data_A2M
# 
_chem_comp.id                                    A2M 
_chem_comp.name                                  
;2'-O-methyladenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2002-07-25 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         A39 
_chem_comp.formula_weight                        361.248 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     A2M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A2M P      P      P 0 1 N N N 50.664 27.779 18.527 4.877  1.015  0.024  P      A2M 1  
A2M OP1    OP1    O 0 1 N N N 51.940 27.616 19.266 5.886  -0.021 -0.291 OP1    A2M 2  
A2M OP3    OP3    O 0 1 N Y N 50.125 26.648 17.728 4.576  1.890  -1.293 OP3    A2M 3  
A2M "O5'"  "O5'"  O 0 1 N N N 50.864 29.067 17.611 3.518  0.307  0.520  "O5'"  A2M 4  
A2M "C5'"  "C5'"  C 0 1 N N N 49.752 29.707 17.004 2.831  -0.683 -0.248 "C5'"  A2M 5  
A2M "C4'"  "C4'"  C 0 1 N N R 50.168 31.031 16.415 1.585  -1.143 0.511  "C4'"  A2M 6  
A2M "O4'"  "O4'"  O 0 1 N N N 50.717 31.876 17.452 0.642  -0.062 0.604  "O4'"  A2M 7  
A2M "C3'"  "C3'"  C 0 1 N N R 51.275 30.851 15.387 0.896  -2.287 -0.258 "C3'"  A2M 8  
A2M "O3'"  "O3'"  O 0 1 N N N 50.978 31.673 14.241 0.842  -3.468 0.544  "O3'"  A2M 9  
A2M "C2'"  "C2'"  C 0 1 N N R 52.567 31.112 16.153 -0.531 -1.754 -0.533 "C2'"  A2M 10 
A2M "O2'"  "O2'"  O 0 1 N N N 53.590 31.736 15.432 -1.505 -2.782 -0.342 "O2'"  A2M 11 
A2M "C1'"  "C1'"  C 0 1 N N R 52.081 32.074 17.225 -0.677 -0.647 0.541  "C1'"  A2M 12 
A2M "CM'"  "CM'"  C 0 1 N N N 54.590 30.765 14.967 -1.812 -3.520 -1.526 "CM'"  A2M 13 
A2M N9     N9     N 0 1 Y N N 52.783 32.170 18.493 -1.664 0.352  0.123  N9     A2M 14 
A2M C8     C8     C 0 1 Y N N 53.139 31.208 19.402 -1.412 1.486  -0.589 C8     A2M 15 
A2M N7     N7     N 0 1 Y N N 53.768 31.688 20.451 -2.518 2.143  -0.785 N7     A2M 16 
A2M C5     C5     C 0 1 Y N N 53.823 33.056 20.207 -3.547 1.473  -0.213 C5     A2M 17 
A2M C6     C6     C 0 1 Y N N 54.354 34.130 20.943 -4.931 1.694  -0.105 C6     A2M 18 
A2M N6     N6     N 0 1 N N N 54.940 33.987 22.134 -5.516 2.815  -0.666 N6     A2M 19 
A2M N1     N1     N 0 1 Y N N 54.251 35.373 20.410 -5.665 0.799  0.549  N1     A2M 20 
A2M C2     C2     C 0 1 Y N N 53.639 35.512 19.226 -5.116 -0.275 1.087  C2     A2M 21 
A2M N3     N3     N 0 1 Y N N 53.091 34.579 18.448 -3.826 -0.522 1.011  N3     A2M 22 
A2M C4     C4     C 0 1 Y N N 53.224 33.361 19.005 -3.013 0.313  0.372  C4     A2M 23 
A2M HOP3   HOP3   H 0 0 N Y N 50.711 25.904 17.796 3.922  2.590  -1.160 HOP3   A2M 24 
A2M "H5'"  "H5'"  H 0 1 N N N 49.357 29.064 16.204 2.536  -0.259 -1.208 "H5'"  A2M 25 
A2M "H5''" "H5''" H 0 0 N N N 48.974 29.877 17.763 3.490  -1.535 -0.415 "H5''" A2M 26 
A2M "H4'"  "H4'"  H 0 1 N N N 49.275 31.474 15.951 1.863  -1.480 1.510  "H4'"  A2M 27 
A2M "H3'"  "H3'"  H 0 1 N N N 51.375 29.850 14.941 1.418  -2.487 -1.194 "H3'"  A2M 28 
A2M "HO3'" "HO3'" H 0 0 N N N 51.663 31.570 13.591 1.711  -3.813 0.796  "HO3'" A2M 29 
A2M "H2'"  "H2'"  H 0 1 N N N 53.022 30.165 16.479 -0.603 -1.335 -1.537 "H2'"  A2M 30 
A2M "H1'"  "H1'"  H 0 1 N N N 52.319 33.047 16.771 -0.950 -1.079 1.504  "H1'"  A2M 31 
A2M "HM'1" "HM'1" H 0 0 N N N 55.377 31.289 14.405 -2.558 -4.281 -1.297 "HM'1" A2M 32 
A2M "HM'2" "HM'2" H 0 0 N N N 55.036 30.255 15.833 -2.203 -2.843 -2.285 "HM'2" A2M 33 
A2M "HM'3" "HM'3" H 0 0 N N N 54.105 30.024 14.314 -0.907 -4.000 -1.899 "HM'3" A2M 34 
A2M H8     H8     H 0 1 N N N 52.924 30.158 19.269 -0.438 1.795  -0.939 H8     A2M 35 
A2M H61    H61    H 0 1 N N N 55.232 34.882 22.472 -4.969 3.461  -1.141 H61    A2M 36 
A2M H62    H62    H 0 1 N N N 54.291 33.584 22.779 -6.472 2.956  -0.584 H62    A2M 37 
A2M H2     H2     H 0 1 N N N 53.582 36.522 18.849 -5.750 -0.976 1.610  H2     A2M 38 
A2M OP2    OP2    O 0 1 N N N 49.473 27.787 19.768 5.438  1.974  1.189  OP2    A2M 39 
A2M HOP2   HOP2   H 0 0 N N N 49.895 27.688 20.613 6.257  2.434  0.959  HOP2   A2M 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A2M P     OP1    DOUB N N 1  
A2M P     OP3    SING N N 2  
A2M P     "O5'"  SING N N 3  
A2M OP3   HOP3   SING N N 4  
A2M "O5'" "C5'"  SING N N 5  
A2M "C5'" "C4'"  SING N N 6  
A2M "C5'" "H5'"  SING N N 7  
A2M "C5'" "H5''" SING N N 8  
A2M "C4'" "O4'"  SING N N 9  
A2M "C4'" "C3'"  SING N N 10 
A2M "C4'" "H4'"  SING N N 11 
A2M "O4'" "C1'"  SING N N 12 
A2M "C3'" "O3'"  SING N N 13 
A2M "C3'" "C2'"  SING N N 14 
A2M "C3'" "H3'"  SING N N 15 
A2M "O3'" "HO3'" SING N N 16 
A2M "C2'" "O2'"  SING N N 17 
A2M "C2'" "C1'"  SING N N 18 
A2M "C2'" "H2'"  SING N N 19 
A2M "O2'" "CM'"  SING N N 20 
A2M "C1'" N9     SING N N 21 
A2M "C1'" "H1'"  SING N N 22 
A2M "CM'" "HM'1" SING N N 23 
A2M "CM'" "HM'2" SING N N 24 
A2M "CM'" "HM'3" SING N N 25 
A2M N9    C8     SING Y N 26 
A2M N9    C4     SING Y N 27 
A2M C8    N7     DOUB Y N 28 
A2M C8    H8     SING N N 29 
A2M N7    C5     SING Y N 30 
A2M C5    C6     SING Y N 31 
A2M C5    C4     DOUB Y N 32 
A2M C6    N6     SING N N 33 
A2M C6    N1     DOUB Y N 34 
A2M N6    H61    SING N N 35 
A2M N6    H62    SING N N 36 
A2M N1    C2     SING Y N 37 
A2M C2    N3     DOUB Y N 38 
A2M C2    H2     SING N N 39 
A2M N3    C4     SING Y N 40 
A2M P     OP2    SING N N 41 
A2M OP2   HOP2   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A2M SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(OC)C3O"                                                                                                                          
A2M SMILES_CANONICAL CACTVS               3.370 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3c(N)ncnc23"                                                                                                      
A2M SMILES           CACTVS               3.370 "CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3c(N)ncnc23"                                                                                                            
A2M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)COP(=O)(O)O)O"                                                                                                          
A2M SMILES           "OpenEye OEToolkits" 1.7.0 "COC1C(C(OC1n2cnc3c2ncnc3N)COP(=O)(O)O)O"                                                                                                                            
A2M InChI            InChI                1.03  "InChI=1S/C11H16N5O7P/c1-21-8-7(17)5(2-22-24(18,19)20)23-11(8)16-4-15-6-9(12)13-3-14-10(6)16/h3-5,7-8,11,17H,2H2,1H3,(H2,12,13,14)(H2,18,19,20)/t5-,7-,8-,11-/m1/s1" 
A2M InChIKey         InChI                1.03  TVGFEBXIZUYVFR-IOSLPCCCSA-N                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A2M "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-O-methyladenosine 5'-(dihydrogen phosphate)
;
A2M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-methoxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A2M "Create component"     2002-07-25 RCSB 
A2M "Other modification"   2010-12-21 RCSB 
A2M "Modify aromatic_flag" 2011-06-04 RCSB 
A2M "Modify descriptor"    2011-06-04 RCSB 
# 
