data_05M
#

_chem_comp.id                                   05M
_chem_comp.name                                 "2,3-dimethoxy-5-methyl-6-[10-(triphenyl-$l^{5}-phosphanyl)decyl]cyclohexa-2,5-diene-1,4-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C37 H45 O4 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-02
_chem_comp.pdbx_modified_date                   2021-12-31
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       584.725
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    05M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EXP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
05M  C10  C1   C  0  1  N  N  N  -107.569  -20.511  110.777    7.346   2.551   1.207  C10  05M   1  
05M  C13  C2   C  0  1  N  N  N  -109.251  -24.107  112.125    4.931   0.095   0.416  C13  05M   2  
05M  C21  C3   C  0  1  N  N  N  -107.545  -32.876  109.542   -4.981  -0.053  -0.848  C21  05M   3  
05M  C24  C4   C  0  1  Y  N  N  -104.906  -33.724  108.293   -6.039   1.490   1.021  C24  05M   4  
05M  C26  C5   C  0  1  Y  N  N  -105.580  -34.705  107.557   -5.045   2.307   0.515  C26  05M   5  
05M  C28  C6   C  0  1  Y  N  N  -103.473  -35.814  107.111   -5.176   3.679   2.473  C28  05M   6  
05M  C01  C7   C  0  1  N  N  N  -110.453  -21.316  113.083    8.025  -1.082   0.183  C01  05M   7  
05M  C02  C8   C  0  1  N  N  N  -111.110  -20.079  113.160    9.323  -0.981  -0.512  C02  05M   8  
05M  C03  C9   C  0  1  N  N  N  -110.642  -18.951  112.470    9.932   0.221  -0.631  C03  05M   9  
05M  C04  C10  C  0  1  N  N  N  -109.484  -19.066  111.691    9.295   1.427  -0.065  C04  05M  10  
05M  C05  C11  C  0  1  N  N  N  -108.828  -20.313  111.614    7.995   1.319   0.630  C05  05M  11  
05M  C06  C12  C  0  1  N  N  N  -109.301  -21.442  112.295    7.389   0.130   0.742  C06  05M  12  
05M  C12  C13  C  0  1  N  N  N  -108.485  -22.759  112.141    6.061   0.027   1.446  C12  05M  13  
05M  C14  C14  C  0  1  N  N  N  -109.533  -24.641  110.704    3.582  -0.010   1.130  C14  05M  14  
05M  C23  C15  C  0  1  Y  N  N  -105.184  -31.192  110.373   -6.349  -1.717   0.687  C23  05M  15  
05M  C25  C16  C  0  1  Y  N  N  -105.865  -31.222  107.563   -7.496   0.268  -1.602  C25  05M  16  
05M  C27  C17  C  0  1  Y  N  N  -104.864  -35.758  106.973   -4.613   3.401   1.241  C27  05M  17  
05M  C29  C18  C  0  1  Y  N  N  -102.800  -34.823  107.831   -6.166   2.859   2.981  C29  05M  18  
05M  C30  C19  C  0  1  Y  N  N  -103.513  -33.773  108.415   -6.602   1.768   2.252  C30  05M  19  
05M  C31  C20  C  0  1  Y  N  N  -106.991  -31.083  106.756   -8.871   0.405  -1.641  C31  05M  20  
05M  C32  C21  C  0  1  Y  N  N  -106.920  -30.240  105.642   -9.512   0.593  -2.851  C32  05M  21  
05M  C33  C22  C  0  1  Y  N  N  -105.735  -29.558  105.343   -8.779   0.643  -4.022  C33  05M  22  
05M  C34  C23  C  0  1  Y  N  N  -104.609  -29.707  106.150   -7.404   0.507  -3.982  C34  05M  23  
05M  C35  C24  C  0  1  Y  N  N  -104.681  -30.546  107.254   -6.762   0.325  -2.772  C35  05M  24  
05M  C36  C25  C  0  1  Y  N  N  -106.033  -30.718  111.377   -7.283  -2.300   1.521  C36  05M  25  
05M  C37  C26  C  0  1  Y  N  N  -105.540  -29.859  112.369   -7.080  -3.581   1.998  C37  05M  26  
05M  C38  C27  C  0  1  Y  N  N  -104.198  -29.465  112.348   -5.942  -4.279   1.640  C38  05M  27  
05M  C39  C28  C  0  1  Y  N  N  -103.348  -29.929  111.341   -5.007  -3.696   0.806  C39  05M  28  
05M  C40  C29  C  0  1  Y  N  N  -103.841  -30.788  110.357   -5.210  -2.414   0.329  C40  05M  29  
05M  C41  C30  C  0  1  N  N  N  -111.980  -19.575  115.295   10.341  -3.089  -0.104  C41  05M  30  
05M  C42  C31  C  0  1  N  N  N  -111.825  -17.101  111.407   11.151   1.061  -2.490  C42  05M  31  
05M  O07  O1   O  0  1  N  N  N  -112.268  -19.976  113.962    9.905  -2.093  -1.031  O07  05M  32  
05M  O08  O2   O  0  1  N  N  N  -111.339  -17.712  112.597   11.126   0.319  -1.269  O08  05M  33  
05M  O09  O3   O  0  1  N  N  N  -109.064  -18.089  111.090    9.840   2.507  -0.170  O09  05M  34  
05M  O11  O4   O  0  1  N  N  N  -110.913  -22.254  113.705    7.476  -2.161   0.291  O11  05M  35  
05M  P22  P1   P  0  1  N  N  N  -105.845  -32.316  109.045   -6.628   0.014   0.035  P22  05M  36  
05M  H1   H1   H  0  1  N  N  N  -107.231  -21.554  110.863    7.978   3.418   1.015  H1   05M  37  
05M  H2   H2   H  0  1  N  N  N  -107.789  -20.283  109.724    6.372   2.701   0.741  H2   05M  38  
05M  H3   H3   H  0  1  N  N  N  -106.778  -19.838  111.140    7.219   2.424   2.282  H3   05M  39  
05M  H4   H4   H  0  1  N  N  N  -110.212  -23.967  112.641    4.986   1.042  -0.121  H4   05M  40  
05M  H5   H5   H  0  1  N  N  N  -108.651  -24.854  112.665    5.034  -0.729  -0.291  H5   05M  41  
05M  H6   H6   H  0  1  N  N  N  -107.781  -33.894  109.886   -4.946  -0.937  -1.485  H6   05M  42  
05M  H7   H7   H  0  1  N  N  N  -108.358  -32.193  109.831   -4.861   0.841  -1.461  H7   05M  43  
05M  H9   H9   H  0  1  N  N  N  -106.652  -34.650  107.439   -4.605   2.090  -0.447  H9   05M  44  
05M  H10  H10  H  0  1  N  N  N  -102.919  -36.624  106.661   -4.836   4.531   3.042  H10  05M  45  
05M  H11  H11  H  0  1  N  N  N  -107.773  -22.800  112.979    5.958   0.850   2.152  H11  05M  46  
05M  H12  H12  H  0  1  N  N  N  -107.931  -22.689  111.193    6.006  -0.921   1.982  H12  05M  47  
05M  H13  H13  H  0  1  N  N  N  -109.679  -25.728  110.785    3.528  -0.958   1.666  H13  05M  48  
05M  H14  H14  H  0  1  N  N  N  -110.464  -24.171  110.355    3.480   0.813   1.836  H14  05M  49  
05M  H16  H16  H  0  1  N  N  N  -105.384  -36.524  106.418   -3.836   4.039   0.846  H16  05M  50  
05M  H17  H17  H  0  1  N  N  N  -101.726  -34.869  107.936   -6.600   3.071   3.947  H17  05M  51  
05M  H18  H18  H  0  1  N  N  N  -102.990  -33.001  108.960   -7.382   1.133   2.645  H18  05M  52  
05M  H19  H19  H  0  1  N  N  N  -107.902  -31.616  106.986   -9.444   0.365  -0.726  H19  05M  53  
05M  H20  H20  H  0  1  N  N  N  -107.786  -30.115  105.008  -10.587   0.699  -2.882  H20  05M  54  
05M  H21  H21  H  0  1  N  N  N  -105.693  -28.911  104.479   -9.280   0.789  -4.967  H21  05M  55  
05M  H22  H22  H  0  1  N  N  N  -103.695  -29.179  105.921   -6.831   0.546  -4.897  H22  05M  56  
05M  H23  H23  H  0  1  N  N  N  -103.812  -30.678  107.881   -5.688   0.219  -2.741  H23  05M  57  
05M  H24  H24  H  0  1  N  N  N  -107.071  -31.014  111.389   -8.172  -1.755   1.801  H24  05M  58  
05M  H25  H25  H  0  1  N  N  N  -106.196  -29.502  113.149   -7.810  -4.037   2.651  H25  05M  59  
05M  H26  H26  H  0  1  N  N  N  -103.819  -28.801  113.111   -5.782  -5.280   2.013  H26  05M  60  
05M  H27  H27  H  0  1  N  N  N  -102.312  -29.624  111.324   -4.117  -4.241   0.526  H27  05M  61  
05M  H28  H28  H  0  1  N  N  N  -103.183  -31.144  109.578   -4.480  -1.959  -0.323  H28  05M  62  
05M  H29  H29  H  0  1  N  N  N  -112.916  -19.512  115.870   11.011  -2.637   0.627  H29  05M  63  
05M  H30  H30  H  0  1  N  N  N  -111.311  -20.312  115.763    9.476  -3.512   0.409  H30  05M  64  
05M  H31  H31  H  0  1  N  N  N  -111.490  -18.590  115.284   10.867  -3.879  -0.640  H31  05M  65  
05M  H32  H32  H  0  1  N  N  N  -112.336  -16.160  111.660   12.139   0.983  -2.943  H32  05M  66  
05M  H33  H33  H  0  1  N  N  N  -110.982  -16.890  110.733   10.405   0.658  -3.175  H33  05M  67  
05M  H34  H34  H  0  1  N  N  N  -112.532  -17.780  110.909   10.926   2.107  -2.284  H34  05M  68  
05M  C1   C32  C  0  1  N  N  N         ?        ?        ?    2.453   0.058   0.100  C1   05M  69  
05M  C2   C33  C  0  1  N  N  N         ?        ?        ?    1.104  -0.047   0.814  C2   05M  70  
05M  C3   C34  C  0  1  N  N  N         ?        ?        ?   -0.025   0.021  -0.216  C3   05M  71  
05M  C4   C35  C  0  1  N  N  N         ?        ?        ?   -1.374  -0.084   0.498  C4   05M  72  
05M  C5   C36  C  0  1  N  N  N         ?        ?        ?   -2.503  -0.016  -0.532  C5   05M  73  
05M  C6   C37  C  0  1  N  N  N         ?        ?        ?   -3.852  -0.121   0.182  C6   05M  74  
05M  H8   H8   H  0  1  N  N  N         ?        ?        ?   -7.922   0.067   0.730  H8   05M  75  
05M  H15  H15  H  0  1  N  N  N         ?        ?        ?    2.508   1.005  -0.437  H15  05M  76  
05M  H35  H35  H  0  1  N  N  N         ?        ?        ?    2.556  -0.766  -0.607  H35  05M  77  
05M  H36  H36  H  0  1  N  N  N         ?        ?        ?    1.050  -0.995   1.350  H36  05M  78  
05M  H37  H37  H  0  1  N  N  N         ?        ?        ?    1.002   0.776   1.520  H37  05M  79  
05M  H38  H38  H  0  1  N  N  N         ?        ?        ?    0.030   0.968  -0.753  H38  05M  80  
05M  H39  H39  H  0  1  N  N  N         ?        ?        ?    0.078  -0.803  -0.923  H39  05M  81  
05M  H40  H40  H  0  1  N  N  N         ?        ?        ?   -1.428  -1.032   1.034  H40  05M  82  
05M  H41  H41  H  0  1  N  N  N         ?        ?        ?   -1.476   0.739   1.204  H41  05M  83  
05M  H42  H42  H  0  1  N  N  N         ?        ?        ?   -2.449   0.931  -1.069  H42  05M  84  
05M  H43  H43  H  0  1  N  N  N         ?        ?        ?   -2.401  -0.840  -1.239  H43  05M  85  
05M  H44  H44  H  0  1  N  N  N         ?        ?        ?   -3.954   0.702   0.888  H44  05M  86  
05M  H45  H45  H  0  1  N  N  N         ?        ?        ?   -3.906  -1.069   0.718  H45  05M  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
05M  C33  C32  DOUB  Y  N   1  
05M  C33  C34  SING  Y  N   2  
05M  C32  C31  SING  Y  N   3  
05M  C34  C35  DOUB  Y  N   4  
05M  C31  C25  DOUB  Y  N   5  
05M  C27  C28  DOUB  Y  N   6  
05M  C27  C26  SING  Y  N   7  
05M  C28  C29  SING  Y  N   8  
05M  C35  C25  SING  Y  N   9  
05M  C26  C24  DOUB  Y  N  10  
05M  C25  P22  SING  N  N  11  
05M  C29  C30  DOUB  Y  N  12  
05M  C24  C30  SING  Y  N  13  
05M  C24  P22  SING  N  N  14  
05M  P22  C21  SING  N  N  15  
05M  P22  C23  SING  N  N  16  
05M  C40  C23  DOUB  Y  N  17  
05M  C40  C39  SING  Y  N  18  
05M  C23  C36  SING  Y  N  19  
05M  C14  C13  SING  N  N  20  
05M  C10  C05  SING  N  N  21  
05M  O09  C04  DOUB  N  N  22  
05M  C39  C38  DOUB  Y  N  23  
05M  C36  C37  DOUB  Y  N  24  
05M  C42  O08  SING  N  N  25  
05M  C05  C04  SING  N  N  26  
05M  C05  C06  DOUB  N  N  27  
05M  C04  C03  SING  N  N  28  
05M  C13  C12  SING  N  N  29  
05M  C12  C06  SING  N  N  30  
05M  C06  C01  SING  N  N  31  
05M  C38  C37  SING  Y  N  32  
05M  C03  O08  SING  N  N  33  
05M  C03  C02  DOUB  N  N  34  
05M  C01  C02  SING  N  N  35  
05M  C01  O11  DOUB  N  N  36  
05M  C02  O07  SING  N  N  37  
05M  O07  C41  SING  N  N  38  
05M  C10  H1   SING  N  N  39  
05M  C10  H2   SING  N  N  40  
05M  C10  H3   SING  N  N  41  
05M  C13  H4   SING  N  N  42  
05M  C13  H5   SING  N  N  43  
05M  C21  H6   SING  N  N  44  
05M  C21  H7   SING  N  N  45  
05M  C26  H9   SING  N  N  46  
05M  C28  H10  SING  N  N  47  
05M  C12  H11  SING  N  N  48  
05M  C12  H12  SING  N  N  49  
05M  C14  H13  SING  N  N  50  
05M  C14  H14  SING  N  N  51  
05M  C27  H16  SING  N  N  52  
05M  C29  H17  SING  N  N  53  
05M  C30  H18  SING  N  N  54  
05M  C31  H19  SING  N  N  55  
05M  C32  H20  SING  N  N  56  
05M  C33  H21  SING  N  N  57  
05M  C34  H22  SING  N  N  58  
05M  C35  H23  SING  N  N  59  
05M  C36  H24  SING  N  N  60  
05M  C37  H25  SING  N  N  61  
05M  C38  H26  SING  N  N  62  
05M  C39  H27  SING  N  N  63  
05M  C40  H28  SING  N  N  64  
05M  C41  H29  SING  N  N  65  
05M  C41  H30  SING  N  N  66  
05M  C41  H31  SING  N  N  67  
05M  C42  H32  SING  N  N  68  
05M  C42  H33  SING  N  N  69  
05M  C42  H34  SING  N  N  70  
05M  C14  C1   SING  N  N  71  
05M  C1   C2   SING  N  N  72  
05M  C2   C3   SING  N  N  73  
05M  C3   C4   SING  N  N  74  
05M  C4   C5   SING  N  N  75  
05M  C5   C6   SING  N  N  76  
05M  C21  C6   SING  N  N  77  
05M  P22  H8   SING  N  N  78  
05M  C1   H15  SING  N  N  79  
05M  C1   H35  SING  N  N  80  
05M  C2   H36  SING  N  N  81  
05M  C2   H37  SING  N  N  82  
05M  C3   H38  SING  N  N  83  
05M  C3   H39  SING  N  N  84  
05M  C4   H40  SING  N  N  85  
05M  C4   H41  SING  N  N  86  
05M  C5   H42  SING  N  N  87  
05M  C5   H43  SING  N  N  88  
05M  C6   H44  SING  N  N  89  
05M  C6   H45  SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
05M  InChI             InChI                 1.03   "InChI=1S/C37H45O4P/c1-29-33(35(39)37(41-3)36(40-2)34(29)38)27-19-8-6-4-5-7-9-20-28-42(30-21-13-10-14-22-30,31-23-15-11-16-24-31)32-25-17-12-18-26-32/h10-18,21-26,42H,4-9,19-20,27-28H2,1-3H3"  
05M  InChIKey          InChI                 1.03   BIPKQWZPPRRUAP-UHFFFAOYSA-N  
05M  SMILES_CANONICAL  CACTVS                3.385  "COC1=C(OC)C(=O)C(=C(C)C1=O)CCCCCCCCCC[PH](c2ccccc2)(c3ccccc3)c4ccccc4"  
05M  SMILES            CACTVS                3.385  "COC1=C(OC)C(=O)C(=C(C)C1=O)CCCCCCCCCC[PH](c2ccccc2)(c3ccccc3)c4ccccc4"  
05M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1=C(C(=O)C(=C(C1=O)OC)OC)CCCCCCCCCCP(c2ccccc2)(c3ccccc3)c4ccccc4"  
05M  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1=C(C(=O)C(=C(C1=O)OC)OC)CCCCCCCCCCP(c2ccccc2)(c3ccccc3)c4ccccc4"  
#
_pdbx_chem_comp_identifier.comp_id          05M
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2,3-dimethoxy-5-methyl-6-[10-(triphenyl-$l^{5}-phosphanyl)decyl]cyclohexa-2,5-diene-1,4-dione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
05M  "Create component"  2021-06-02  PDBJ  
05M  "Initial release"   2022-01-05  RCSB  
##
