data_41M
#

_chem_comp.id                                   41M
_chem_comp.name                                 "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysinamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H29 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        N-epsilon-Biotinyl-lysine-amid
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-01-13
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       371.498
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    41M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4S1D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
41M  N1   N1   N  0  1  N  N  N   6.125  -28.683   9.245  -6.213   1.259   0.676  N1   41M   1  
41M  C2   C2   C  0  1  N  N  N   4.927  -29.371   9.234  -7.138   1.620  -0.225  C2   41M   2  
41M  N3   N3   N  0  1  N  N  N   4.527  -29.643  10.523  -7.972   0.630  -0.572  N3   41M   3  
41M  C4   C4   C  0  1  N  N  S   6.576  -28.454  10.629  -6.404  -0.159   1.018  C4   41M   4  
41M  C5   C5   C  0  1  N  N  R   5.500  -29.127  11.489  -7.604  -0.588   0.166  C5   41M   5  
41M  C6   C6   C  0  1  N  N  N   6.070  -30.355  12.189  -7.244  -1.701  -0.839  C6   41M   6  
41M  S7   S7   S  0  1  N  N  N   7.564  -30.814  11.278  -5.434  -1.466  -1.069  S7   41M   7  
41M  C8   C8   C  0  1  N  N  S   7.928  -29.089  10.930  -5.127  -0.944   0.660  C8   41M   8  
41M  C9   C9   C  0  1  N  N  N   8.956  -28.949   9.812  -3.895  -0.039   0.737  C9   41M   9  
41M  C10  C10  C  0  1  N  N  N  10.259  -28.467  10.459  -2.634  -0.873   0.499  C10  41M  10  
41M  C11  C11  C  0  1  N  N  N  11.465  -28.668   9.546  -1.403   0.032   0.576  C11  41M  11  
41M  C12  C12  C  0  1  N  N  N  12.659  -29.239  10.318  -0.142  -0.802   0.339  C12  41M  12  
41M  C13  C13  C  0  1  N  N  N  13.150  -28.316  11.401   1.071   0.089   0.414  C13  41M  13  
41M  N14  N14  N  0  1  N  N  N  13.401  -28.896  12.627   2.302  -0.431   0.235  N14  41M  14  
41M  C15  C15  C  0  1  N  N  N  13.883  -28.091  13.769   3.481   0.435   0.309  C15  41M  15  
41M  C16  C16  C  0  1  N  N  N  13.960  -28.919  15.056   4.741  -0.398   0.071  C16  41M  16  
41M  C17  C17  C  0  1  N  N  N  12.557  -29.304  15.534   5.973   0.506   0.148  C17  41M  17  
41M  C18  C18  C  0  1  N  N  N  12.111  -28.403  16.692   7.234  -0.327  -0.090  C18  41M  18  
41M  C19  C19  C  0  1  N  N  S  12.107  -29.178  18.016   8.465   0.577  -0.013  C19  41M  19  
41M  C20  C20  C  0  1  N  N  N  13.203  -28.669  18.909   9.712  -0.262  -0.124  C20  41M  20  
41M  N21  N21  N  0  1  N  N  N  14.372  -29.396  18.931  10.176  -0.927   0.953  N21  41M  21  
41M  O22  O22  O  0  1  N  N  N   4.284  -29.705   8.227  -7.213   2.743  -0.685  O22  41M  22  
41M  O23  O23  O  0  1  N  N  N  13.332  -27.100  11.237   0.940   1.274   0.636  O23  41M  23  
41M  N24  N24  N  0  1  N  N  N  10.763  -29.065  18.694   8.429   1.549  -1.114  N24  41M  24  
41M  O25  O25  O  0  1  N  N  N  13.094  -27.645  19.593  10.299  -0.338  -1.183  O25  41M  25  
41M  H1   H1   H  0  1  N  N  N   6.617  -28.382   8.428  -5.526   1.839   1.040  H1   41M  26  
41M  H2   H2   H  0  1  N  N  N   3.687  -30.127  10.767  -8.700   0.705  -1.208  H2   41M  27  
41M  H3   H3   H  0  1  N  N  N   6.610  -27.377  10.852  -6.626  -0.264   2.080  H3   41M  28  
41M  H4   H4   H  0  1  N  N  N   5.053  -28.421  12.204  -8.428  -0.905   0.806  H4   41M  29  
41M  H5   H5   H  0  1  N  N  N   5.342  -31.179  12.165  -7.455  -2.684  -0.419  H5   41M  30  
41M  H6   H6   H  0  1  N  N  N   6.319  -30.116  13.233  -7.777  -1.560  -1.779  H6   41M  31  
41M  H7   H7   H  0  1  N  N  N   8.335  -28.663  11.859  -5.011  -1.811   1.310  H7   41M  32  
41M  H8   H8   H  0  1  N  N  N   8.609  -28.215   9.069  -3.966   0.737  -0.025  H8   41M  33  
41M  H9   H9   H  0  1  N  N  N   9.115  -29.920   9.321  -3.845   0.423   1.723  H9   41M  34  
41M  H10  H10  H  0  1  N  N  N  10.422  -29.030  11.390  -2.563  -1.649   1.261  H10  41M  35  
41M  H11  H11  H  0  1  N  N  N  10.164  -27.396  10.690  -2.685  -1.335  -0.486  H11  41M  36  
41M  H12  H12  H  0  1  N  N  N  11.750  -27.699   9.111  -1.474   0.808  -0.186  H12  41M  37  
41M  H13  H13  H  0  1  N  N  N  11.192  -29.366   8.741  -1.352   0.494   1.562  H13  41M  38  
41M  H14  H14  H  0  1  N  N  N  12.357  -30.191  10.778  -0.071  -1.578   1.101  H14  41M  39  
41M  H15  H15  H  0  1  N  N  N  13.482  -29.419   9.610  -0.192  -1.264  -0.647  H15  41M  40  
41M  H16  H16  H  0  1  N  N  N  13.254  -29.878  12.745   2.406  -1.379   0.058  H16  41M  41  
41M  H17  H17  H  0  1  N  N  N  14.885  -27.704  13.534   3.409   1.212  -0.453  H17  41M  42  
41M  H18  H18  H  0  1  N  N  N  13.193  -27.249  13.928   3.531   0.898   1.294  H18  41M  43  
41M  H19  H19  H  0  1  N  N  N  14.540  -29.834  14.863   4.813  -1.174   0.833  H19  41M  44  
41M  H20  H20  H  0  1  N  N  N  14.458  -28.327  15.838   4.691  -0.861  -0.915  H20  41M  45  
41M  H21  H21  H  0  1  N  N  N  11.849  -29.196  14.699   5.902   1.282  -0.614  H21  41M  46  
41M  H22  H22  H  0  1  N  N  N  12.566  -30.350  15.874   6.023   0.969   1.134  H22  41M  47  
41M  H23  H23  H  0  1  N  N  N  12.804  -27.552  16.774   7.305  -1.104   0.673  H23  41M  48  
41M  H24  H24  H  0  1  N  N  N  11.096  -28.031  16.489   7.183  -0.790  -1.075  H24  41M  49  
41M  H25  H25  H  0  1  N  N  N  12.299  -30.238  17.794   8.468   1.107   0.939  H25  41M  50  
41M  H26  H26  H  0  1  N  N  N  15.137  -29.096  19.502   9.706  -0.865   1.799  H26  41M  51  
41M  H27  H27  H  0  1  N  N  N  14.457  -30.224  18.376  10.978  -1.467   0.881  H27  41M  52  
41M  H28  H28  H  0  1  N  N  N  10.779  -29.575  19.554   9.197   2.199  -1.048  H28  41M  53  
41M  H29  H29  H  0  1  N  N  N  10.564  -28.103  18.881   8.426   1.082  -2.008  H29  41M  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
41M  O22  C2   DOUB  N  N   1  
41M  C2   N1   SING  N  N   2  
41M  C2   N3   SING  N  N   3  
41M  N1   C4   SING  N  N   4  
41M  C11  C12  SING  N  N   5  
41M  C11  C10  SING  N  N   6  
41M  C9   C10  SING  N  N   7  
41M  C9   C8   SING  N  N   8  
41M  C12  C13  SING  N  N   9  
41M  N3   C5   SING  N  N  10  
41M  C4   C8   SING  N  N  11  
41M  C4   C5   SING  N  N  12  
41M  C8   S7   SING  N  N  13  
41M  O23  C13  DOUB  N  N  14  
41M  S7   C6   SING  N  N  15  
41M  C13  N14  SING  N  N  16  
41M  C5   C6   SING  N  N  17  
41M  N14  C15  SING  N  N  18  
41M  C15  C16  SING  N  N  19  
41M  C16  C17  SING  N  N  20  
41M  C17  C18  SING  N  N  21  
41M  C18  C19  SING  N  N  22  
41M  C19  N24  SING  N  N  23  
41M  C19  C20  SING  N  N  24  
41M  C20  N21  SING  N  N  25  
41M  C20  O25  DOUB  N  N  26  
41M  N1   H1   SING  N  N  27  
41M  N3   H2   SING  N  N  28  
41M  C4   H3   SING  N  N  29  
41M  C5   H4   SING  N  N  30  
41M  C6   H5   SING  N  N  31  
41M  C6   H6   SING  N  N  32  
41M  C8   H7   SING  N  N  33  
41M  C9   H8   SING  N  N  34  
41M  C9   H9   SING  N  N  35  
41M  C10  H10  SING  N  N  36  
41M  C10  H11  SING  N  N  37  
41M  C11  H12  SING  N  N  38  
41M  C11  H13  SING  N  N  39  
41M  C12  H14  SING  N  N  40  
41M  C12  H15  SING  N  N  41  
41M  N14  H16  SING  N  N  42  
41M  C15  H17  SING  N  N  43  
41M  C15  H18  SING  N  N  44  
41M  C16  H19  SING  N  N  45  
41M  C16  H20  SING  N  N  46  
41M  C17  H21  SING  N  N  47  
41M  C17  H22  SING  N  N  48  
41M  C18  H23  SING  N  N  49  
41M  C18  H24  SING  N  N  50  
41M  C19  H25  SING  N  N  51  
41M  N21  H26  SING  N  N  52  
41M  N21  H27  SING  N  N  53  
41M  N24  H28  SING  N  N  54  
41M  N24  H29  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
41M  SMILES            ACDLabs               12.01  "O=C1NC2C(SCC2N1)CCCCC(=O)NCCCCC(C(=O)N)N"  
41M  InChI             InChI                 1.03   "InChI=1S/C16H29N5O3S/c17-10(15(18)23)5-3-4-8-19-13(22)7-2-1-6-12-14-11(9-25-12)20-16(24)21-14/h10-12,14H,1-9,17H2,(H2,18,23)(H,19,22)(H2,20,21,24)/t10-,11-,12-,14-/m0/s1"  
41M  InChIKey          InChI                 1.03   BFTIPPVTTJTHLM-MNXVOIDGSA-N  
41M  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCCCNC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)C(N)=O"  
41M  SMILES            CACTVS                3.385  "N[CH](CCCCNC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12)C(N)=O"  
41M  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)NCCCC[C@@H](C(=O)N)N)NC(=O)N2"  
41M  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C2C(C(S1)CCCCC(=O)NCCCCC(C(=O)N)N)NC(=O)N2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
41M  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysinamide"  
41M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S)-6-[5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-2-azanyl-hexanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
41M  "Create component"    2015-01-13  RCSB  
41M  "Modify synonyms"     2015-02-26  RCSB  
41M  "Initial release"     2015-03-04  RCSB  
41M  "Other modification"  2019-12-08  RCSB  
41M  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     41M
_pdbx_chem_comp_synonyms.name        N-epsilon-Biotinyl-lysine-amid
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
