data_BEM
#

_chem_comp.id                                   BEM
_chem_comp.name                                 "beta-D-mannopyranuronic acid"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H10 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;beta-D-mannuronic acid; D-mannuronic acid; mannuronic acid; (2S,3S,4S,5S,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic
acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-11-05
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       194.139
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BEM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZAA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  BEM  "beta-D-mannuronic acid"                                        PDB  ?  
2  BEM  "D-mannuronic acid"                                             PDB  ?  
3  BEM  "mannuronic acid"                                               PDB  ?  
4  BEM  "(2S,3S,4S,5S,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic acid"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BEM  C1    C1   C  0  1  N  N  R  -6.634   1.266   0.923   1.353   1.165  -0.692  C1    BEM   1  
BEM  C2    C2   C  0  1  N  N  S  -6.348   1.063  -0.555   1.965  -0.110  -0.106  C2    BEM   2  
BEM  O2    O2   O  0  1  N  N  N  -7.555   0.650  -1.189   2.080   0.023   1.312  O2    BEM   3  
BEM  C3    C3   C  0  1  N  N  S  -5.802   2.377  -1.146   1.058  -1.300  -0.437  C3    BEM   4  
BEM  O3    O3   O  0  1  N  N  N  -5.658   2.266  -2.559   1.583  -2.484   0.169  O3    BEM   5  
BEM  C4    C4   C  0  1  N  N  S  -6.664   3.614  -0.752  -0.346  -1.025   0.109  C4    BEM   6  
BEM  O4    O4   O  0  1  N  N  N  -5.918   4.843  -0.870  -1.219  -2.096  -0.257  O4    BEM   7  
BEM  C5    C5   C  0  1  N  N  S  -7.024   3.590   0.748  -0.868   0.286  -0.486  C5    BEM   8  
BEM  O5    O5   O  0  1  N  N  N  -7.593   2.342   1.000   0.036   1.345  -0.167  O5    BEM   9  
BEM  C6    C6   C  0  1  N  N  N  -8.082   4.556   1.296  -2.226   0.594   0.092  C6    BEM  10  
BEM  O6B   O6A  O  0  1  N  N  N  -8.113   4.692   2.543  -3.265  -0.216  -0.167  O6B   BEM  11  
BEM  O6A   O6B  O  0  1  N  N  N  -8.853   5.147   0.511  -2.380   1.570   0.787  O6A   BEM  12  
BEM  O1    O1   O  0  1  N  Y  N  -7.299   0.131   1.439   2.164   2.288  -0.339  O1    BEM  13  
BEM  H1    H1   H  0  1  N  N  N  -5.699   1.455   1.471   1.304   1.079  -1.777  H1    BEM  14  
BEM  H2    H2   H  0  1  N  N  N  -5.587   0.285  -0.716   2.952  -0.273  -0.538  H2    BEM  15  
BEM  HO2   HO2  H  0  1  N  Y  N  -8.240   0.558  -0.537   2.638   0.762   1.593  HO2   BEM  16  
BEM  H3    H3   H  0  1  N  N  N  -4.807   2.546  -0.708   1.010  -1.432  -1.518  H3    BEM  17  
BEM  HO3   HO3  H  0  1  N  Y  N  -6.517   2.241  -2.964   2.472  -2.718  -0.131  HO3   BEM  18  
BEM  H4    H4   H  0  1  N  N  N  -7.538   3.569  -1.418  -0.306  -0.942   1.195  H4    BEM  19  
BEM  HO4   HO4  H  0  1  N  Y  N  -5.754   5.199  -0.005  -2.127  -1.988   0.056  HO4   BEM  20  
BEM  H5    H5   H  0  1  N  N  N  -6.072   3.865   1.226  -0.947   0.188  -1.568  H5    BEM  21  
BEM  HO1   HO1  H  0  1  N  Y  N  -7.448  -0.494   0.740   1.835   3.132  -0.677  HO1   BEM  22  
BEM  HO6B  HOA  H  0  0  N  N  N  -8.802   5.302   2.778  -4.116   0.022   0.226  HO6B  BEM  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BEM  O3   C3    SING  N  N   1  
BEM  O2   C2    SING  N  N   2  
BEM  C3   C4    SING  N  N   3  
BEM  C3   C2    SING  N  N   4  
BEM  O4   C4    SING  N  N   5  
BEM  C4   C5    SING  N  N   6  
BEM  C2   C1    SING  N  N   7  
BEM  O6A  C6    DOUB  N  N   8  
BEM  C5   O5    SING  N  N   9  
BEM  C5   C6    SING  N  N  10  
BEM  C1   O5    SING  N  N  11  
BEM  C1   O1    SING  N  N  12  
BEM  C6   O6B   SING  N  N  13  
BEM  C1   H1    SING  N  N  14  
BEM  C2   H2    SING  N  N  15  
BEM  O2   HO2   SING  N  N  16  
BEM  C3   H3    SING  N  N  17  
BEM  O3   HO3   SING  N  N  18  
BEM  C4   H4    SING  N  N  19  
BEM  O4   HO4   SING  N  N  20  
BEM  C5   H5    SING  N  N  21  
BEM  O1   HO1   SING  N  N  22  
BEM  O6B  HO6B  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BEM  SMILES            ACDLabs               10.04  "O=C(O)C1OC(O)C(O)C(O)C1O"  
BEM  SMILES_CANONICAL  CACTVS                3.341  "O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@@H]1O)C(O)=O"  
BEM  SMILES            CACTVS                3.341  "O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O"  
BEM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[C@@H]1([C@@H]([C@H](O[C@H]([C@H]1O)O)C(=O)O)O)O"  
BEM  SMILES            "OpenEye OEToolkits"  1.5.0  "C1(C(C(OC(C1O)O)C(=O)O)O)O"  
BEM  InChI             InChI                 1.03   "InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2-,3-,4-,6+/m0/s1"  
BEM  InChIKey          InChI                 1.03   AEMOLEFTQBMNLQ-SYJWYVCOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BEM  "SYSTEMATIC NAME"                      ACDLabs               10.04  "beta-D-mannopyranuronic acid"  
BEM  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2S,3S,4S,5S,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic acid"  
BEM  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DManpAb  
BEM  "COMMON NAME"                          GMML                  1.0    "b-D-mannopyranuronic acid"  
BEM  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-ManpA  
BEM  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    ManA  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
BEM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
BEM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
BEM  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
BEM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BEM  "Create component"          2007-11-05  PDBJ  
BEM  "Modify descriptor"         2011-06-04  RCSB  
BEM  "Modify leaving atom flag"  2011-12-16  PDBJ  
BEM  "Other modification"        2019-08-12  RCSB  
BEM  "Other modification"        2019-12-19  RCSB  
BEM  "Other modification"        2020-07-03  RCSB  
BEM  "Modify name"               2020-07-17  RCSB  
BEM  "Modify synonyms"           2020-07-17  RCSB  
BEM  "Modify atom id"            2020-07-17  RCSB  
BEM  "Modify component atom id"  2020-07-17  RCSB  
##
