data_4EM
# 
_chem_comp.id                                    4EM 
_chem_comp.name                                  "(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(1H-pyrrol-2-ylcarbonyl)amino]ethyl}amino)propyl]amino}butyl dihydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H27 N4 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-07-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        434.381 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4EM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2N5I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4EM P24  P24  P 0 1 N N N N N N 3.946  -13.153 7.524  5.705   -2.580 -0.139 P24  4EM 1  
4EM O25  O25  O 0 1 N N N N N N 4.116  -14.485 6.891  4.447   -2.948 -0.826 O25  4EM 2  
4EM O26  O26  O 0 1 N N N N N N 5.058  -12.722 8.408  6.899   -2.492 -1.216 O26  4EM 3  
4EM O27  O27  O 0 1 N N N N N N 2.544  -13.077 8.285  5.525   -1.152 0.581  O27  4EM 4  
4EM C28  C28  C 0 1 N N N N N N 2.308  -12.175 9.373  5.104   0.023  -0.115 C28  4EM 5  
4EM C29  C29  C 0 1 N N N N N N 0.804  -12.137 9.667  5.038   1.199  0.863  C29  4EM 6  
4EM C30  C30  C 0 1 N N N N N N 0.044  -11.544 8.471  4.038   0.880  1.976  C30  4EM 7  
4EM C31  C31  C 0 1 N N N N N N 0.553  -11.235 10.884 6.422   1.434  1.472  C31  4EM 8  
4EM C32  C32  C 0 1 N N R N N N 0.315  -13.564 9.958  4.588   2.457  0.118  C32  4EM 9  
4EM O33  O33  O 0 1 N N N N N N 0.923  -14.085 11.155 5.585   2.829  -0.835 O33  4EM 10 
4EM C34  C34  C 0 1 N N N N N N -1.201 -13.588 10.134 3.290   2.180  -0.596 C34  4EM 11 
4EM O35  O35  O 0 1 N N N N N N -1.919 -13.788 9.146  3.261   2.139  -1.808 O35  4EM 12 
4EM N36  N36  N 0 1 N N N N N N -1.721 -13.429 11.360 2.161   1.978  0.112  N36  4EM 13 
4EM C37  C37  C 0 1 N N N N N N -3.171 -13.394 11.561 0.920   1.613  -0.577 C37  4EM 14 
4EM C38  C38  C 0 1 N N N N N N -3.579 -11.927 11.655 -0.202  1.444  0.450  C38  4EM 15 
4EM C39  C39  C 0 1 N N N N N N -5.054 -11.701 11.438 -1.478  1.069  -0.258 C39  4EM 16 
4EM O40  O40  O 0 1 N N N N N N -5.872 -11.544 12.351 -1.490  0.949  -1.465 O40  4EM 17 
4EM N41  N41  N 0 1 N N N N N N -5.321 -11.701 10.126 -2.607  0.867  0.450  N41  4EM 18 
4EM C42  C42  C 0 1 N N N N N N -6.583 -11.490 9.442  -3.848  0.502  -0.238 C42  4EM 19 
4EM C43  C43  C 0 1 N N N N N N -6.508 -12.095 8.037  -4.970  0.333  0.789  C43  4EM 20 
4EM N44  N44  N 0 1 N N N N N N -5.429 -11.604 7.414  -6.210  -0.032 0.100  N44  4EM 21 
4EM C45  C45  C 0 1 N N N N N N -5.181 -10.309 7.183  -7.339  -0.234 0.808  C45  4EM 22 
4EM O46  O46  O 0 1 N N N N N N -5.934 -9.380  7.469  -7.328  -0.113 2.019  O46  4EM 23 
4EM C47  C47  C 0 1 Y N N N N N -4.027 -10.097 6.569  -8.582  -0.599 0.119  C47  4EM 24 
4EM C49  C49  C 0 1 Y N N N N N -3.219 -9.068  6.808  -9.804  -0.835 0.713  C49  4EM 25 
4EM C51  C51  C 0 1 Y N N N N N -2.070 -9.329  6.186  -10.703 -1.149 -0.310 C51  4EM 26 
4EM C50  C50  C 0 1 Y N N N N N -2.191 -10.491 5.554  -10.030 -1.101 -1.485 C50  4EM 27 
4EM N48  N48  N 0 1 Y N N N N N -3.403 -10.975 5.795  -8.741  -0.763 -1.238 N48  4EM 28 
4EM H26  H26  H 0 1 N N N N N N 5.727  -13.396 8.427  7.755   -2.254 -0.835 H26  4EM 29 
4EM H281 H282 H 0 0 N N N N N N 2.850  -12.522 10.265 5.817   0.250  -0.908 H281 4EM 30 
4EM H283 H283 H 0 0 N N N N N N 2.657  -11.168 9.100  4.119   -0.145 -0.549 H283 4EM 31 
4EM H303 H303 H 0 0 N N N N N N -1.033 -11.522 8.694  4.416   0.053  2.578  H303 4EM 32 
4EM H301 H301 H 0 0 N N N N N N 0.400  -10.520 8.282  3.906   1.758  2.608  H301 4EM 33 
4EM H302 H302 H 0 0 N N N N N N 0.221  -12.164 7.580  3.081   0.602  1.536  H302 4EM 34 
4EM H312 H312 H 0 0 N N N N N N 1.088  -11.638 11.757 7.116   1.741  0.689  H312 4EM 35 
4EM H313 H313 H 0 0 N N N N N N 0.917  -10.219 10.669 6.357   2.217  2.227  H313 4EM 36 
4EM H311 H311 H 0 0 N N N N N N -0.525 -11.201 11.099 6.778   0.513  1.933  H311 4EM 37 
4EM H32  H32  H 0 1 N N N N N N 0.577  -14.202 9.101  4.444   3.269  0.830  H32  4EM 38 
4EM H33  H33  H 0 1 N N N N N N 0.606  -14.966 11.314 5.765   2.152  -1.501 H33  4EM 39 
4EM H36  H36  H 0 1 N N N N N N -1.111 -13.333 12.147 2.170   2.074  1.077  H36  4EM 40 
4EM H373 H373 H 0 0 N N N N N N -3.681 -13.873 10.712 0.651   2.400  -1.282 H373 4EM 41 
4EM H372 H372 H 0 0 N N N N N N -3.435 -13.919 12.491 1.065   0.677  -1.114 H372 4EM 42 
4EM H382 H382 H 0 0 N N N N N N -3.024 -11.361 10.893 0.067   0.658  1.156  H382 4EM 43 
4EM H383 H383 H 0 0 N N N N N N -3.312 -11.554 12.655 -0.347  2.381  0.988  H383 4EM 44 
4EM H41  H41  H 0 1 N N N N N N -4.536 -11.871 9.531  -2.598  0.963  1.415  H41  4EM 45 
4EM H423 H423 H 0 0 N N N N N N -6.784 -10.411 9.367  -4.117  1.288  -0.944 H423 4EM 46 
4EM H422 H422 H 0 0 N N N N N N -7.392 -11.975 10.008 -3.703  -0.435 -0.776 H422 4EM 47 
4EM H433 H433 H 0 0 N N N N N N -7.414 -11.831 7.472  -4.701  -0.453 1.494  H433 4EM 48 
4EM H432 H432 H 0 0 N N N N N N -6.427 -13.190 8.109  -5.114  1.270  1.326  H432 4EM 49 
4EM H44  H44  H 0 1 N N N N N N -4.749 -12.263 7.093  -6.220  -0.128 -0.865 H44  4EM 50 
4EM H49  H49  H 0 1 N N N N N N -3.450 -8.190  7.393  -10.024 -0.786 1.769  H49  4EM 51 
4EM H51  H51  H 0 1 N N N N N N -1.190 -8.703  6.194  -11.749 -1.388 -0.186 H51  4EM 52 
4EM H50  H50  H 0 1 N N N N N N -1.432 -10.962 4.947  -10.453 -1.295 -2.460 H50  4EM 53 
4EM H48  H48  H 0 1 N N N N N N -3.776 -11.839 5.457  -8.046  -0.660 -1.906 H48  4EM 54 
4EM O24  O24  O 0 1 N Y N N N N ?      ?       ?      6.060   -3.697 0.965  O24  4EM 55 
4EM H24  H24  H 0 1 N Y N N N N ?      ?       ?      6.182   -4.585 0.601  H24  4EM 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4EM C50 N48  SING Y N 1  
4EM C50 C51  DOUB Y N 2  
4EM N48 C47  SING Y N 3  
4EM C51 C49  SING Y N 4  
4EM C47 C49  DOUB Y N 5  
4EM C47 C45  SING N N 6  
4EM O25 P24  DOUB N N 7  
4EM C45 N44  SING N N 8  
4EM C45 O46  DOUB N N 9  
4EM N44 C43  SING N N 10 
4EM P24 O27  SING N N 11 
4EM P24 O26  SING N N 12 
4EM C43 C42  SING N N 13 
4EM O27 C28  SING N N 14 
4EM C30 C29  SING N N 15 
4EM O35 C34  DOUB N N 16 
4EM C28 C29  SING N N 17 
4EM C42 N41  SING N N 18 
4EM C29 C32  SING N N 19 
4EM C29 C31  SING N N 20 
4EM C32 C34  SING N N 21 
4EM C32 O33  SING N N 22 
4EM N41 C39  SING N N 23 
4EM C34 N36  SING N N 24 
4EM N36 C37  SING N N 25 
4EM C39 C38  SING N N 26 
4EM C39 O40  DOUB N N 27 
4EM C37 C38  SING N N 28 
4EM O26 H26  SING N N 29 
4EM C28 H281 SING N N 30 
4EM C28 H283 SING N N 31 
4EM C30 H303 SING N N 32 
4EM C30 H301 SING N N 33 
4EM C30 H302 SING N N 34 
4EM C31 H312 SING N N 35 
4EM C31 H313 SING N N 36 
4EM C31 H311 SING N N 37 
4EM C32 H32  SING N N 38 
4EM O33 H33  SING N N 39 
4EM N36 H36  SING N N 40 
4EM C37 H373 SING N N 41 
4EM C37 H372 SING N N 42 
4EM C38 H382 SING N N 43 
4EM C38 H383 SING N N 44 
4EM N41 H41  SING N N 45 
4EM C42 H423 SING N N 46 
4EM C42 H422 SING N N 47 
4EM C43 H433 SING N N 48 
4EM C43 H432 SING N N 49 
4EM N44 H44  SING N N 50 
4EM C49 H49  SING N N 51 
4EM C51 H51  SING N N 52 
4EM C50 H50  SING N N 53 
4EM N48 H48  SING N N 54 
4EM P24 O24  SING N N 55 
4EM O24 H24  SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4EM SMILES           ACDLabs              12.01 "P(OCC(C(C(NCCC(=O)NCCNC(=O)c1cccn1)=O)O)(C)C)(O)(O)=O"                                                                                                                                      
4EM InChI            InChI                1.03  "InChI=1S/C16H27N4O8P/c1-16(2,10-28-29(25,26)27)13(22)15(24)19-7-5-12(21)18-8-9-20-14(23)11-4-3-6-17-11/h3-4,6,13,17,22H,5,7-10H2,1-2H3,(H,18,21)(H,19,24)(H,20,23)(H2,25,26,27)/t13-/m0/s1" 
4EM InChIKey         InChI                1.03  ZAIDVOYGNFDUKJ-ZDUSSCGKSA-N                                                                                                                                                                  
4EM SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCNC(=O)c1[nH]ccc1"                                                                                                                              
4EM SMILES           CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCNC(=O)c1[nH]ccc1"                                                                                                                                
4EM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCNC(=O)c1ccc[nH]1)O"                                                                                                                                 
4EM SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCNC(=O)c1ccc[nH]1)O"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4EM "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(1H-pyrrol-2-ylcarbonyl)amino]ethyl}amino)propyl]amino}butyl dihydrogen phosphate"                    
4EM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-(1H-pyrrol-2-ylcarbonylamino)ethylamino]propyl]amino]butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4EM "Create component" 2015-07-21 RCSB 
4EM "Initial release"  2015-09-16 RCSB 
4EM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4EM 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P24 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
