data_YIL
# 
_chem_comp.id                                    YIL 
_chem_comp.name                                  "N~2~-{[3-(acetamidomethyl)phenyl]acetyl}-N-[(2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1,1-dihydroxypentan-2-yl]-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H41 N7 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        611.755 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YIL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G1V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YIL C30 C1  C 0 1 Y N N N N N -61.020 9.790  -6.228  5.119  1.516  1.592  C30 YIL 1  
YIL C10 C2  C 0 1 Y N N N N N -57.032 8.349  1.839   -3.812 -1.692 1.180  C10 YIL 2  
YIL C33 C3  C 0 1 N N N N N N -62.002 11.252 -9.631  8.062  -0.119 -0.117 C33 YIL 3  
YIL C16 C4  C 0 1 Y N N N N N -59.602 4.570  2.847   -4.980 -4.046 -2.645 C16 YIL 4  
YIL C17 C5  C 0 1 Y N N N N N -59.621 5.899  2.345   -5.185 -2.908 -1.924 C17 YIL 5  
YIL C21 C6  C 0 1 N N N N N N -55.570 13.110 -2.155  -5.089 2.987  -0.975 C21 YIL 6  
YIL C23 C7  C 0 1 N N N N N N -54.833 14.358 -4.182  -5.547 4.918  -2.429 C23 YIL 7  
YIL C20 C8  C 0 1 N N N N N N -55.934 11.650 -1.855  -4.024 2.535  0.026  C20 YIL 8  
YIL C28 C9  C 0 1 N N N N N N -59.511 9.506  -4.226  2.738  0.940  1.358  C28 YIL 9  
YIL C29 C10 C 0 1 N N N N N N -59.821 9.030  -5.634  3.874  1.104  2.335  C29 YIL 10 
YIL C31 C11 C 0 1 Y N N N N N -60.988 10.171 -7.573  5.980  0.553  1.100  C31 YIL 11 
YIL C01 C12 C 0 1 N N N N N N -62.986 7.395  -0.076  1.683  -0.200 -1.782 C01 YIL 12 
YIL C02 C13 C 0 1 N N N N N N -62.292 8.352  -1.100  1.733  -1.151 -0.585 C02 YIL 13 
YIL C03 C14 C 0 1 N N N N N N -60.745 8.237  -0.873  0.458  -0.992 0.246  C03 YIL 14 
YIL C04 C15 C 0 1 N N S N N N -59.939 9.134  -1.791  0.414  0.414  0.848  C04 YIL 15 
YIL C05 C16 C 0 1 N N N N N N -58.466 8.994  -1.411  -0.897 0.613  1.564  C05 YIL 16 
YIL C07 C17 C 0 1 N N S N N N -56.656 10.049 -0.040  -3.332 0.707  1.582  C07 YIL 17 
YIL C08 C18 C 0 1 N N N N N N -56.596 9.765  1.432   -3.766 -0.610 2.228  C08 YIL 18 
YIL C12 C19 C 0 1 Y N N N N N -58.421 6.607  2.273   -4.487 -2.691 -0.719 C12 YIL 19 
YIL C13 C20 C 0 1 Y N N N N N -57.213 6.041  2.673   -3.584 -3.668 -0.285 C13 YIL 20 
YIL C14 C21 C 0 1 Y N N N N N -57.210 4.710  3.165   -3.387 -4.825 -1.035 C14 YIL 21 
YIL C15 C22 C 0 1 Y N N N N N -58.409 4.003  3.251   -4.082 -5.010 -2.209 C15 YIL 22 
YIL C19 C23 C 0 1 N N N N N N -56.115 11.456 -0.316  -4.397 1.158  0.580  C19 YIL 23 
YIL C32 C24 C 0 1 Y N N N N N -62.073 10.837 -8.148  7.123  0.930  0.420  C32 YIL 24 
YIL C35 C25 C 0 1 N N N N N N -62.770 10.139 -11.863 8.365  -1.405 -2.164 C35 YIL 25 
YIL C36 C26 C 0 1 N N N N N N -62.806 8.975  -12.843 7.956  -1.775 -3.567 C36 YIL 26 
YIL C44 C27 C 0 1 Y N N N N N -63.189 11.152 -7.367  7.404  2.271  0.232  C44 YIL 27 
YIL C45 C28 C 0 1 Y N N N N N -63.230 10.770 -6.026  6.543  3.234  0.724  C45 YIL 28 
YIL C46 C29 C 0 1 Y N N N N N -62.144 10.092 -5.448  5.397  2.856  1.400  C46 YIL 29 
YIL C48 C30 C 0 1 N N N N N N -62.776 9.810  -0.896  1.839  -2.594 -1.084 C48 YIL 30 
YIL N06 N1  N 0 1 N N N N N N -58.037 10.015 -0.497  -2.057 0.513  0.886  N06 YIL 31 
YIL N11 N2  N 0 1 Y N N N N N -58.331 7.940  1.795   -4.552 -1.654 0.138  N11 YIL 32 
YIL N22 N3  N 0 1 N N N N N N -55.298 13.164 -3.564  -4.733 4.306  -1.506 N22 YIL 33 
YIL N24 N4  N 0 1 N N N N N N -54.611 14.299 -5.550  -6.635 4.326  -2.833 N24 YIL 34 
YIL N25 N5  N 0 1 N N N N N N -54.696 15.406 -3.490  -5.212 6.155  -2.927 N25 YIL 35 
YIL N27 N6  N 0 1 N N N N N N -60.137 8.727  -3.151  1.518  0.573  1.798  N27 YIL 36 
YIL N34 N7  N 0 1 N N N N N N -62.010 10.029 -10.600 7.664  -0.479 -1.480 N34 YIL 37 
YIL O09 O1  O 0 1 N N N N N N -55.297 9.842  1.866   -5.062 -0.453 2.807  O09 YIL 38 
YIL O26 O2  O 0 1 N N N N N N -57.723 8.114  -1.801  -0.908 0.864  2.751  O26 YIL 39 
YIL O43 O3  O 0 1 N N N N N N -63.333 11.139 -12.101 9.324  -1.941 -1.651 O43 YIL 40 
YIL O47 O4  O 0 1 N N N N N N -58.829 10.446 -3.949  2.922  1.138  0.175  O47 YIL 41 
YIL S18 S1  S 0 1 Y N N N N N -55.987 7.175  2.439   -2.876 -3.119 1.231  S18 YIL 42 
YIL H1  H1  H 0 1 N N N N N N -61.076 11.823 -9.793  9.078  0.274  -0.127 H1  YIL 43 
YIL H2  H2  H 0 1 N N N N N N -62.870 11.888 -9.860  8.020  -1.003 0.519  H2  YIL 44 
YIL H3  H3  H 0 1 N N N N N N -60.519 4.004  2.913   -5.522 -4.199 -3.566 H3  YIL 45 
YIL H4  H4  H 0 1 N N N N N N -60.547 6.353  2.025   -5.887 -2.168 -2.279 H4  YIL 46 
YIL H5  H5  H 0 1 N N N N N N -54.680 13.409 -1.581  -5.145 2.269  -1.794 H5  YIL 47 
YIL H6  H6  H 0 1 N N N N N N -56.410 13.774 -1.901  -6.056 3.046  -0.476 H6  YIL 48 
YIL H7  H7  H 0 1 N N N N N N -56.873 11.395 -2.368  -3.057 2.477  -0.473 H7  YIL 49 
YIL H8  H8  H 0 1 N N N N N N -55.129 10.992 -2.214  -3.968 3.253  0.845  H8  YIL 50 
YIL H9  H9  H 0 1 N N N N N N -60.056 7.956  -5.606  4.052  0.158  2.847  H9  YIL 51 
YIL H10 H10 H 0 1 N N N N N N -58.940 9.196  -6.271  3.616  1.870  3.066  H10 YIL 52 
YIL H11 H11 H 0 1 N N N N N N -60.117 9.949  -8.172  5.761  -0.494 1.247  H11 YIL 53 
YIL H12 H12 H 0 1 N N N N N N -62.631 6.366  -0.236  0.816  -0.436 -2.398 H12 YIL 54 
YIL H13 H13 H 0 1 N N N N N N -62.740 7.713  0.948   1.608  0.828  -1.426 H13 YIL 55 
YIL H14 H14 H 0 1 N N N N N N -64.076 7.433  -0.220  2.592  -0.313 -2.374 H14 YIL 56 
YIL H15 H15 H 0 1 N N N N N N -62.533 8.026  -2.122  2.600  -0.915 0.032  H15 YIL 57 
YIL H16 H16 H 0 1 N N N N N N -60.442 7.194  -1.049  -0.413 -1.141 -0.392 H16 YIL 58 
YIL H17 H17 H 0 1 N N N N N N -60.523 8.513  0.169   0.452  -1.730 1.048  H17 YIL 59 
YIL H18 H18 H 0 1 N N N N N N -60.253 10.179 -1.650  0.510  1.153  0.053  H18 YIL 60 
YIL H19 H19 H 0 1 N N N N N N -56.051 9.311  -0.587  -3.213 1.468  2.353  H19 YIL 61 
YIL H21 H21 H 0 1 N N N N N N -56.284 4.247  3.471   -2.688 -5.576 -0.697 H21 YIL 62 
YIL H22 H22 H 0 1 N N N N N N -58.405 2.995  3.640   -3.930 -5.907 -2.791 H22 YIL 63 
YIL H23 H23 H 0 1 N N N N N N -55.144 11.581 0.186   -5.364 1.217  1.079  H23 YIL 64 
YIL H24 H24 H 0 1 N N N N N N -56.825 12.204 0.067   -4.453 0.441  -0.238 H24 YIL 65 
YIL H25 H25 H 0 1 N N N N N N -63.408 9.252  -13.721 7.998  -0.891 -4.203 H25 YIL 66 
YIL H26 H26 H 0 1 N N N N N N -61.782 8.734  -13.163 8.635  -2.534 -3.955 H26 YIL 67 
YIL H27 H27 H 0 1 N N N N N N -63.254 8.097  -12.354 6.939  -2.168 -3.557 H27 YIL 68 
YIL H28 H28 H 0 1 N N N N N N -64.018 11.690 -7.801  8.297  2.566  -0.299 H28 YIL 69 
YIL H29 H29 H 0 1 N N N N N N -64.101 10.997 -5.429  6.763  4.281  0.578  H29 YIL 70 
YIL H30 H30 H 0 1 N N N N N N -62.175 9.805  -4.407  4.722  3.608  1.780  H30 YIL 71 
YIL H31 H31 H 0 1 N N N N N N -63.862 9.863  -1.061  0.972  -2.830 -1.700 H31 YIL 72 
YIL H32 H32 H 0 1 N N N N N N -62.545 10.133 0.130   2.747  -2.707 -1.676 H32 YIL 73 
YIL H33 H33 H 0 1 N N N N N N -62.264 10.470 -1.612  1.874  -3.272 -0.231 H33 YIL 74 
YIL H34 H34 H 0 1 N N N N N N -58.687 10.703 -0.175  -2.049 0.313  -0.063 H34 YIL 75 
YIL H35 H35 H 0 1 N N N N N N -55.438 12.346 -4.122  -3.922 4.746  -1.205 H35 YIL 76 
YIL H36 H36 H 0 1 N N N N N N -54.330 15.184 -5.922  -7.209 4.758  -3.484 H36 YIL 77 
YIL H37 H37 H 0 1 N N N N N N -54.914 15.393 -2.514  -4.402 6.596  -2.626 H37 YIL 78 
YIL H38 H38 H 0 1 N N N N N N -54.370 16.249 -3.918  -5.786 6.588  -3.578 H38 YIL 79 
YIL H39 H39 H 0 1 N N N N N N -60.694 7.924  -3.364  1.371  0.415  2.743  H39 YIL 80 
YIL H40 H40 H 0 1 N N N N N N -61.513 9.192  -10.372 6.897  -0.050 -1.891 H40 YIL 81 
YIL H41 H41 H 0 1 N N N N N N -55.263 9.662  2.798   -5.749 -0.206 2.172  H41 YIL 82 
YIL O1  O5  O 0 1 N Y N N N N -57.447 10.689 2.109   -2.830 -0.973 3.246  O1  YIL 83 
YIL H20 H20 H 0 1 N Y N N N N -57.419 10.520 3.043   -1.927 -1.097 2.924  H20 YIL 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YIL C36 C35 SING N N 1  
YIL O43 C35 DOUB N N 2  
YIL C35 N34 SING N N 3  
YIL N34 C33 SING N N 4  
YIL C33 C32 SING N N 5  
YIL C32 C31 DOUB Y N 6  
YIL C32 C44 SING Y N 7  
YIL C31 C30 SING Y N 8  
YIL C44 C45 DOUB Y N 9  
YIL C30 C29 SING N N 10 
YIL C30 C46 DOUB Y N 11 
YIL C45 C46 SING Y N 12 
YIL C29 C28 SING N N 13 
YIL N24 C23 DOUB N N 14 
YIL C28 O47 DOUB N N 15 
YIL C28 N27 SING N N 16 
YIL C23 N22 SING N N 17 
YIL C23 N25 SING N N 18 
YIL N22 C21 SING N N 19 
YIL N27 C04 SING N N 20 
YIL C21 C20 SING N N 21 
YIL C20 C19 SING N N 22 
YIL O26 C05 DOUB N N 23 
YIL C04 C05 SING N N 24 
YIL C04 C03 SING N N 25 
YIL C05 N06 SING N N 26 
YIL C02 C48 SING N N 27 
YIL C02 C03 SING N N 28 
YIL C02 C01 SING N N 29 
YIL N06 C07 SING N N 30 
YIL C19 C07 SING N N 31 
YIL C07 C08 SING N N 32 
YIL C08 C10 SING N N 33 
YIL C08 O09 SING N N 34 
YIL N11 C10 DOUB Y N 35 
YIL N11 C12 SING Y N 36 
YIL C10 S18 SING Y N 37 
YIL C12 C17 DOUB Y N 38 
YIL C12 C13 SING Y N 39 
YIL C17 C16 SING Y N 40 
YIL S18 C13 SING Y N 41 
YIL C13 C14 DOUB Y N 42 
YIL C16 C15 DOUB Y N 43 
YIL C14 C15 SING Y N 44 
YIL C33 H1  SING N N 45 
YIL C33 H2  SING N N 46 
YIL C16 H3  SING N N 47 
YIL C17 H4  SING N N 48 
YIL C21 H5  SING N N 49 
YIL C21 H6  SING N N 50 
YIL C20 H7  SING N N 51 
YIL C20 H8  SING N N 52 
YIL C29 H9  SING N N 53 
YIL C29 H10 SING N N 54 
YIL C31 H11 SING N N 55 
YIL C01 H12 SING N N 56 
YIL C01 H13 SING N N 57 
YIL C01 H14 SING N N 58 
YIL C02 H15 SING N N 59 
YIL C03 H16 SING N N 60 
YIL C03 H17 SING N N 61 
YIL C04 H18 SING N N 62 
YIL C07 H19 SING N N 63 
YIL C14 H21 SING N N 64 
YIL C15 H22 SING N N 65 
YIL C19 H23 SING N N 66 
YIL C19 H24 SING N N 67 
YIL C36 H25 SING N N 68 
YIL C36 H26 SING N N 69 
YIL C36 H27 SING N N 70 
YIL C44 H28 SING N N 71 
YIL C45 H29 SING N N 72 
YIL C46 H30 SING N N 73 
YIL C48 H31 SING N N 74 
YIL C48 H32 SING N N 75 
YIL C48 H33 SING N N 76 
YIL N06 H34 SING N N 77 
YIL N22 H35 SING N N 78 
YIL N24 H36 SING N N 79 
YIL N25 H37 SING N N 80 
YIL N25 H38 SING N N 81 
YIL N27 H39 SING N N 82 
YIL N34 H40 SING N N 83 
YIL O09 H41 SING N N 84 
YIL C08 O1  SING N N 85 
YIL O1  H20 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YIL SMILES           ACDLabs              12.01 "CC(=O)NCc1cccc(c1)CC(=O)NC(CC(C)C)C(=O)NC(CCCNC(=N)N)C(O)(O)c1nc2ccccc2s1"                                                                                                                                                                                         
YIL InChI            InChI                1.06  "InChI=1S/C30H41N7O5S/c1-18(2)14-23(35-26(39)16-20-8-6-9-21(15-20)17-34-19(3)38)27(40)37-25(12-7-13-33-29(31)32)30(41,42)28-36-22-10-4-5-11-24(22)43-28/h4-6,8-11,15,18,23,25,41-42H,7,12-14,16-17H2,1-3H3,(H,34,38)(H,35,39)(H,37,40)(H4,31,32,33)/t23-,25-/m0/s1" 
YIL InChIKey         InChI                1.06  PJRWAYIGCZNXHI-ZCYQVOJMSA-N                                                                                                                                                                                                                                         
YIL SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)Cc1cccc(CNC(C)=O)c1)C(=O)N[C@@H](CCCNC(N)=N)C(O)(O)c2sc3ccccc3n2"                                                                                                                                                                                
YIL SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)Cc1cccc(CNC(C)=O)c1)C(=O)N[CH](CCCNC(N)=N)C(O)(O)c2sc3ccccc3n2"                                                                                                                                                                                   
YIL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCC[C@@H](C(c1nc2ccccc2s1)(O)O)NC(=O)[C@H](CC(C)C)NC(=O)Cc3cccc(c3)CNC(=O)C"                                                                                                                                                                          
YIL SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CCCNC(=N)N)C(c1nc2ccccc2s1)(O)O)NC(=O)Cc3cccc(c3)CNC(=O)C"                                                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YIL "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-{[3-(acetamidomethyl)phenyl]acetyl}-N-[(2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1,1-dihydroxypentan-2-yl]-L-leucinamide"                                
YIL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[2-[3-(acetamidomethyl)phenyl]ethanoylamino]-~{N}-[(2~{S})-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1,1-bis(oxidanyl)pentan-2-yl]-4-methyl-pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YIL "Create component" 2023-02-06 RCSB 
YIL "Initial release"  2024-07-10 RCSB 
YIL "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YIL 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C08 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
