data_79M
#

_chem_comp.id                                   79M
_chem_comp.name                                 "(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H36 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-06-05
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       328.487
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    79M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4BRR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
79M  C19   C19   C  0  1  N  N  N  -25.980  -12.708   4.697   11.230  -3.073  -0.307  C19   79M   1  
79M  C8    C8    C  0  1  N  N  N  -25.049  -10.724  12.315    3.357   3.020   0.317  C8    79M   2  
79M  C7    C7    C  0  1  N  N  N  -25.343   -9.682  13.061    2.246   3.184  -0.357  C7    79M   3  
79M  C15   C15   C  0  1  N  N  N  -25.139  -12.188   5.838    9.774  -2.955   0.146  C15   79M   4  
79M  C9    C9    C  0  1  N  N  N  -24.209  -10.710  11.082    3.863   1.631   0.610  C9    79M   5  
79M  C6    C6    C  0  1  N  N  N  -24.881   -8.279  12.834    1.385   1.993  -0.692  C6    79M   6  
79M  C21   C21   C  0  1  N  N  N  -31.474   -9.278  14.447   -6.910  -0.301   0.364  C21   79M   7  
79M  C14   C14   C  0  1  N  N  N  -24.016  -13.132   6.202    9.260  -1.545  -0.152  C14   79M   8  
79M  C10   C10   C  0  1  N  N  N  -23.165  -11.815  11.032    5.320   1.513   0.158  C10   79M   9  
79M  C5    C5    C  0  1  N  N  N  -25.991   -7.250  12.975   -0.044   2.244  -0.209  C5    79M  10  
79M  C13   C13   C  0  1  N  N  N  -23.025  -12.583   7.219    7.803  -1.426   0.301  C13   79M  11  
79M  C11   C11   C  0  1  N  N  N  -22.570  -12.000   9.647    5.833   0.102   0.456  C11   79M  12  
79M  C4    C4    C  0  1  N  N  N  -26.899   -7.502  14.159   -0.918   1.035  -0.549  C4    79M  13  
79M  C12   C12   C  0  1  N  N  N  -23.600  -12.368   8.597    7.290  -0.016   0.003  C12   79M  14  
79M  C3    C3    C  0  1  N  N  N  -27.827   -6.357  14.475   -2.347   1.286  -0.065  C3    79M  15  
79M  C2    C2    C  0  1  N  N  N  -28.957   -6.748  15.416   -3.221   0.077  -0.405  C2    79M  16  
79M  C24   C24   C  0  1  N  N  N  -33.815   -9.967  15.052   -9.218  -1.204   0.677  C24   79M  17  
79M  C22   C22   C  0  1  N  N  R  -32.580   -9.205  15.472   -7.845  -1.472   0.057  C22   79M  18  
79M  O19   O19   O  0  1  N  N  N  -30.839   -6.728  13.935   -4.905   1.362   0.626  O19   79M  19  
79M  C1    C1    C  0  1  N  N  N  -30.141   -7.329  14.702   -4.629   0.324   0.071  C1    79M  20  
79M  O20   O20   O  0  1  N  N  N  -30.336   -8.608  15.036   -5.576  -0.607  -0.121  O20   79M  21  
79M  O23   O23   O  0  1  N  N  N  -32.099   -9.711  16.720   -7.981  -1.616  -1.358  O23   79M  22  
79M  O25   O25   O  0  1  N  N  N  -34.372   -9.419  13.865  -10.056  -2.347   0.491  O25   79M  23  
79M  H21C  H21C  H  0  0  N  N  N  -29.283   -5.851  15.963   -3.224  -0.077  -1.484  H21C  79M  24  
79M  H22C  H22C  H  0  0  N  N  N  -28.577   -7.495  16.129   -2.821  -0.810   0.087  H22C  79M  25  
79M  H31C  H31C  H  0  0  N  N  N  -28.265   -5.991  13.535   -2.344   1.440   1.014  H31C  79M  26  
79M  H32C  H32C  H  0  0  N  N  N  -27.243   -5.552  14.945   -2.747   2.173  -0.557  H32C  79M  27  
79M  H41C  H41C  H  0  0  N  N  N  -26.271   -7.692  15.042   -0.921   0.881  -1.628  H41C  79M  28  
79M  H42C  H42C  H  0  0  N  N  N  -27.509   -8.392  13.944   -0.518   0.148  -0.057  H42C  79M  29  
79M  H51C  H51C  H  0  0  N  N  N  -26.600   -7.267  12.059   -0.041   2.398   0.871  H51C  79M  30  
79M  H52C  H52C  H  0  0  N  N  N  -25.533   -6.257  13.093   -0.444   3.131  -0.701  H52C  79M  31  
79M  H61C  H61C  H  0  0  N  N  N  -24.466   -8.208  11.818    1.382   1.839  -1.771  H61C  79M  32  
79M  H62C  H62C  H  0  0  N  N  N  -24.095   -8.047  13.568    1.785   1.106  -0.200  H62C  79M  33  
79M  H7    H7    H  0  1  N  N  N  -25.977   -9.856  13.918    1.946   4.172  -0.673  H7    79M  34  
79M  H8    H8    H  0  1  N  N  N  -25.452  -11.677  12.623    3.911   3.881   0.663  H8    79M  35  
79M  H91   H91   H  0  1  N  N  N  -24.872  -10.820  10.211    3.799   1.440   1.681  H91   79M  36  
79M  H92   H92   H  0  1  N  N  N  -23.690   -9.741  11.028    3.255   0.902   0.074  H92   79M  37  
79M  H101  H101  H  0  0  N  N  N  -22.354  -11.565  11.732    5.384   1.704  -0.913  H101  79M  38  
79M  H102  H102  H  0  0  N  N  N  -23.638  -12.759  11.341    5.927   2.241   0.694  H102  79M  39  
79M  H111  H111  H  0  0  N  N  N  -22.086  -11.059   9.346    5.769  -0.089   1.527  H111  79M  40  
79M  H112  H112  H  0  0  N  N  N  -21.818  -12.801   9.694    5.226  -0.626  -0.081  H112  79M  41  
79M  H121  H121  H  0  0  N  N  N  -24.098  -13.297   8.912    7.897   0.713   0.539  H121  79M  42  
79M  H122  H122  H  0  0  N  N  N  -24.340  -11.556   8.540    7.354   0.176  -1.068  H122  79M  43  
79M  H131  H131  H  0  0  N  N  N  -22.651  -11.617   6.848    7.196  -2.155  -0.236  H131  79M  44  
79M  H132  H132  H  0  0  N  N  N  -22.189  -13.293   7.302    7.739  -1.618   1.372  H132  79M  45  
79M  H141  H141  H  0  0  N  N  N  -23.463  -13.377   5.283    9.868  -0.816   0.385  H141  79M  46  
79M  H142  H142  H  0  0  N  N  N  -24.460  -14.048   6.617    9.325  -1.353  -1.223  H142  79M  47  
79M  H151  H151  H  0  0  N  N  N  -25.784  -12.050   6.718    9.166  -3.684  -0.391  H151  79M  48  
79M  H152  H152  H  0  0  N  N  N  -24.706  -11.220   5.545    9.709  -3.146   1.217  H152  79M  49  
79M  H191  H191  H  0  0  N  N  N  -26.780  -11.987   4.472   11.295  -2.882  -1.378  H191  79M  50  
79M  H192  H192  H  0  0  N  N  N  -25.347  -12.843   3.807   11.838  -2.344   0.230  H192  79M  51  
79M  H193  H193  H  0  0  N  N  N  -26.425  -13.673   4.980   11.596  -4.078  -0.094  H193  79M  52  
79M  H211  H211  H  0  0  N  N  N  -31.778   -8.770  13.520   -7.279   0.598  -0.131  H211  79M  53  
79M  H212  H212  H  0  0  N  N  N  -31.227  -10.327  14.226   -6.876  -0.135   1.441  H212  79M  54  
79M  H22   H22   H  0  1  N  N  N  -32.859   -8.148  15.597   -7.430  -2.388   0.477  H22   79M  55  
79M  H23   H23   H  0  1  N  N  N  -32.792   -9.667  17.368   -8.346  -0.836  -1.799  H23   79M  56  
79M  H241  H241  H  0  0  N  N  N  -33.545  -11.018  14.871   -9.104  -1.007   1.743  H241  79M  57  
79M  H242  H242  H  0  0  N  N  N  -34.562   -9.914  15.858   -9.672  -0.339   0.194  H242  79M  58  
79M  H25   H25   H  0  1  N  N  N  -35.146   -9.913  13.620  -10.944  -2.247   0.860  H25   79M  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
79M  C1   C2    SING  N  N   1  
79M  C1   O19   DOUB  N  N   2  
79M  C1   O20   SING  N  N   3  
79M  C2   C3    SING  N  N   4  
79M  C3   C4    SING  N  N   5  
79M  C4   C5    SING  N  N   6  
79M  C5   C6    SING  N  N   7  
79M  C6   C7    SING  N  N   8  
79M  C7   C8    DOUB  N  Z   9  
79M  C8   C9    SING  N  N  10  
79M  C9   C10   SING  N  N  11  
79M  C10  C11   SING  N  N  12  
79M  C11  C12   SING  N  N  13  
79M  C12  C13   SING  N  N  14  
79M  C13  C14   SING  N  N  15  
79M  C14  C15   SING  N  N  16  
79M  C15  C19   SING  N  N  17  
79M  O20  C21   SING  N  N  18  
79M  C21  C22   SING  N  N  19  
79M  C22  O23   SING  N  N  20  
79M  C22  C24   SING  N  N  21  
79M  C24  O25   SING  N  N  22  
79M  C2   H21C  SING  N  N  23  
79M  C2   H22C  SING  N  N  24  
79M  C3   H31C  SING  N  N  25  
79M  C3   H32C  SING  N  N  26  
79M  C4   H41C  SING  N  N  27  
79M  C4   H42C  SING  N  N  28  
79M  C5   H51C  SING  N  N  29  
79M  C5   H52C  SING  N  N  30  
79M  C6   H61C  SING  N  N  31  
79M  C6   H62C  SING  N  N  32  
79M  C7   H7    SING  N  N  33  
79M  C8   H8    SING  N  N  34  
79M  C9   H91   SING  N  N  35  
79M  C9   H92   SING  N  N  36  
79M  C10  H101  SING  N  N  37  
79M  C10  H102  SING  N  N  38  
79M  C11  H111  SING  N  N  39  
79M  C11  H112  SING  N  N  40  
79M  C12  H121  SING  N  N  41  
79M  C12  H122  SING  N  N  42  
79M  C13  H131  SING  N  N  43  
79M  C13  H132  SING  N  N  44  
79M  C14  H141  SING  N  N  45  
79M  C14  H142  SING  N  N  46  
79M  C15  H151  SING  N  N  47  
79M  C15  H152  SING  N  N  48  
79M  C19  H191  SING  N  N  49  
79M  C19  H192  SING  N  N  50  
79M  C19  H193  SING  N  N  51  
79M  C21  H211  SING  N  N  52  
79M  C21  H212  SING  N  N  53  
79M  C22  H22   SING  N  N  54  
79M  O23  H23   SING  N  N  55  
79M  C24  H241  SING  N  N  56  
79M  C24  H242  SING  N  N  57  
79M  O25  H25   SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
79M  SMILES            ACDLabs               12.01  "O=C(OCC(O)CO)CCCCC\C=C/CCCCCCCC"  
79M  InChI             InChI                 1.03   "InChI=1S/C19H36O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(22)23-17-18(21)16-20/h9-10,18,20-21H,2-8,11-17H2,1H3/b10-9-/t18-/m1/s1"  
79M  InChIKey          InChI                 1.03   OWGMAJRKMYGYBQ-HJCTWCACSA-N  
79M  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCC\C=C/CCCCCC(=O)OC[C@H](O)CO"  
79M  SMILES            CACTVS                3.385  "CCCCCCCCC=CCCCCCC(=O)OC[CH](O)CO"  
79M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCCCCCCC/C=C\CCCCCC(=O)OC[C@@H](CO)O"  
79M  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCCCCCCC=CCCCCCC(=O)OCC(CO)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
79M  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-2,3-dihydroxypropyl (7Z)-hexadec-7-enoate"  
79M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
79M  "Create component"    2013-06-05  EBI   
79M  "Other modification"  2013-06-12  EBI   
79M  "Initial release"     2014-06-18  RCSB  
79M  "Modify descriptor"   2014-09-05  RCSB  
79M  "Modify synonyms"     2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     79M
_pdbx_chem_comp_synonyms.name        "[(2R)-2,3-bis(oxidanyl)propyl] (Z)-hexadec-7-enoate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
