data_3CM
#

_chem_comp.id                                   3CM
_chem_comp.name                                 "3-CYCLOHEXYLPROPYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE"
_chem_comp.type                                 D-SACCHARIDE
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C21 H38 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CYMAL-3
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-08-09
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       466.520
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3CM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2HZA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3CM  C1    C1    C  0  1  N  N  R   9.755  36.603  21.082  -4.015   0.965  -0.496  C1    3CM   1  
3CM  C2    C2    C  0  1  N  N  R  10.348  35.388  20.302  -5.314   1.249   0.261  C2    3CM   2  
3CM  C3    C3    C  0  1  N  N  S  10.905  34.383  21.305  -5.747  -0.016   1.009  C3    3CM   3  
3CM  C4    C4    C  0  1  N  N  S  11.974  35.056  22.187  -5.898  -1.163   0.005  C4    3CM   4  
3CM  C5    C5    C  0  1  N  N  R  11.342  36.281  22.912  -4.575  -1.354  -0.742  C5    3CM   5  
3CM  C6    C6    C  0  1  N  N  N  12.358  37.013  23.761  -4.735  -2.458  -1.789  C6    3CM   6  
3CM  O2    O2    O  0  1  N  N  N   9.296  34.806  19.466  -5.101   2.308   1.196  O2    3CM   7  
3CM  O3    O3    O  0  1  N  N  N  11.461  33.272  20.564  -6.997   0.218   1.661  O3    3CM   8  
3CM  O5    O5    O  0  1  N  N  N  10.788  37.190  21.946  -4.215  -0.132  -1.390  O5    3CM   9  
3CM  O6    O6    O  0  1  N  N  N  13.238  37.792  22.952  -3.472  -2.717  -2.406  O6    3CM  10  
3CM  O1    O1    O  0  1  N  N  N   8.690  36.087  21.881  -2.982   0.638   0.435  O1    3CM  11  
3CM  O4    O4    O  0  1  N  N  N  12.471  34.152  23.154  -6.231  -2.366   0.701  O4    3CM  12  
3CM  C10   C10   C  0  1  N  N  R   4.837  36.954  23.178   1.168   1.041   0.191  C10   3CM  13  
3CM  C20   C20   C  0  1  N  N  R   4.965  36.480  21.713   0.339   2.011  -0.654  C20   3CM  14  
3CM  C30   C30   C  0  1  N  N  R   6.313  35.764  21.603  -1.095   2.047  -0.117  C30   3CM  15  
3CM  C40   C40   C  0  1  N  N  S   7.405  36.759  21.988  -1.670   0.627  -0.131  C40   3CM  16  
3CM  C50   C50   C  0  1  N  N  R   7.216  37.245  23.405  -0.763  -0.289   0.694  C50   3CM  17  
3CM  C60   C60   C  0  1  N  N  N   8.250  38.292  23.850  -1.298  -1.722   0.636  C60   3CM  18  
3CM  O10   O10   O  0  1  N  N  N   3.613  37.641  23.337   2.493   0.959  -0.338  O10   3CM  19  
3CM  O20   O20   O  0  1  N  N  N   3.914  35.605  21.372   0.910   3.319  -0.578  O20   3CM  20  
3CM  O30   O30   O  0  1  N  N  N   6.492  35.316  20.263  -1.894   2.895  -0.945  O30   3CM  21  
3CM  O50   O50   O  0  1  N  N  N   5.920  37.851  23.534   0.562  -0.253   0.161  O50   3CM  22  
3CM  O60   O60   O  0  1  N  N  N   8.387  38.229  25.292  -0.508  -2.560   1.482  O60   3CM  23  
3CM  C11   C11   C  0  1  N  N  N   3.013  37.465  24.637   3.384   0.164   0.446  C11   3CM  24  
3CM  C21   C21   C  0  1  N  N  N   1.603  37.991  24.562   4.766   0.148  -0.211  C21   3CM  25  
3CM  C31   C31   C  0  1  N  N  N   0.769  36.977  25.344   5.720  -0.704   0.628  C31   3CM  26  
3CM  C12   C12   C  0  1  N  N  N  -0.702  37.150  25.020   7.101  -0.720  -0.029  C12   3CM  27  
3CM  C22   C22   C  0  1  N  N  N  -1.497  37.226  26.313   8.021  -1.670   0.740  C22   3CM  28  
3CM  C32   C32   C  0  1  N  N  N  -2.838  36.539  26.348   9.403  -1.687   0.083  C32   3CM  29  
3CM  C42   C42   C  0  1  N  N  N  -3.567  36.388  25.001   9.994  -0.276   0.104  C42   3CM  30  
3CM  C52   C52   C  0  1  N  N  N  -2.660  35.773  23.925   9.074   0.674  -0.665  C52   3CM  31  
3CM  C62   C62   C  0  1  N  N  N  -1.136  36.045  24.067   7.693   0.691  -0.008  C62   3CM  32  
3CM  HO6   HO6   H  0  1  N  N  N  13.865  38.241  23.507  -3.499  -3.408  -3.082  HO6   3CM  33  
3CM  H61   H61   H  0  1  N  N  N  11.828  37.680  24.456  -5.097  -3.366  -1.306  H61   3CM  34  
3CM  H62A  H62A  H  0  0  N  N  N  12.950  36.276  24.324  -5.451  -2.140  -2.547  H62A  3CM  35  
3CM  H5    H5    H  0  1  N  N  N  10.548  35.903  23.573  -3.795  -1.634  -0.035  H5    3CM  36  
3CM  H1    H1    H  0  1  N  N  N   9.398  37.386  20.397  -3.725   1.849  -1.065  H1    3CM  37  
3CM  H40   H40   H  0  1  N  N  N   7.357  37.628  21.316  -1.719   0.264  -1.158  H40   3CM  38  
3CM  H30   H30   H  0  1  N  N  N   6.356  34.891  22.271  -1.093   2.430   0.904  H30   3CM  39  
3CM  HO30  HO30  H  0  0  N  N  N   7.327  34.870  20.187  -1.583   3.809  -0.988  HO30  3CM  40  
3CM  H20   H20   H  0  1  N  N  N   4.908  37.333  21.021   0.331   1.676  -1.691  H20   3CM  41  
3CM  HO20  HO20  H  0  0  N  N  N   4.013  35.327  20.469   1.822   3.369  -0.898  HO20  3CM  42  
3CM  H10   H10   H  0  1  N  N  N   4.878  36.070  23.832   1.209   1.399   1.220  H10   3CM  43  
3CM  H111  H111  H  0  0  N  N  N   3.005  36.399  24.909   3.463   0.587   1.448  H111  3CM  44  
3CM  H112  H112  H  0  0  N  N  N   3.584  38.020  25.395   3.001  -0.854   0.512  H112  3CM  45  
3CM  H211  H211  H  0  0  N  N  N   1.530  38.993  25.010   4.686  -0.275  -1.212  H211  3CM  46  
3CM  H212  H212  H  0  0  N  N  N   1.262  38.063  23.519   5.149   1.166  -0.276  H212  3CM  47  
3CM  H311  H311  H  0  0  N  N  N   1.084  35.960  25.069   5.799  -0.281   1.630  H311  3CM  48  
3CM  H312  H312  H  0  0  N  N  N   0.924  37.134  26.422   5.336  -1.722   0.694  H312  3CM  49  
3CM  H12   H12   H  0  1  N  N  N  -0.896  38.097  24.495   7.009  -1.060  -1.061  H12   3CM  50  
3CM  H6    H6    H  0  1  N  N  N  -0.879  36.760  27.095   8.114  -1.331   1.772  H6    3CM  51  
3CM  H7    H7    H  0  1  N  N  N  -2.674  35.526  26.745  10.058  -2.364   0.631  H7    3CM  52  
3CM  H421  H421  H  0  0  N  N  N  -4.439  35.732  25.144  10.087   0.064   1.136  H421  3CM  53  
3CM  H422  H422  H  0  0  N  N  N  -3.891  37.383  24.662  10.978  -0.287  -0.364  H422  3CM  54  
3CM  H8    H8    H  0  1  N  N  N  -2.801  34.683  23.964   9.496   1.679  -0.650  H8    3CM  55  
3CM  H9    H9    H  0  1  N  N  N  -0.767  36.322  23.068   7.037   1.368  -0.556  H9    3CM  56  
3CM  H50   H50   H  0  1  N  N  N   7.335  36.356  24.042  -0.748   0.051   1.730  H50   3CM  57  
3CM  H601  H601  H  0  0  N  N  N   9.220  38.080  23.376  -2.334  -1.737   0.974  H601  3CM  58  
3CM  H602  H602  H  0  0  N  N  N   7.913  39.296  23.553  -1.245  -2.088  -0.389  H602  3CM  59  
3CM  HO60  HO60  H  0  0  N  N  N   9.024  38.873  25.578  -0.790  -3.484   1.495  HO60  3CM  60  
3CM  H2    H2    H  0  1  N  N  N  11.172  35.700  19.643  -6.092   1.538  -0.446  H2    3CM  61  
3CM  HO2   HO2   H  0  1  N  N  N   9.646  34.065  18.986  -4.820   3.140   0.790  HO2   3CM  62  
3CM  H3    H3    H  0  1  N  N  N  10.110  34.017  21.971  -4.992  -0.277   1.750  H3    3CM  63  
3CM  HO3   HO3   H  0  1  N  N  N  11.815  32.632  21.170  -6.975   0.937   2.307  HO3   3CM  64  
3CM  H4    H4    H  0  1  N  N  N  12.807  35.378  21.545  -6.687  -0.923  -0.707  H4    3CM  65  
3CM  HO4   HO4   H  0  1  N  N  N  13.127  34.586  23.686  -7.056  -2.315   1.202  HO4   3CM  66  
3CM  H22   H22   H  0  1  N  N  N  -1.679  38.292  26.513   7.600  -2.675   0.725  H22   3CM  67  
3CM  H32   H32   H  0  1  N  N  N  -3.490  37.132  27.006   9.310  -2.026  -0.948  H32   3CM  68  
3CM  H52   H52   H  0  1  N  N  N  -2.976  36.188  22.957   8.982   0.335  -1.697  H52   3CM  69  
3CM  H62   H62   H  0  1  N  N  N  -0.678  35.113  24.430   7.785   1.031   1.024  H62   3CM  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3CM  C1   O5    SING  N  N   1  
3CM  C1   H1    SING  N  N   2  
3CM  C1   O1    SING  N  N   3  
3CM  C1   C2    SING  N  N   4  
3CM  C2   H2    SING  N  N   5  
3CM  C2   O2    SING  N  N   6  
3CM  C2   C3    SING  N  N   7  
3CM  C3   H3    SING  N  N   8  
3CM  C3   O3    SING  N  N   9  
3CM  C3   C4    SING  N  N  10  
3CM  C4   C5    SING  N  N  11  
3CM  C4   H4    SING  N  N  12  
3CM  C4   O4    SING  N  N  13  
3CM  C5   C6    SING  N  N  14  
3CM  C5   H5    SING  N  N  15  
3CM  C5   O5    SING  N  N  16  
3CM  C6   O6    SING  N  N  17  
3CM  C6   H61   SING  N  N  18  
3CM  C6   H62A  SING  N  N  19  
3CM  O2   HO2   SING  N  N  20  
3CM  O3   HO3   SING  N  N  21  
3CM  O6   HO6   SING  N  N  22  
3CM  O1   C40   SING  N  N  23  
3CM  O4   HO4   SING  N  N  24  
3CM  C10  C20   SING  N  N  25  
3CM  C10  H10   SING  N  N  26  
3CM  C10  O10   SING  N  N  27  
3CM  C10  O50   SING  N  N  28  
3CM  C20  C30   SING  N  N  29  
3CM  C20  H20   SING  N  N  30  
3CM  C20  O20   SING  N  N  31  
3CM  C30  C40   SING  N  N  32  
3CM  C30  H30   SING  N  N  33  
3CM  C30  O30   SING  N  N  34  
3CM  C40  H40   SING  N  N  35  
3CM  C40  C50   SING  N  N  36  
3CM  C50  O50   SING  N  N  37  
3CM  C50  H50   SING  N  N  38  
3CM  C50  C60   SING  N  N  39  
3CM  C60  H601  SING  N  N  40  
3CM  C60  H602  SING  N  N  41  
3CM  C60  O60   SING  N  N  42  
3CM  O10  C11   SING  N  N  43  
3CM  O20  HO20  SING  N  N  44  
3CM  O30  HO30  SING  N  N  45  
3CM  O60  HO60  SING  N  N  46  
3CM  C11  H111  SING  N  N  47  
3CM  C11  H112  SING  N  N  48  
3CM  C11  C21   SING  N  N  49  
3CM  C21  H211  SING  N  N  50  
3CM  C21  H212  SING  N  N  51  
3CM  C21  C31   SING  N  N  52  
3CM  C31  H311  SING  N  N  53  
3CM  C31  H312  SING  N  N  54  
3CM  C31  C12   SING  N  N  55  
3CM  C12  H12   SING  N  N  56  
3CM  C12  C22   SING  N  N  57  
3CM  C12  C62   SING  N  N  58  
3CM  C22  H6    SING  N  N  59  
3CM  C22  C32   SING  N  N  60  
3CM  C22  H22   SING  N  N  61  
3CM  C32  H7    SING  N  N  62  
3CM  C32  C42   SING  N  N  63  
3CM  C32  H32   SING  N  N  64  
3CM  C42  H421  SING  N  N  65  
3CM  C42  H422  SING  N  N  66  
3CM  C42  C52   SING  N  N  67  
3CM  C52  H8    SING  N  N  68  
3CM  C52  C62   SING  N  N  69  
3CM  C52  H52   SING  N  N  70  
3CM  C62  H9    SING  N  N  71  
3CM  C62  H62   SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3CM  SMILES            ACDLabs               12.01  "O(CCCC1CCCCC1)C3OC(C(OC2OC(CO)C(O)C(O)C2O)C(O)C3O)CO"  
3CM  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCCCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"  
3CM  SMILES            CACTVS                3.370  "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCCCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O"  
3CM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C1CCC(CC1)CCCO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O"  
3CM  SMILES            "OpenEye OEToolkits"  1.7.0  "C1CCC(CC1)CCCOC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O"  
3CM  InChI             InChI                 1.03   "InChI=1S/C21H38O11/c22-9-12-14(24)15(25)17(27)21(30-12)32-19-13(10-23)31-20(18(28)16(19)26)29-8-4-7-11-5-2-1-3-6-11/h11-28H,1-10H2/t12-,13-,14-,15+,16-,17-,18-,19-,20-,21-/m1/s1"  
3CM  InChIKey          InChI                 1.03   FDBLAHXBTQUZSM-ZESVGKPKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3CM  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-cyclohexylpropyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside"  
3CM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-(3-cyclohexylpropoxy)-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3CM  "Create component"   2006-08-09  RCSB  
3CM  "Modify descriptor"  2011-06-04  RCSB  
3CM  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3CM
_pdbx_chem_comp_synonyms.name        CYMAL-3
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
