.985  20.090  53.386  -6.320  -3.143  -1.559  H8    C3M  35  
C3M  H9    H9    H  0  1  N  N  N   4.352  20.709  53.172  -4.711  -1.363  -2.111  H9    C3M  36  
C3M  H10   H10   H  0  1  N  N  N   7.691  19.191  50.431  -2.009   2.502  -0.175  H10   C3M  37  
C3M  H11   H11   H  0  1  N  N  N   7.289  21.578  49.331  -1.375   0.649  -2.242  H11   C3M  38  
C3M  H121  1H12  H  0  0  N  N  N   4.824  19.777  49.394  -0.415   1.055   1.120  H121  C3M  39  
C3M  H122  2H12  H  0  0  N  N  N   5.148  18.616  50.682  -0.003   0.213  -0.394  H122  C3M  40  
C3M  H13   H13   H  0  1  N  N  N   6.395  18.614  48.044   0.404   2.871  -0.970  H13   C3M  41  
C3M  H18   H18   H  0  1  N  N  N   4.863  18.547  45.784   3.903   1.768  -1.628  H18   C3M  42  
C3M  H19   H19   H  0  1  N  N  N   3.205  19.866  44.561   5.182  -0.203  -2.271  H19   C3M  43  
C3M  H21   H21   H  0  1  N  N  N   0.885  20.718  44.404   5.807  -2.566  -1.849  H21   C3M  44  
C3M  H22   H22   H  0  1  N  N  N  -1.351  20.899  45.378   5.583  -4.580  -0.497  H22   C3M  45  
C3M  H23   H23   H  0  1  N  N  N  -1.907  19.810  47.509   4.104  -4.621   1.465  H23   C3M  46  
C3M  H24   H24   H  0  1  N  N  N  -0.229  18.524  48.723   2.825  -2.650   2.106  H24   C3M  47  
C3M  H26   H26   H  0  1  N  N  N   2.092  17.634  48.911   2.207  -0.284   1.692  H26   C3M  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C3M  N1   C2    SING  N  N   1  
C3M  N1   H1N1  SING  N  N   2  
C3M  N1   H1N2  SING  N  N   3  
C3M  C2   C3    SING  N  N   4  
C3M  C2   C10   SING  N  N   5  
C3M  C2   H2    SING  N  N   6  
C3M  C3   C4    SING  N  N   7  
C3M  C3   H3C1  SING  N  N   8  
C3M  C3   H3C2  SING  N  N   9  
C3M  C4   C5    DOUB  Y  N  10  
C3M  C4   C9    SING  Y  N  11  
C3M  C5   C6    SING  Y  N  12  
C3M  C5   H5    SING  N  N  13  
C3M  C6   C7    DOUB  Y  N  14  
C3M  C6   H6    SING  N  N  15  
C3M  C7   C8    SING  Y  N  16  
C3M  C7   H7    SING  N  N  17  
C3M  C8   C9    DOUB  Y  N  18  
C3M  C8   H8    SING  N  N  19  
C3M  C9   H9    SING  N  N  20  
C3M  C10  O11   SING  N  N  21  
C3M  C10  C12   SING  N  N  22  
C3M  C10  H10   SING  N  N  23  
C3M  O11  H11   SING  N  N  24  
C3M  C12  N13   SING  N  N  25  
C3M  C12  H121  SING  N  N  26  
C3M  C12  H122  SING  N  N  27  
C3M  N13  S14   SING  N  N  28  
C3M  N13  H13   SING  N  N  29  
C3M  S14  O15   DOUB  N  N  30  
C3M  S14  O16   DOUB  N  N  31  
C3M  S14  C17   SING  N  N  32  
C3M  C17  C18   DOUB  Y  N  33  
C3M  C17  C26   SING  Y  N  34  
C3M  C18  C19   SING  Y  N  35  
C3M  C18  H18   SING  N  N  36  
C3M  C19  C20   DOUB  Y  N  37  
C3M  C19  H19   SING  N  N  38  
C3M  C20  C21   SING  Y  N  39  
C3M  C20  C25   SING  Y  N  40  
C3M  C21  C22   DOUB  Y  N  41  
C3M  C21  H21   SING  N  N  42  
C3M  C22  C23   SING  Y  N  43  
C3M  C22  H22   SING  N  N  44  
C3M  C23  C24   DOUB  Y  N  45  
C3M  C23  H23   SING  N  N  46  
C3M  C24  C25   SING  Y  N  47  
C3M  C24  H24   SING  N  N  48  
C3M  C25  C26   DOUB  Y  N  49  
C3M  C26  H26   SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C3M  SMILES            ACDLabs               10.04  "O=S(=O)(c2cc1ccccc1cc2)NCC(O)C(N)Cc3ccccc3"  
C3M  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](Cc1ccccc1)[C@H](O)CN[S](=O)(=O)c2ccc3ccccc3c2"  
C3M  SMILES            CACTVS                3.341  "N[CH](Cc1ccccc1)[CH](O)CN[S](=O)(=O)c2ccc3ccccc3c2"  
C3M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)C[C@@H]([C@@H](CNS(=O)(=O)c2ccc3ccccc3c2)O)N"  
C3M  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc(cc1)CC(C(CNS(=O)(=O)c2ccc3ccccc3c2)O)N"  
C3M  InChI             InChI                 1.03   "InChI=1S/C20H22N2O3S/c21-19(12-15-6-2-1-3-7-15)20(23)14-22-26(24,25)18-11-10-16-8-4-5-9-17(16)13-18/h1-11,13,19-20,22-23H,12,14,21H2/t19-,20+/m0/s1"  
C3M  InChIKey          InChI                 1.03   QSSWSEQPKCCATQ-VQTJNVASSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C3M  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-[(2R,3S)-3-amino-2-hydroxy-4-phenylbutyl]naphthalene-2-sulfonamide"  
C3M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-[(2R,3S)-3-amino-2-hydroxy-4-phenyl-butyl]naphthalene-2-sulfonamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C3M  "Create component"   2005-12-08  EBI   
C3M  "Modify descriptor"  2011-06-04  RCSB  
C3M  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     C3M
_pdbx_chem_comp_synonyms.name        "INHIBITOR OF THROMBIN"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
