data_0JM
#

_chem_comp.id                                   0JM
_chem_comp.name                                 
;(2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carbo
xylic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C17 H20 N2 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Carbenicillin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-08-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       380.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0JM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4GCQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0JM  O5   O5   O  0  1  N  N  N  14.684   5.397   3.081  -4.147  -2.148   1.151  O5   0JM   1  
0JM  C16  C16  C  0  1  N  N  N  14.815   5.409   1.827  -4.058  -1.020   0.429  C16  0JM   2  
0JM  O1   O1   O  0  1  N  N  N  15.761   4.823   1.247  -5.051  -0.541  -0.066  O1   0JM   3  
0JM  C13  C13  C  0  1  N  N  S  13.832   6.139   0.934  -2.721  -0.352   0.235  C13  0JM   4  
0JM  C12  C12  C  0  1  N  N  N  13.000   7.263   1.632  -1.961  -1.092  -0.875  C12  0JM   5  
0JM  C14  C14  C  0  1  N  N  N  13.710   7.999   2.775  -2.827  -2.204  -1.470  C14  0JM   6  
0JM  C15  C15  C  0  1  N  N  N  11.661   6.755   2.159  -0.650  -1.667  -0.335  C15  0JM   7  
0JM  S1   S1   S  0  1  N  N  N  12.712   8.442   0.352  -1.626   0.205  -2.125  S1   0JM   8  
0JM  N2   N2   N  0  1  N  N  N  14.637   6.693  -0.189  -2.944   1.061  -0.042  N2   0JM   9  
0JM  C11  C11  C  0  1  N  N  R  14.255   8.091  -0.476  -2.008   1.629  -1.039  C11  0JM  10  
0JM  C10  C10  C  0  1  N  N  R  14.327   6.271  -1.569  -2.266   1.901   0.966  C10  0JM  11  
0JM  O4   O4   O  0  1  N  N  N  15.457   5.760  -2.270  -2.806   3.220   1.065  O4   0JM  12  
0JM  C9   C9   C  0  1  N  N  R  14.205   7.734  -1.961  -1.001   1.819   0.100  C9   0JM  13  
0JM  N1   N1   N  0  1  N  N  N  12.890   7.951  -2.539  -0.166   0.645   0.366  N1   0JM  14  
0JM  C8   C8   C  0  1  N  N  N  12.476   9.134  -3.018   1.152   0.679   0.087  C8   0JM  15  
0JM  O6   O6   O  0  1  N  N  N  13.148  10.161  -3.021   1.656   1.696  -0.341  O6   0JM  16  
0JM  C7   C7   C  0  1  N  N  R  11.065   9.153  -3.566   2.001  -0.547   0.306  C7   0JM  17  
0JM  C17  C17  C  0  1  N  N  N  10.977  10.085  -4.738   2.017  -0.890   1.774  C17  0JM  18  
0JM  O2   O2   O  0  1  N  N  N   9.870  10.607  -5.001   2.714  -1.952   2.207  O2   0JM  19  
0JM  O3   O3   O  0  1  N  N  N  12.021  10.300  -5.403   1.404  -0.209   2.561  O3   0JM  20  
0JM  C1   C1   C  0  1  Y  N  N  10.072   9.435  -2.474   3.407  -0.276  -0.162  C1   0JM  21  
0JM  C6   C6   C  0  1  Y  N  N  10.470  10.061  -1.284   3.962  -1.048  -1.165  C6   0JM  22  
0JM  C2   C2   C  0  1  Y  N  N   8.745   9.047  -2.627   4.140   0.749   0.407  C2   0JM  23  
0JM  C3   C3   C  0  1  Y  N  N   7.840   9.287  -1.601   5.429   0.998  -0.023  C3   0JM  24  
0JM  C4   C4   C  0  1  Y  N  N   8.250   9.911  -0.427   5.987   0.222  -1.022  C4   0JM  25  
0JM  C5   C5   C  0  1  Y  N  N   9.574  10.305  -0.251   5.252  -0.799  -1.595  C5   0JM  26  
0JM  H1   H1   H  0  1  N  N  N  15.391   4.894   3.469  -5.025  -2.540   1.248  H1   0JM  27  
0JM  H2   H2   H  0  1  N  N  N  13.123   5.402   0.527  -2.154  -0.437   1.162  H2   0JM  28  
0JM  H3   H3   H  0  1  N  N  N  13.909   7.296   3.597  -3.735  -1.771  -1.891  H3   0JM  29  
0JM  H4   H4   H  0  1  N  N  N  14.661   8.413   2.409  -2.272  -2.717  -2.255  H4   0JM  30  
0JM  H5   H5   H  0  1  N  N  N  13.070   8.816   3.138  -3.093  -2.915  -0.688  H5   0JM  31  
0JM  H6   H6   H  0  1  N  N  N  11.836   6.019   2.958  -0.749  -1.855   0.734  H6   0JM  32  
0JM  H7   H7   H  0  1  N  N  N  11.080   7.599   2.559  -0.424  -2.602  -0.848  H7   0JM  33  
0JM  H8   H8   H  0  1  N  N  N  11.101   6.280   1.340   0.157  -0.955  -0.506  H8   0JM  34  
0JM  H10  H10  H  0  1  N  N  N  15.013   8.845  -0.218  -2.337   2.529  -1.559  H10  0JM  35  
0JM  H11  H11  H  0  1  N  N  N  13.395   5.697  -1.679  -2.161   1.415   1.936  H11  0JM  36  
0JM  H12  H12  H  0  1  N  N  N  15.575   4.842  -2.056  -2.368   3.777   1.723  H12  0JM  37  
0JM  H13  H13  H  0  1  N  N  N  15.052   8.120  -2.548  -0.435   2.750   0.046  H13  0JM  38  
0JM  H14  H14  H  0  1  N  N  N  12.259   7.176  -2.582  -0.562  -0.156   0.743  H14  0JM  39  
0JM  H15  H15  H  0  1  N  N  N  10.853   8.141  -3.941   1.585  -1.382  -0.257  H15  0JM  40  
0JM  H16  H16  H  0  1  N  N  N   9.958  11.170  -5.761   2.695  -2.132   3.157  H16  0JM  41  
0JM  H17  H17  H  0  1  N  N  N  11.501  10.361  -1.168   3.388  -1.846  -1.613  H17  0JM  42  
0JM  H18  H18  H  0  1  N  N  N   8.421   8.563  -3.536   3.704   1.355   1.187  H18  0JM  43  
0JM  H19  H19  H  0  1  N  N  N   6.809   8.987  -1.716   6.002   1.799   0.421  H19  0JM  44  
0JM  H20  H20  H  0  1  N  N  N   7.531  10.092   0.359   6.995   0.417  -1.358  H20  0JM  45  
0JM  H21  H21  H  0  1  N  N  N   9.895  10.786   0.661   5.686  -1.403  -2.379  H21  0JM  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0JM  O3   C17  DOUB  N  N   1  
0JM  O2   C17  SING  N  N   2  
0JM  C17  C7   SING  N  N   3  
0JM  C7   C8   SING  N  N   4  
0JM  C7   C1   SING  N  N   5  
0JM  O6   C8   DOUB  N  N   6  
0JM  C8   N1   SING  N  N   7  
0JM  C2   C1   DOUB  Y  N   8  
0JM  C2   C3   SING  Y  N   9  
0JM  N1   C9   SING  N  N  10  
0JM  C1   C6   SING  Y  N  11  
0JM  O4   C10  SING  N  N  12  
0JM  C9   C10  SING  N  N  13  
0JM  C9   C11  SING  N  N  14  
0JM  C3   C4   DOUB  Y  N  15  
0JM  C10  N2   SING  N  N  16  
0JM  C6   C5   DOUB  Y  N  17  
0JM  C11  N2   SING  N  N  18  
0JM  C11  S1   SING  N  N  19  
0JM  C4   C5   SING  Y  N  20  
0JM  N2   C13  SING  N  N  21  
0JM  S1   C12  SING  N  N  22  
0JM  C13  C12  SING  N  N  23  
0JM  C13  C16  SING  N  N  24  
0JM  O1   C16  DOUB  N  N  25  
0JM  C12  C15  SING  N  N  26  
0JM  C12  C14  SING  N  N  27  
0JM  C16  O5   SING  N  N  28  
0JM  O5   H1   SING  N  N  29  
0JM  C13  H2   SING  N  N  30  
0JM  C14  H3   SING  N  N  31  
0JM  C14  H4   SING  N  N  32  
0JM  C14  H5   SING  N  N  33  
0JM  C15  H6   SING  N  N  34  
0JM  C15  H7   SING  N  N  35  
0JM  C15  H8   SING  N  N  36  
0JM  C11  H10  SING  N  N  37  
0JM  C10  H11  SING  N  N  38  
0JM  O4   H12  SING  N  N  39  
0JM  C9   H13  SING  N  N  40  
0JM  N1   H14  SING  N  N  41  
0JM  C7   H15  SING  N  N  42  
0JM  O2   H16  SING  N  N  43  
0JM  C6   H17  SING  N  N  44  
0JM  C2   H18  SING  N  N  45  
0JM  C3   H19  SING  N  N  46  
0JM  C4   H20  SING  N  N  47  
0JM  C5   H21  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0JM  SMILES            ACDLabs               12.01  "O=C(O)C(c1ccccc1)C(=O)NC3C(O)N2C(C(=O)O)C(SC23)(C)C"  
0JM  InChI             InChI                 1.03   "InChI=1S/C17H20N2O6S/c1-17(2)11(16(24)25)19-13(21)10(14(19)26-17)18-12(20)9(15(22)23)8-6-4-3-5-7-8/h3-7,9-11,13-14,21H,1-2H3,(H,18,20)(H,22,23)(H,24,25)/t9-,10-,11+,13-,14-/m1/s1"  
0JM  InChIKey          InChI                 1.03   ASNJKAXIMWOZDG-KHQUWSPVSA-N  
0JM  SMILES_CANONICAL  CACTVS                3.370  "CC1(C)S[C@@H]2[C@H](NC(=O)[C@H](C(O)=O)c3ccccc3)[C@@H](O)N2[C@H]1C(O)=O"  
0JM  SMILES            CACTVS                3.370  "CC1(C)S[CH]2[CH](NC(=O)[CH](C(O)=O)c3ccccc3)[CH](O)N2[CH]1C(O)=O"  
0JM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CC1([C@@H](N2[C@@H]([C@H]([C@H]2S1)NC(=O)[C@@H](c3ccccc3)C(=O)O)O)C(=O)O)C"  
0JM  SMILES            "OpenEye OEToolkits"  1.7.6  "CC1(C(N2C(C(C2S1)NC(=O)C(c3ccccc3)C(=O)O)O)C(=O)O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0JM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
0JM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,5R,6R,7R)-3,3-dimethyl-7-oxidanyl-6-[[(2R)-3-oxidanyl-3-oxidanylidene-2-phenyl-propanoyl]amino]-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0JM  "Create component"  2012-08-13  RCSB  
0JM  "Initial release"   2012-12-14  RCSB  
0JM  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0JM
_pdbx_chem_comp_synonyms.name        Carbenicillin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
