data_ABM
#

_chem_comp.id                                   ABM
_chem_comp.name                                 "METHYL PHOSPHONIC ACID ADENOSINE ESTER"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 N5 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ALPHA-METHYLENE ADENOSINE MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-12-16
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       345.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ABM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1DKU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ABM  P       P     P  0  1  N  N  S  27.599  50.279  49.750  -0.998  -0.075   4.699  P       ABM   1  
ABM  CM      CM    C  0  1  N  N  N  29.108  49.287  49.619  -2.263  -1.174   5.417  CM      ABM   2  
ABM  O2P     O2P   O  0  1  N  N  N  27.850  51.490  48.808   0.077   0.150   5.689  O2P     ABM   3  
ABM  O3P     O3P   O  0  1  N  N  N  27.425  50.533  51.247  -1.671   1.333   4.307  O3P     ABM   4  
ABM  "O5'"   O5*   O  0  1  N  N  N  26.445  49.271  49.202  -0.379  -0.760   3.380  "O5'"   ABM   5  
ABM  "C5'"   C5*   C  0  1  N  N  N  25.249  49.714  48.448   0.600   0.144   2.866  "C5'"   ABM   6  
ABM  "C4'"   C4*   C  0  1  N  N  R  24.893  48.793  47.239   1.230  -0.449   1.605  "C4'"   ABM   7  
ABM  "O4'"   O4*   O  0  1  N  N  N  24.399  47.467  47.661   0.224  -0.630   0.594  "O4'"   ABM   8  
ABM  "C3'"   C3*   C  0  1  N  N  S  23.819  49.413  46.279   2.284   0.522   1.038  "C3'"   ABM   9  
ABM  "O3'"   O3*   O  0  1  N  N  N  24.328  49.418  44.920   3.574  -0.091   1.004  "O3'"   ABM  10  
ABM  "C2'"   C2*   C  0  1  N  N  R  22.611  48.468  46.339   1.786   0.820  -0.400  "C2'"   ABM  11  
ABM  "O2'"   O2*   O  0  1  N  N  N  22.046  48.269  45.004   2.878   0.849  -1.320  "O2'"   ABM  12  
ABM  "C1'"   C1*   C  0  1  N  N  R  23.134  47.148  46.982   0.859  -0.390  -0.679  "C1'"   ABM  13  
ABM  N9      N9    N  0  1  Y  N  N  22.174  46.573  47.983  -0.138  -0.056  -1.698  N9      ABM  14  
ABM  C8      C8    C  0  1  Y  N  N  20.935  47.026  48.375  -1.340   0.549  -1.481  C8      ABM  15  
ABM  N7      N7    N  0  1  Y  N  N  20.270  46.194  49.155  -1.975   0.694  -2.608  N7      ABM  16  
ABM  C5      C5    C  0  1  Y  N  N  21.110  45.089  49.208  -1.222   0.194  -3.617  C5      ABM  17  
ABM  C6      C6    C  0  1  Y  N  N  21.054  43.880  49.948  -1.385   0.077  -5.008  C6      ABM  18  
ABM  N6      N6    N  0  1  N  N  N  20.066  43.565  50.771  -2.533   0.540  -5.627  N6      ABM  19  
ABM  N1      N1    N  0  1  Y  N  N  21.950  42.938  49.634  -0.411  -0.486  -5.714  N1      ABM  20  
ABM  C2      C2    C  0  1  Y  N  N  22.967  43.278  48.819   0.687  -0.931  -5.132  C2      ABM  21  
ABM  N3      N3    N  0  1  Y  N  N  23.284  44.490  48.305   0.883  -0.843  -3.833  N3      ABM  22  
ABM  C4      C4    C  0  1  Y  N  N  22.279  45.345  48.526  -0.032  -0.289  -3.046  C4      ABM  23  
ABM  HM1     HM1   H  0  1  N  N  N  28.928  48.418  50.294  -2.682  -0.711   6.310  HM1     ABM  24  
ABM  HM2     HM2   H  0  1  N  N  N  29.378  49.004  48.574  -3.056  -1.341   4.688  HM2     ABM  25  
ABM  HM3     HM3   H  0  1  N  N  N  30.044  49.850  49.840  -1.807  -2.128   5.683  HM3     ABM  26  
ABM  HOP3    3HOP  H  0  0  N  N  N  26.633  51.053  51.315  -2.366   1.141   3.661  HOP3    ABM  27  
ABM  "H5'1"  1H5*  H  0  0  N  N  N  24.373  49.825  49.129   0.124   1.094   2.622  "H5'1"  ABM  28  
ABM  "H5'2"  2H5*  H  0  0  N  N  N  25.362  50.772  48.116   1.373   0.307   3.617  "H5'2"  ABM  29  
ABM  "H4'"   H4*   H  0  1  N  N  N  25.858  48.686  46.692   1.697  -1.405   1.839  "H4'"   ABM  30  
ABM  "H3'"   H3*   H  0  1  N  N  N  23.561  50.456  46.574   2.313   1.438   1.629  "H3'"   ABM  31  
ABM  "HO3'"  *HO3  H  0  0  N  N  N  23.677  49.793  44.338   4.173   0.541   0.586  "HO3'"  ABM  32  
ABM  "H2'"   H2*   H  0  1  N  N  N  21.776  48.884  46.949   1.225   1.754  -0.433  "H2'"   ABM  33  
ABM  "HO2'"  *HO2  H  0  0  N  N  N  21.298  47.684  45.041   3.414   1.622  -1.094  "HO2'"  ABM  34  
ABM  "H1'"   H1*   H  0  1  N  N  N  23.262  46.384  46.179   1.443  -1.258  -0.986  "H1'"   ABM  35  
ABM  H8      H8    H  0  1  N  N  N  20.501  47.996  48.081  -1.712   0.861  -0.516  H8      ABM  36  
ABM  HN61    1HN6  H  0  0  N  N  N  20.025  42.695  51.303  -2.634   0.454  -6.588  HN61    ABM  37  
ABM  HN62    2HN6  H  0  0  N  N  N  19.198  43.631  50.238  -3.236   0.950  -5.101  HN62    ABM  38  
ABM  H2      H2    H  0  1  N  N  N  23.633  42.447  48.532   1.453  -1.383  -5.744  H2      ABM  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ABM  P      CM      SING  N  N   1  
ABM  P      O2P     DOUB  N  N   2  
ABM  P      O3P     SING  N  N   3  
ABM  P      "O5'"   SING  N  N   4  
ABM  CM     HM1     SING  N  N   5  
ABM  CM     HM2     SING  N  N   6  
ABM  CM     HM3     SING  N  N   7  
ABM  O3P    HOP3    SING  N  N   8  
ABM  "O5'"  "C5'"   SING  N  N   9  
ABM  "C5'"  "C4'"   SING  N  N  10  
ABM  "C5'"  "H5'1"  SING  N  N  11  
ABM  "C5'"  "H5'2"  SING  N  N  12  
ABM  "C4'"  "O4'"   SING  N  N  13  
ABM  "C4'"  "C3'"   SING  N  N  14  
ABM  "C4'"  "H4'"   SING  N  N  15  
ABM  "O4'"  "C1'"   SING  N  N  16  
ABM  "C3'"  "O3'"   SING  N  N  17  
ABM  "C3'"  "C2'"   SING  N  N  18  
ABM  "C3'"  "H3'"   SING  N  N  19  
ABM  "O3'"  "HO3'"  SING  N  N  20  
ABM  "C2'"  "O2'"   SING  N  N  21  
ABM  "C2'"  "C1'"   SING  N  N  22  
ABM  "C2'"  "H2'"   SING  N  N  23  
ABM  "O2'"  "HO2'"  SING  N  N  24  
ABM  "C1'"  N9      SING  N  N  25  
ABM  "C1'"  "H1'"   SING  N  N  26  
ABM  N9     C8      SING  Y  N  27  
ABM  N9     C4      SING  Y  N  28  
ABM  C8     N7      DOUB  Y  N  29  
ABM  C8     H8      SING  N  N  30  
ABM  N7     C5      SING  Y  N  31  
ABM  C5     C6      SING  Y  N  32  
ABM  C5     C4      DOUB  Y  N  33  
ABM  C6     N6      SING  N  N  34  
ABM  C6     N1      DOUB  Y  N  35  
ABM  N6     HN61    SING  N  N  36  
ABM  N6     HN62    SING  N  N  37  
ABM  N1     C2      SING  Y  N  38  
ABM  C2     N3      DOUB  Y  N  39  
ABM  C2     H2      SING  N  N  40  
ABM  N3     C4      SING  Y  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ABM  SMILES            ACDLabs               10.04  "O=P(O)(OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C"  
ABM  SMILES_CANONICAL  CACTVS                3.341  "C[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
ABM  SMILES            CACTVS                3.341  "C[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
ABM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"  
ABM  SMILES            "OpenEye OEToolkits"  1.5.0  "CP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"  
ABM  InChI             InChI                 1.03   "InChI=1S/C11H16N5O6P/c1-23(19,20)21-2-5-7(17)8(18)11(22-5)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17-18H,2H2,1H3,(H,19,20)(H2,12,13,14)/t5-,7-,8-,11-/m1/s1"  
ABM  InChIKey          InChI                 1.03   PXSSQXBLDTZHLF-IOSLPCCCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ABM  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine"  
ABM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-methyl-phosphinic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ABM  "Create component"   1999-12-16  RCSB  
ABM  "Modify descriptor"  2011-06-04  RCSB  
ABM  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ABM
_pdbx_chem_comp_synonyms.name        "ALPHA-METHYLENE ADENOSINE MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
