data_5KM
#

_chem_comp.id                                   5KM
_chem_comp.name                                 "2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H17 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-13
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       331.320
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5KM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7P11
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5KM  C1   C1   C  0  1  N  N  R  14.391  -6.165   9.674   5.480   0.334   0.472  C1   5KM   1  
5KM  C2   C2   C  0  1  N  N  R  13.302  -5.371   8.968   4.086  -0.283   0.655  C2   5KM   2  
5KM  C3   C3   C  0  1  N  N  R  11.959  -5.763   9.573   3.048   0.724   0.147  C3   5KM   3  
5KM  C4   C4   C  0  1  N  N  N   9.637  -5.329   9.355   0.662   0.941   0.217  C4   5KM   4  
5KM  C5   C5   C  0  1  Y  N  N   8.636  -4.765   8.381  -0.615   0.157   0.055  C5   5KM   5  
5KM  C6   C6   C  0  1  Y  N  N   7.274  -3.032   7.686  -2.923   0.117   0.068  C6   5KM   6  
5KM  C7   C7   C  0  1  Y  N  N   6.798  -3.815   6.477  -2.923  -1.266  -0.239  C7   5KM   7  
5KM  O4   O1   O  0  1  N  N  N   6.365   0.801   7.799  -7.779   0.100   0.107  O4   5KM   8  
5KM  C11  C8   C  0  1  N  N  N   5.484   0.072   7.345  -6.624   0.779   0.247  C11  5KM   9  
5KM  O3   O2   O  0  1  N  N  N   4.225   0.477   7.185  -6.645   1.964   0.510  O3   5KM  10  
5KM  C10  C9   C  0  1  Y  N  N   5.899  -1.287   6.983  -5.332   0.081   0.081  C10  5KM  11  
5KM  C12  C10  C  0  1  Y  N  N   6.804  -1.773   7.895  -4.149   0.784   0.227  C12  5KM  12  
5KM  N    N1   N  0  1  Y  N  N   8.153  -3.525   8.587  -1.764   0.770   0.202  N    5KM  13  
5KM  C9   C11  C  0  1  Y  N  N   5.433  -1.974   5.852  -5.316  -1.292  -0.225  C9   5KM  14  
5KM  C8   C12  C  0  1  Y  N  N   5.879  -3.277   5.572  -4.141  -1.954  -0.381  C8   5KM  15  
5KM  C13  C13  C  0  1  Y  N  N   7.341  -5.067   6.320  -1.691  -1.926  -0.408  C13  5KM  16  
5KM  C14  C14  C  0  1  Y  N  N   8.264  -5.512   7.270  -0.544  -1.201  -0.252  C14  5KM  17  
5KM  O2   O3   O  0  1  N  N  N  10.957  -4.966   8.945   1.781   0.075   0.015  O2   5KM  18  
5KM  O1   O4   O  0  1  N  N  N  13.510  -3.937   8.966   3.992  -1.494  -0.098  O1   5KM  19  
5KM  C15  C15  C  0  1  N  N  N  11.998  -5.614  11.086   3.480   1.257  -1.191  C15  5KM  20  
5KM  C16  C16  C  0  1  N  N  N  13.138  -5.713  11.763   4.708   1.151  -1.627  C16  5KM  21  
5KM  O5   O5   O  0  1  N  N  N  14.395  -5.916  11.076   5.694   0.549  -0.926  O5   5KM  22  
5KM  C    C17  C  0  1  N  N  N  15.755  -5.807   9.144   6.543  -0.621   1.016  C    5KM  23  
5KM  O    O6   O  0  1  N  N  N  16.622  -6.831   9.560   7.829  -0.004   0.925  O    5KM  24  
5KM  H1   H1   H  0  1  N  N  N  14.214  -7.235   9.489   5.533   1.285   1.003  H1   5KM  25  
5KM  H2   H2   H  0  1  N  N  N  13.290  -5.709   7.921   3.911  -0.491   1.710  H2   5KM  26  
5KM  H3   H3   H  0  1  N  N  N  11.778  -6.823   9.340   2.963   1.547   0.856  H3   5KM  27  
5KM  H4   H4   H  0  1  N  N  N   9.440  -4.924  10.359   0.688   1.747  -0.516  H4   5KM  28  
5KM  H5   H5   H  0  1  N  N  N   9.549  -6.425   9.378   0.705   1.362   1.222  H5   5KM  29  
5KM  H6   H6   H  0  1  N  N  N   5.998   1.654   8.001  -8.599   0.599   0.225  H6   5KM  30  
5KM  H7   H7   H  0  1  N  N  N   7.127  -1.182   8.739  -4.168   1.839   0.461  H7   5KM  31  
5KM  H8   H8   H  0  1  N  N  N   4.725  -1.497   5.190  -6.248  -1.825  -0.336  H8   5KM  32  
5KM  H9   H9   H  0  1  N  N  N   5.533  -3.829   4.710  -4.142  -3.008  -0.617  H9   5KM  33  
5KM  H10  H10  H  0  1  N  N  N   7.062  -5.691   5.484  -1.653  -2.980  -0.642  H10  5KM  34  
5KM  H11  H11  H  0  1  N  N  N   8.711  -6.486   7.134   0.418  -1.679  -0.367  H11  5KM  35  
5KM  H12  H12  H  0  1  N  N  N  14.356  -3.740   8.582   3.129  -1.926  -0.043  H12  5KM  36  
5KM  H13  H13  H  0  1  N  N  N  11.080  -5.424  11.622   2.748   1.746  -1.817  H13  5KM  37  
5KM  H14  H14  H  0  1  N  N  N  13.126  -5.641  12.841   4.946   1.564  -2.595  H14  5KM  38  
5KM  H15  H15  H  0  1  N  N  N  16.082  -4.841   9.556   6.325  -0.852   2.059  H15  5KM  39  
5KM  H16  H16  H  0  1  N  N  N  15.734  -5.749   8.046   6.539  -1.541   0.432  H16  5KM  40  
5KM  H17  H17  H  0  1  N  N  N  17.501  -6.649   9.248   8.554  -0.554   1.253  H17  5KM  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5KM  C8   C9   DOUB  Y  N   1  
5KM  C8   C7   SING  Y  N   2  
5KM  C9   C10  SING  Y  N   3  
5KM  C13  C7   DOUB  Y  N   4  
5KM  C13  C14  SING  Y  N   5  
5KM  C7   C6   SING  Y  N   6  
5KM  C10  C11  SING  N  N   7  
5KM  C10  C12  DOUB  Y  N   8  
5KM  O3   C11  DOUB  N  N   9  
5KM  C14  C5   DOUB  Y  N  10  
5KM  C11  O4   SING  N  N  11  
5KM  C6   C12  SING  Y  N  12  
5KM  C6   N    DOUB  Y  N  13  
5KM  C5   N    SING  Y  N  14  
5KM  C5   C4   SING  N  N  15  
5KM  O2   C4   SING  N  N  16  
5KM  O2   C3   SING  N  N  17  
5KM  O1   C2   SING  N  N  18  
5KM  C2   C3   SING  N  N  19  
5KM  C2   C1   SING  N  N  20  
5KM  C    O    SING  N  N  21  
5KM  C    C1   SING  N  N  22  
5KM  C3   C15  SING  N  N  23  
5KM  C1   O5   SING  N  N  24  
5KM  O5   C16  SING  N  N  25  
5KM  C15  C16  DOUB  N  N  26  
5KM  C1   H1   SING  N  N  27  
5KM  C2   H2   SING  N  N  28  
5KM  C3   H3   SING  N  N  29  
5KM  C4   H4   SING  N  N  30  
5KM  C4   H5   SING  N  N  31  
5KM  O4   H6   SING  N  N  32  
5KM  C12  H7   SING  N  N  33  
5KM  C9   H8   SING  N  N  34  
5KM  C8   H9   SING  N  N  35  
5KM  C13  H10  SING  N  N  36  
5KM  C14  H11  SING  N  N  37  
5KM  O1   H12  SING  N  N  38  
5KM  C15  H13  SING  N  N  39  
5KM  C16  H14  SING  N  N  40  
5KM  C    H15  SING  N  N  41  
5KM  C    H16  SING  N  N  42  
5KM  O    H17  SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5KM  InChI             InChI                 1.03   "InChI=1S/C17H17NO6/c19-8-15-16(20)14(5-6-23-15)24-9-12-4-3-10-1-2-11(17(21)22)7-13(10)18-12/h1-7,14-16,19-20H,8-9H2,(H,21,22)/t14-,15-,16-/m1/s1"  
5KM  InChIKey          InChI                 1.03   ZGVBVJVFIXTFPT-BZUAXINKSA-N  
5KM  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1OC=C[C@@H](OCc2ccc3ccc(cc3n2)C(O)=O)[C@H]1O"  
5KM  SMILES            CACTVS                3.385  "OC[CH]1OC=C[CH](OCc2ccc3ccc(cc3n2)C(O)=O)[CH]1O"  
5KM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(cc2c1ccc(n2)CO[C@@H]3C=CO[C@@H]([C@@H]3O)CO)C(=O)O"  
5KM  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(cc2c1ccc(n2)COC3C=COC(C3O)CO)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          5KM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]quinoline-7-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5KM  "Create component"  2021-07-13  PDBE  
5KM  "Initial release"   2021-12-15  RCSB  
##
