data_5LM
# 
_chem_comp.id                                    5LM 
_chem_comp.name                                  "5-[(E)-3-thiophen-2-ylprop-2-enylidene]-1,3-diazinane-2,4,6-trione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H8 N2 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        248.258 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5LM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EA9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5LM CAQ C1  C 0 1 Y N N N N N 25.145 19.247 -10.585 4.411  -1.172 -0.183 CAQ 5LM 1  
5LM CAP C2  C 0 1 Y N N N N N 24.105 19.933 -9.987  5.431  -0.263 -0.064 CAP 5LM 2  
5LM CAO C3  C 0 1 Y N N N N N 23.313 19.125 -9.216  5.046  1.004  0.148  CAO 5LM 3  
5LM SAN S1  S 0 1 Y N N N N N 23.875 17.509 -9.238  3.345  1.124  0.211  SAN 5LM 4  
5LM CAM C4  C 0 1 Y N N N N N 25.102 17.926 -10.259 3.164  -0.604 -0.061 CAM 5LM 5  
5LM CAL C5  C 0 1 N N N N N N 26.046 16.966 -10.727 1.940  -1.295 -0.140 CAL 5LM 6  
5LM CAK C6  C 0 1 N N N N N N 26.005 15.659 -10.502 0.751  -0.610 -0.000 CAK 5LM 7  
5LM CAJ C7  C 0 1 N N N N N N 27.224 15.057 -11.096 -0.459 -1.293 -0.078 CAJ 5LM 8  
5LM CAE C8  C 0 1 N N N N N N 27.269 14.186 -12.329 -1.664 -0.587 -0.047 CAE 5LM 9  
5LM CAF C9  C 0 1 N N N N N N 28.206 14.502 -13.354 -2.955 -1.278 0.088  CAF 5LM 10 
5LM OAG O1  O 0 1 N N N N N N 28.922 15.566 -13.362 -3.008 -2.490 0.177  OAG 5LM 11 
5LM NAA N1  N 0 1 N N N N N N 28.334 13.678 -14.398 -4.079 -0.532 0.111  NAA 5LM 12 
5LM CAB C10 C 0 1 N N N N N N 27.704 12.480 -14.438 -4.034 0.804  0.013  CAB 5LM 13 
5LM OAH O2  O 0 1 N N N N N N 28.004 11.710 -15.347 -5.082 1.419  0.040  OAH 5LM 14 
5LM NAC N2  N 0 1 N N N N N N 26.795 12.095 -13.509 -2.894 1.497  -0.112 NAC 5LM 15 
5LM CAD C11 C 0 1 N N N N N N 26.551 12.887 -12.460 -1.694 0.881  -0.142 CAD 5LM 16 
5LM OAI O3  O 0 1 N N N N N N 25.631 12.521 -11.592 -0.665 1.521  -0.256 OAI 5LM 17 
5LM H1  H1  H 0 1 N N N N N N 25.890 19.697 -11.224 4.570  -2.225 -0.359 H1  5LM 18 
5LM H2  H2  H 0 1 N N N N N N 23.935 20.992 -10.114 6.471  -0.548 -0.135 H2  5LM 19 
5LM H3  H3  H 0 1 N N N N N N 22.447 19.463 -8.666  5.722  1.837  0.265  H3  5LM 20 
5LM H4  H4  H 0 1 N N N N N N 26.870 17.336 -11.319 1.932  -2.362 -0.309 H4  5LM 21 
5LM H6  H6  H 0 1 N N N N N N 25.223 15.128 -9.979  0.759  0.456  0.169  H6  5LM 22 
5LM H8  H8  H 0 1 N N N N N N 28.163 15.260 -10.603 -0.467 -2.370 -0.163 H8  5LM 23 
5LM H11 H11 H 0 1 N N N N N N 28.909 13.953 -15.169 -4.938 -0.973 0.199  H11 5LM 24 
5LM H12 H12 H 0 1 N N N N N N 26.311 11.226 -13.608 -2.931 2.464  -0.177 H12 5LM 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5LM OAH CAB DOUB N N 1  
5LM CAB NAA SING N N 2  
5LM CAB NAC SING N N 3  
5LM NAA CAF SING N N 4  
5LM NAC CAD SING N N 5  
5LM OAG CAF DOUB N N 6  
5LM CAF CAE SING N N 7  
5LM CAD CAE SING N N 8  
5LM CAD OAI DOUB N N 9  
5LM CAE CAJ DOUB N N 10 
5LM CAJ CAK SING N N 11 
5LM CAL CAK DOUB N E 12 
5LM CAL CAM SING N N 13 
5LM CAQ CAM DOUB Y N 14 
5LM CAQ CAP SING Y N 15 
5LM CAM SAN SING Y N 16 
5LM CAP CAO DOUB Y N 17 
5LM SAN CAO SING Y N 18 
5LM CAQ H1  SING N N 19 
5LM CAP H2  SING N N 20 
5LM CAO H3  SING N N 21 
5LM CAL H4  SING N N 22 
5LM CAK H6  SING N N 23 
5LM CAJ H8  SING N N 24 
5LM NAA H11 SING N N 25 
5LM NAC H12 SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5LM InChI            InChI                1.03  "InChI=1S/C11H8N2O3S/c14-9-8(10(15)13-11(16)12-9)5-1-3-7-4-2-6-17-7/h1-6H,(H2,12,13,14,15,16)/b3-1+" 
5LM InChIKey         InChI                1.03  XVDGTYMDHFXORY-HNQUOIGGSA-N                                                                          
5LM SMILES_CANONICAL CACTVS               3.385 "O=C1NC(=O)C(=C/C=C/c2sccc2)C(=O)N1"                                                                 
5LM SMILES           CACTVS               3.385 "O=C1NC(=O)C(=CC=Cc2sccc2)C(=O)N1"                                                                   
5LM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1cc(sc1)/C=C/C=C2C(=O)NC(=O)NC2=O"                                                                 
5LM SMILES           "OpenEye OEToolkits" 2.0.4 "c1cc(sc1)C=CC=C2C(=O)NC(=O)NC2=O"                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           5LM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "5-[(~{E})-3-thiophen-2-ylprop-2-enylidene]-1,3-diazinane-2,4,6-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5LM "Create component" 2015-10-20 RCSB 
5LM "Initial release"  2016-10-19 RCSB 
5LM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5LM 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAJ 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
