data_92M
#

_chem_comp.id                                   92M
_chem_comp.name                                 
;9-cyclopentyl-2-(4-(4-hydroxypiperidin-1-yl)-2-methoxyphenylamino)-5-methyl-8,9-dihydro-5H-pyrimido[4,5-b][1,4]diazepin
-6(7H)-one
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H34 N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;9-cyclopentyl-2-{[4-(4-hydroxypiperidin-1-yl)-2-methoxyphenyl]amino}-5-methyl-5,7,8,9-tetrahydro-6H-pyrimido[4,5-b][1,4
]diazepin-6-one
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-05-05
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       466.576
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    92M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3H9F
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
92M  C4    C4    C  0  1  Y  N  N   1.609  20.611  45.904  -3.212  -0.251  -0.148  C4    92M   1  
92M  C5    C5    C  0  1  Y  N  N   1.879  21.936  45.624  -2.810  -1.590  -0.072  C5    92M   2  
92M  C6    C6    C  0  1  Y  N  N   1.269  22.926  46.381  -1.460  -1.881  -0.034  C6    92M   3  
92M  N1    N1    N  0  1  Y  N  N   0.448  22.569  47.345  -0.589  -0.881  -0.082  N1    92M   4  
92M  N3    N3    N  0  1  Y  N  N   0.764  20.312  46.893  -2.283   0.696  -0.201  N3    92M   5  
92M  CAT   CAT   C  0  1  N  N  N  -1.492  15.729  52.268   5.534  -0.952   1.330  CAT   92M   6  
92M  CAU   CAU   C  0  1  N  N  N  -0.951  14.324  52.550   7.026  -1.163   1.597  CAU   92M   7  
92M  CAV   CAV   C  0  1  N  N  N  -1.918  13.292  51.924   7.744  -1.431   0.271  CAV   92M   8  
92M  OAW   OAW   O  0  1  N  N  N  -1.423  11.946  52.062   9.146  -1.572   0.508  OAW   92M   9  
92M  CAX   CAX   C  0  1  N  N  N  -2.145  13.624  50.430   7.502  -0.255  -0.678  CAX   92M  10  
92M  CAY   CAY   C  0  1  N  N  N  -1.233  14.757  49.932   5.996  -0.070  -0.880  CAY   92M  11  
92M  NAS   NAS   N  0  1  N  N  N  -1.291  15.940  50.822   5.355   0.184   0.417  NAS   92M  12  
92M  CAR   CAR   C  0  1  Y  N  N  -1.128  17.214  50.281   3.998   0.488   0.255  CAR   92M  13  
92M  CAZ   CAZ   C  0  1  Y  N  N  -0.955  18.330  51.102   3.616   1.535  -0.573  CAZ   92M  14  
92M  CBA   CBA   C  0  1  Y  N  N  -0.765  19.586  50.515   2.273   1.835  -0.733  CBA   92M  15  
92M  OBB   OBB   O  0  1  N  N  N  -0.574  20.693  51.257   1.897   2.860  -1.544  OBB   92M  16  
92M  CBC   CBC   C  0  1  N  N  N  -0.649  20.483  52.649   2.939   3.585  -2.200  CBC   92M  17  
92M  CAQ   CAQ   C  0  1  Y  N  N  -1.122  17.380  48.897   3.035  -0.261   0.918  CAQ   92M  18  
92M  CAP   CAP   C  0  1  Y  N  N  -0.954  18.640  48.317   1.695   0.036   0.759  CAP   92M  19  
92M  CAO   CAO   C  0  1  Y  N  N  -0.757  19.748  49.128   1.310   1.085  -0.063  CAO   92M  20  
92M  NAN   NAN   N  0  1  N  N  N  -0.622  20.975  48.621  -0.051   1.387  -0.223  NAN   92M  21  
92M  C2    C2    C  0  1  Y  N  N   0.197  21.274  47.616  -0.997   0.376  -0.167  C2    92M  22  
92M  NBG   NBG   N  0  1  N  N  N   2.678  22.416  44.683  -3.778  -2.606  -0.055  NBG   92M  23  
92M  CBH   CBH   C  0  1  N  N  N   3.469  23.624  44.978  -3.724  -3.680   0.940  CBH   92M  24  
92M  CAB   CAB   C  0  1  N  N  N   2.832  21.859  43.487  -4.761  -2.567  -0.981  CAB   92M  25  
92M  OAA   OAA   O  0  1  N  N  N   3.615  22.374  42.677  -5.653  -3.390  -0.962  OAA   92M  26  
92M  CAC   CAC   C  0  1  N  N  N   2.074  20.629  43.108  -4.740  -1.494  -2.036  CAC   92M  27  
92M  CAD   CAD   C  0  1  N  N  N   2.603  19.457  43.937  -5.187  -0.158  -1.450  CAD   92M  28  
92M  NAE   NAE   N  0  1  N  N  N   2.055  19.514  45.292  -4.558   0.067  -0.146  NAE   92M  29  
92M  CAF   CAF   C  0  1  N  N  N   1.830  18.195  45.935  -4.772   1.447   0.311  CAF   92M  30  
92M  CAG   CAG   C  0  1  N  N  N   3.062  17.288  45.828  -4.143   1.658   1.704  CAG   92M  31  
92M  CAH   CAH   C  0  1  N  N  N   2.532  15.876  45.736  -5.099   2.579   2.483  CAH   92M  32  
92M  CAI   CAI   C  0  1  N  N  N   1.141  15.993  45.152  -6.274   2.896   1.535  CAI   92M  33  
92M  CAJ   CAJ   C  0  1  N  N  N   0.785  17.487  45.130  -6.281   1.717   0.530  CAJ   92M  34  
92M  H6    H6    H  0  1  N  N  N   1.464  23.969  46.183  -1.120  -2.904   0.035  H6    92M  35  
92M  HAT   HAT   H  0  1  N  N  N  -2.558  15.799  52.530   5.116  -1.851   0.877  HAT   92M  36  
92M  HATA  HATA  H  0  0  N  N  N  -0.976  16.493  52.868   5.022  -0.747   2.270  HATA  92M  37  
92M  HAU   HAU   H  0  1  N  N  N   0.050  14.214  52.107   7.442  -0.269   2.062  HAU   92M  38  
92M  HAUA  HAUA  H  0  0  N  N  N  -0.876  14.160  53.635   7.160  -2.016   2.262  HAUA  92M  39  
92M  HAV   HAV   H  0  1  N  N  N  -2.874  13.353  52.465   7.356  -2.347  -0.175  HAV   92M  40  
92M  HOAW  HOAW  H  0  0  N  N  N  -1.314  11.558  51.202   9.665  -1.744  -0.290  HOAW  92M  41  
92M  HAX   HAX   H  0  1  N  N  N  -1.935  12.722  49.837   7.925   0.653  -0.249  HAX   92M  42  
92M  HAXA  HAXA  H  0  0  N  N  N  -3.187  13.957  50.315   7.975  -0.459  -1.639  HAXA  92M  43  
92M  HAY   HAY   H  0  1  N  N  N  -0.197  14.389  49.902   5.819   0.775  -1.544  HAY   92M  44  
92M  HAYA  HAYA  H  0  0  N  N  N  -1.578  15.062  48.933   5.575  -0.974  -1.322  HAYA  92M  45  
92M  HAZ   HAZ   H  0  1  N  N  N  -0.968  18.225  52.177   4.365   2.115  -1.092  HAZ   92M  46  
92M  HBC   HBC   H  0  1  N  N  N  -0.669  19.403  52.857   2.503   4.373  -2.814  HBC   92M  47  
92M  HBCA  HBCA  H  0  0  N  N  N   0.228  20.934  53.135   3.598   4.029  -1.454  HBCA  92M  48  
92M  HBCB  HBCB  H  0  0  N  N  N  -1.566  20.948  53.041   3.511   2.906  -2.832  HBCB  92M  49  
92M  HAQ   HAQ   H  0  1  N  N  N  -1.250  16.517  48.260   3.334  -1.078   1.558  HAQ   92M  50  
92M  HAP   HAP   H  0  1  N  N  N  -0.977  18.751  47.243   0.948  -0.548   1.275  HAP   92M  51  
92M  HNAN  HNAN  H  0  0  N  N  N  -1.168  21.712  49.019  -0.330   2.304  -0.374  HNAN  92M  52  
92M  HBH   HBH   H  0  1  N  N  N   3.666  23.679  46.059  -4.289  -3.384   1.824  HBH   92M  53  
92M  HBHA  HBHA  H  0  0  N  N  N   4.424  23.579  44.433  -4.156  -4.587   0.519  HBHA  92M  54  
92M  HBHB  HBHB  H  0  0  N  N  N   2.908  24.516  44.662  -2.687  -3.866   1.218  HBHB  92M  55  
92M  HAC   HAC   H  0  1  N  N  N   1.003  20.775  43.310  -3.728  -1.394  -2.428  HAC   92M  56  
92M  HACA  HACA  H  0  0  N  N  N   2.206  20.421  42.036  -5.412  -1.774  -2.848  HACA  92M  57  
92M  HAD   HAD   H  0  1  N  N  N   2.302  18.511  43.463  -4.904   0.646  -2.130  HAD   92M  58  
92M  HADA  HADA  H  0  0  N  N  N   3.700  19.517  43.988  -6.271  -0.162  -1.331  HADA  92M  59  
92M  HAF   HAF   H  0  1  N  N  N   1.570  18.373  46.989  -4.355   2.154  -0.406  HAF   92M  60  
92M  HAG   HAG   H  0  1  N  N  N   3.653  17.540  44.935  -4.045   0.702   2.219  HAG   92M  61  
92M  HAGA  HAGA  H  0  0  N  N  N   3.728  17.411  46.695  -3.166   2.131   1.606  HAGA  92M  62  
92M  HAH   HAH   H  0  1  N  N  N   3.175  15.261  45.089  -5.465   2.070   3.374  HAH   92M  63  
92M  HAHA  HAHA  H  0  0  N  N  N   2.515  15.387  46.721  -4.586   3.500   2.762  HAHA  92M  64  
92M  HAI   HAI   H  0  1  N  N  N   1.120  15.581  44.132  -7.213   2.930   2.089  HAI   92M  65  
92M  HAIA  HAIA  H  0  0  N  N  N   0.415  15.427  45.755  -6.103   3.839   1.016  HAIA  92M  66  
92M  HAJ   HAJ   H  0  1  N  N  N  -0.211  17.649  45.569  -6.761   2.009  -0.404  HAJ   92M  67  
92M  HAJA  HAJA  H  0  0  N  N  N   0.758  17.869  44.099  -6.771   0.845   0.962  HAJA  92M  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
92M  C4   C5    DOUB  Y  N   1  
92M  C4   N3    SING  Y  N   2  
92M  C4   NAE   SING  N  N   3  
92M  C5   C6    SING  Y  N   4  
92M  C5   NBG   SING  N  N   5  
92M  C6   N1    DOUB  Y  N   6  
92M  N1   C2    SING  Y  N   7  
92M  N3   C2    DOUB  Y  N   8  
92M  CAT  CAU   SING  N  N   9  
92M  CAT  NAS   SING  N  N  10  
92M  CAU  CAV   SING  N  N  11  
92M  CAV  OAW   SING  N  N  12  
92M  CAV  CAX   SING  N  N  13  
92M  CAX  CAY   SING  N  N  14  
92M  CAY  NAS   SING  N  N  15  
92M  NAS  CAR   SING  N  N  16  
92M  CAR  CAZ   DOUB  Y  N  17  
92M  CAR  CAQ   SING  Y  N  18  
92M  CAZ  CBA   SING  Y  N  19  
92M  CBA  OBB   SING  N  N  20  
92M  CBA  CAO   DOUB  Y  N  21  
92M  OBB  CBC   SING  N  N  22  
92M  CAQ  CAP   DOUB  Y  N  23  
92M  CAP  CAO   SING  Y  N  24  
92M  CAO  NAN   SING  N  N  25  
92M  NAN  C2    SING  N  N  26  
92M  NBG  CBH   SING  N  N  27  
92M  NBG  CAB   SING  N  N  28  
92M  CAB  OAA   DOUB  N  N  29  
92M  CAB  CAC   SING  N  N  30  
92M  CAC  CAD   SING  N  N  31  
92M  CAD  NAE   SING  N  N  32  
92M  NAE  CAF   SING  N  N  33  
92M  CAF  CAG   SING  N  N  34  
92M  CAF  CAJ   SING  N  N  35  
92M  CAG  CAH   SING  N  N  36  
92M  CAH  CAI   SING  N  N  37  
92M  CAI  CAJ   SING  N  N  38  
92M  C6   H6    SING  N  N  39  
92M  CAT  HAT   SING  N  N  40  
92M  CAT  HATA  SING  N  N  41  
92M  CAU  HAU   SING  N  N  42  
92M  CAU  HAUA  SING  N  N  43  
92M  CAV  HAV   SING  N  N  44  
92M  OAW  HOAW  SING  N  N  45  
92M  CAX  HAX   SING  N  N  46  
92M  CAX  HAXA  SING  N  N  47  
92M  CAY  HAY   SING  N  N  48  
92M  CAY  HAYA  SING  N  N  49  
92M  CAZ  HAZ   SING  N  N  50  
92M  CBC  HBC   SING  N  N  51  
92M  CBC  HBCA  SING  N  N  52  
92M  CBC  HBCB  SING  N  N  53  
92M  CAQ  HAQ   SING  N  N  54  
92M  CAP  HAP   SING  N  N  55  
92M  NAN  HNAN  SING  N  N  56  
92M  CBH  HBH   SING  N  N  57  
92M  CBH  HBHA  SING  N  N  58  
92M  CBH  HBHB  SING  N  N  59  
92M  CAC  HAC   SING  N  N  60  
92M  CAC  HACA  SING  N  N  61  
92M  CAD  HAD   SING  N  N  62  
92M  CAD  HADA  SING  N  N  63  
92M  CAF  HAF   SING  N  N  64  
92M  CAG  HAG   SING  N  N  65  
92M  CAG  HAGA  SING  N  N  66  
92M  CAH  HAH   SING  N  N  67  
92M  CAH  HAHA  SING  N  N  68  
92M  CAI  HAI   SING  N  N  69  
92M  CAI  HAIA  SING  N  N  70  
92M  CAJ  HAJ   SING  N  N  71  
92M  CAJ  HAJA  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
92M  SMILES            ACDLabs               10.04  "O=C4N(c1c(nc(nc1)Nc3ccc(N2CCC(O)CC2)cc3OC)N(CC4)C5CCCC5)C"  
92M  SMILES_CANONICAL  CACTVS                3.341  "COc1cc(ccc1Nc2ncc3N(C)C(=O)CCN(C4CCCC4)c3n2)N5CCC(O)CC5"  
92M  SMILES            CACTVS                3.341  "COc1cc(ccc1Nc2ncc3N(C)C(=O)CCN(C4CCCC4)c3n2)N5CCC(O)CC5"  
92M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CN1c2cnc(nc2N(CCC1=O)C3CCCC3)Nc4ccc(cc4OC)N5CCC(CC5)O"  
92M  SMILES            "OpenEye OEToolkits"  1.5.0  "CN1c2cnc(nc2N(CCC1=O)C3CCCC3)Nc4ccc(cc4OC)N5CCC(CC5)O"  
92M  InChI             InChI                 1.03   "InChI=1S/C25H34N6O3/c1-29-21-16-26-25(28-24(21)31(14-11-23(29)33)17-5-3-4-6-17)27-20-8-7-18(15-22(20)34-2)30-12-9-19(32)10-13-30/h7-8,15-17,19,32H,3-6,9-14H2,1-2H3,(H,26,27,28)"  
92M  InChIKey          InChI                 1.03   KBILTEUAXWLXKP-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
92M  "SYSTEMATIC NAME"  ACDLabs               10.04  "9-cyclopentyl-2-{[4-(4-hydroxypiperidin-1-yl)-2-methoxyphenyl]amino}-5-methyl-5,7,8,9-tetrahydro-6H-pyrimido[4,5-b][1,4]diazepin-6-one"  
92M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "9-cyclopentyl-2-[[4-(4-hydroxypiperidin-1-yl)-2-methoxy-phenyl]amino]-5-methyl-7,8-dihydropyrimido[4,5-b][1,4]diazepin-6-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
92M  "Create component"      2009-05-05  RCSB  
92M  "Modify aromatic_flag"  2011-06-04  RCSB  
92M  "Modify descriptor"     2011-06-04  RCSB  
92M  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     92M
_pdbx_chem_comp_synonyms.name        "9-cyclopentyl-2-{[4-(4-hydroxypiperidin-1-yl)-2-methoxyphenyl]amino}-5-methyl-5,7,8,9-tetrahydro-6H-pyrimido[4,5-b][1,4]diazepin-6-one"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
