data_3KM
# 
_chem_comp.id                                    3KM 
_chem_comp.name                                  "3-({(2S)-3-[4-(2-aminoethyl)piperidin-1-yl]-2-[(naphthalen-2-ylsulfonyl)amino]-3-oxopropyl}oxy)benzenecarboximidamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H33 N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-09-04 
_chem_comp.pdbx_modified_date                    2015-02-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.647 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3KM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4R0I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3KM N1  N1  N 0 1 N N N 15.145 7.166  28.125 -0.542 -1.913 -0.731 N1  3KM 1  
3KM N3  N3  N 0 1 N N N 13.149 13.723 25.698 6.824  -2.160 -1.653 N3  3KM 2  
3KM C4  C4  C 0 1 Y N N 20.113 5.596  28.166 -5.692 -0.914 -0.238 C4  3KM 3  
3KM C5  C5  C 0 1 Y N N 19.750 6.576  29.107 -4.837 -0.611 0.852  C5  3KM 4  
3KM C6  C6  C 0 1 Y N N 20.780 7.341  29.716 -5.265 0.302  1.830  C6  3KM 5  
3KM C7  C7  C 0 1 Y N N 19.112 4.830  27.571 -5.265 -1.827 -1.216 C7  3KM 6  
3KM C8  C8  C 0 1 Y N N 17.763 5.021  27.903 -4.038 -2.407 -1.106 C8  3KM 7  
3KM C10 C10 C 0 1 Y N N 18.389 6.780  29.429 -3.578 -1.230 0.932  C10 3KM 8  
3KM C13 C13 C 0 1 N N N 13.568 7.115  26.379 1.015  -0.630 0.651  C13 3KM 9  
3KM C15 C15 C 0 1 N N N 15.980 5.832  24.011 -0.128 2.600  -2.369 C15 3KM 10 
3KM C17 C17 C 0 1 N N N 18.286 5.226  23.398 0.368  4.402  -0.712 C17 3KM 11 
3KM C20 C20 C 0 1 Y N N 13.432 10.053 25.585 4.466  -1.452 -0.252 C20 3KM 12 
3KM C21 C21 C 0 1 Y N N 13.762 11.374 25.259 5.700  -1.543 0.390  C21 3KM 13 
3KM C22 C22 C 0 1 Y N N 14.505 11.642 24.084 5.790  -1.282 1.757  C22 3KM 14 
3KM C24 C24 C 0 1 Y N N 14.600 9.297  23.602 3.438  -0.839 1.830  C24 3KM 15 
3KM C26 C26 C 0 1 N N N 19.373 4.139  23.418 1.309  5.557  -0.365 C26 3KM 16 
3KM C1  C1  C 0 1 Y N N 22.147 7.146  29.385 -6.491 0.882  1.719  C1  3KM 17 
3KM O1  O1  O 0 1 N N N 13.507 7.723  25.087 2.135  -1.001 -0.154 O1  3KM 18 
3KM S1  S1  S 0 1 N N N 15.763 6.193  29.211 -1.619 -2.884 0.069  S1  3KM 19 
3KM C2  C2  C 0 1 Y N N 22.499 6.161  28.440 -7.332 0.585  0.649  C2  3KM 20 
3KM N2  N2  N 0 1 N N N 16.558 6.952  24.747 -0.236 1.687  -1.223 N2  3KM 21 
3KM O2  O2  O 0 1 N N N 16.772 8.360  26.477 0.373  -0.066 -2.440 O2  3KM 22 
3KM C3  C3  C 0 1 Y N N 21.478 5.389  27.839 -6.953 -0.298 -0.315 C3  3KM 23 
3KM O3  O3  O 0 1 N N N 15.585 6.838  30.546 -1.711 -4.086 -0.683 O3  3KM 24 
3KM N4  N4  N 0 1 N N N 12.736 12.180 27.334 8.129  -2.006 0.261  N4  3KM 25 
3KM O4  O4  O 0 1 N N N 14.972 4.924  29.090 -1.246 -2.852 1.440  O4  3KM 26 
3KM N5  N5  N 0 1 N N N 18.697 3.313  21.221 1.676  7.412  1.191  N5  3KM 27 
3KM C9  C9  C 0 1 Y N N 17.362 5.994  28.844 -3.198 -2.110 -0.035 C9  3KM 28 
3KM C11 C11 C 0 1 N N S 15.011 6.752  26.750 -0.243 -0.574 -0.219 C11 3KM 29 
3KM C12 C12 C 0 1 N N N 16.167 7.406  25.959 -0.013 0.366  -1.374 C12 3KM 30 
3KM C14 C14 C 0 1 Y N N 13.854 9.013  24.772 3.339  -1.097 0.469  C14 3KM 31 
3KM C16 C16 C 0 1 N N N 17.025 4.718  24.090 0.836  3.734  -2.007 C16 3KM 32 
3KM C18 C18 C 0 1 N N N 18.748 6.507  24.105 0.377  3.378  0.425  C18 3KM 33 
3KM C19 C19 C 0 1 N N N 17.669 7.580  24.023 -0.593 2.240  0.090  C19 3KM 34 
3KM C23 C23 C 0 1 Y N N 14.941 10.613 23.256 4.660  -0.935 2.469  C23 3KM 35 
3KM C25 C25 C 0 1 N N N 13.222 12.458 26.144 6.911  -1.917 -0.377 C25 3KM 36 
3KM C27 C27 C 0 1 N N N 18.958 2.912  22.598 0.772  6.303  0.858  C27 3KM 37 
3KM H1  H1  H 0 1 N N N 15.716 7.987  28.121 -0.107 -2.233 -1.537 H1  3KM 38 
3KM H2  H2  H 0 1 N N N 12.711 14.329 26.361 7.617  -2.405 -2.155 H2  3KM 39 
3KM H3  H3  H 0 1 N N N 20.517 8.089  30.449 -4.624 0.542  2.666  H3  3KM 40 
3KM H4  H4  H 0 1 N N N 19.379 4.078  26.843 -5.906 -2.068 -2.052 H4  3KM 41 
3KM H5  H5  H 0 1 N N N 17.012 4.408  27.427 -3.712 -3.109 -1.860 H5  3KM 42 
3KM H6  H6  H 0 1 N N N 18.124 7.552  30.137 -2.916 -1.009 1.755  H6  3KM 43 
3KM H7  H7  H 0 1 N N N 13.171 7.818  27.126 0.876  -1.366 1.443  H7  3KM 44 
3KM H8  H8  H 0 1 N N N 12.957 6.200  26.375 1.194  0.350  1.094  H8  3KM 45 
3KM H9  H9  H 0 1 N N N 15.794 6.113  22.964 0.254  2.057  -3.234 H9  3KM 46 
3KM H10 H10 H 0 1 N N N 15.037 5.510  24.477 -1.109 3.015  -2.600 H10 3KM 47 
3KM H11 H11 H 0 1 N N N 18.046 5.466  22.352 -0.643 4.786  -0.847 H11 3KM 48 
3KM H12 H12 H 0 1 N N N 12.849 9.845  26.470 4.390  -1.653 -1.311 H12 3KM 49 
3KM H13 H13 H 0 1 N N N 14.738 12.665 23.826 6.744  -1.352 2.258  H13 3KM 50 
3KM H14 H14 H 0 1 N N N 14.913 8.484  22.963 2.557  -0.562 2.391  H14 3KM 51 
3KM H15 H15 H 0 1 N N N 19.550 3.830  24.459 2.302  5.164  -0.144 H15 3KM 52 
3KM H16 H16 H 0 1 N N N 20.300 4.554  22.996 1.371  6.242  -1.211 H16 3KM 53 
3KM H17 H17 H 0 1 N N N 22.911 7.748  29.854 -6.818 1.584  2.473  H17 3KM 54 
3KM H18 H18 H 0 1 N N N 23.534 5.998  28.179 -8.300 1.060  0.585  H18 3KM 55 
3KM H19 H19 H 0 1 N N N 21.742 4.629  27.119 -7.615 -0.519 -1.140 H19 3KM 56 
3KM H20 H20 H 0 1 N N N 12.323 12.904 27.887 8.922  -2.251 -0.242 H20 3KM 57 
3KM H21 H21 H 0 1 N N N 12.780 11.245 27.686 8.194  -1.825 1.211  H21 3KM 58 
3KM H22 H22 H 0 1 N N N 18.426 2.513  20.686 1.343  7.921  1.996  H22 3KM 59 
3KM H23 H23 H 0 1 N N N 17.961 3.989  21.205 2.618  7.080  1.337  H23 3KM 60 
3KM H25 H25 H 0 1 N N N 15.122 5.660  26.681 -1.082 -0.217 0.378  H25 3KM 61 
3KM H26 H26 H 0 1 N N N 16.653 3.817  23.580 1.838  3.328  -1.865 H26 3KM 62 
3KM H27 H27 H 0 1 N N N 17.243 4.481  25.142 0.852  4.469  -2.811 H27 3KM 63 
3KM H28 H28 H 0 1 N N N 18.956 6.283  25.162 1.383  2.976  0.544  H28 3KM 64 
3KM H29 H29 H 0 1 N N N 19.664 6.877  23.622 0.066  3.861  1.352  H29 3KM 65 
3KM H30 H30 H 0 1 N N N 17.992 8.510  24.515 -1.612 2.626  0.060  H30 3KM 66 
3KM H31 H31 H 0 1 N N N 17.396 7.793  22.979 -0.517 1.461  0.848  H31 3KM 67 
3KM H32 H32 H 0 1 N N N 15.525 10.821 22.372 4.731  -0.733 3.527  H32 3KM 68 
3KM H33 H33 H 0 1 N N N 18.047 2.473  23.031 -0.220 6.697  0.636  H33 3KM 69 
3KM H34 H34 H 0 1 N N N 19.768 2.168  22.616 0.711  5.618  1.703  H34 3KM 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3KM N5  C27 SING N N 1  
3KM C27 C26 SING N N 2  
3KM C23 C24 DOUB Y N 3  
3KM C23 C22 SING Y N 4  
3KM C17 C26 SING N N 5  
3KM C17 C16 SING N N 6  
3KM C17 C18 SING N N 7  
3KM C24 C14 SING Y N 8  
3KM C15 C16 SING N N 9  
3KM C15 N2  SING N N 10 
3KM C19 C18 SING N N 11 
3KM C19 N2  SING N N 12 
3KM C22 C21 DOUB Y N 13 
3KM N2  C12 SING N N 14 
3KM C14 O1  SING N N 15 
3KM C14 C20 DOUB Y N 16 
3KM O1  C13 SING N N 17 
3KM C21 C20 SING Y N 18 
3KM C21 C25 SING N N 19 
3KM N3  C25 DOUB N N 20 
3KM C12 O2  DOUB N N 21 
3KM C12 C11 SING N N 22 
3KM C25 N4  SING N N 23 
3KM C13 C11 SING N N 24 
3KM C11 N1  SING N N 25 
3KM C7  C8  DOUB Y N 26 
3KM C7  C4  SING Y N 27 
3KM C3  C4  DOUB Y N 28 
3KM C3  C2  SING Y N 29 
3KM C8  C9  SING Y N 30 
3KM N1  S1  SING N N 31 
3KM C4  C5  SING Y N 32 
3KM C2  C1  DOUB Y N 33 
3KM C9  S1  SING N N 34 
3KM C9  C10 DOUB Y N 35 
3KM O4  S1  DOUB N N 36 
3KM C5  C10 SING Y N 37 
3KM C5  C6  DOUB Y N 38 
3KM S1  O3  DOUB N N 39 
3KM C1  C6  SING Y N 40 
3KM N1  H1  SING N N 41 
3KM N3  H2  SING N N 42 
3KM C6  H3  SING N N 43 
3KM C7  H4  SING N N 44 
3KM C8  H5  SING N N 45 
3KM C10 H6  SING N N 46 
3KM C13 H7  SING N N 47 
3KM C13 H8  SING N N 48 
3KM C15 H9  SING N N 49 
3KM C15 H10 SING N N 50 
3KM C17 H11 SING N N 51 
3KM C20 H12 SING N N 52 
3KM C22 H13 SING N N 53 
3KM C24 H14 SING N N 54 
3KM C26 H15 SING N N 55 
3KM C26 H16 SING N N 56 
3KM C1  H17 SING N N 57 
3KM C2  H18 SING N N 58 
3KM C3  H19 SING N N 59 
3KM N4  H20 SING N N 60 
3KM N4  H21 SING N N 61 
3KM N5  H22 SING N N 62 
3KM N5  H23 SING N N 63 
3KM C11 H25 SING N N 64 
3KM C16 H26 SING N N 65 
3KM C16 H27 SING N N 66 
3KM C18 H28 SING N N 67 
3KM C18 H29 SING N N 68 
3KM C19 H30 SING N N 69 
3KM C19 H31 SING N N 70 
3KM C23 H32 SING N N 71 
3KM C27 H33 SING N N 72 
3KM C27 H34 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3KM SMILES           ACDLabs              12.01 "O=C(N1CCC(CCN)CC1)C(NS(=O)(=O)c3cc2ccccc2cc3)COc4cc(C(=[N@H])N)ccc4"                                                                                                                              
3KM InChI            InChI                1.03  "InChI=1S/C27H33N5O4S/c28-13-10-19-11-14-32(15-12-19)27(33)25(18-36-23-7-3-6-22(16-23)26(29)30)31-37(34,35)24-9-8-20-4-1-2-5-21(20)17-24/h1-9,16-17,19,25,31H,10-15,18,28H2,(H3,29,30)/t25-/m0/s1" 
3KM InChIKey         InChI                1.03  LNOODAVJDWKXFO-VWLOTQADSA-N                                                                                                                                                                        
3KM SMILES_CANONICAL CACTVS               3.385 "NCC[C@H]1CCN(CC1)C(=O)[C@H](COc2cccc(c2)C(N)=N)N[S](=O)(=O)c3ccc4ccccc4c3"                                                                                                                        
3KM SMILES           CACTVS               3.385 "NCC[CH]1CCN(CC1)C(=O)[CH](COc2cccc(c2)C(N)=N)N[S](=O)(=O)c3ccc4ccccc4c3"                                                                                                                          
3KM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\c1cccc(c1)OC[C@@H](C(=O)N2CCC(CC2)CCN)NS(=O)(=O)c3ccc4ccccc4c3)/N"                                                                                                                       
3KM SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)S(=O)(=O)NC(COc3cccc(c3)C(=N)N)C(=O)N4CCC(CC4)CCN"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3KM "SYSTEMATIC NAME" ACDLabs              12.01 "3-({(2S)-3-[4-(2-aminoethyl)piperidin-1-yl]-2-[(naphthalen-2-ylsulfonyl)amino]-3-oxopropyl}oxy)benzenecarboximidamide"       
3KM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(2S)-3-[4-(2-azanylethyl)piperidin-1-yl]-2-(naphthalen-2-ylsulfonylamino)-3-oxidanylidene-propoxy]benzenecarboximidamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3KM "Create component" 2014-09-04 PDBJ 
3KM "Initial release"  2015-02-11 RCSB 
# 
