data_Y2L
# 
_chem_comp.id                                    Y2L 
_chem_comp.name                                  "4-methyl-5-({2-[(5-methyl-2H-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenoxy}methyl)-2,4-dihydro-3H-1,2,4-triazol-3-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H14 F3 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-09 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        369.302 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2L C10 C1  C 0 1 Y N N N N N -12.496 4.903  45.887 -0.649 1.889  0.393  C10 Y2L 1  
Y2L C11 C2  C 0 1 Y N N N N N -12.786 6.123  45.194 -0.270 0.743  -0.290 C11 Y2L 2  
Y2L O12 O1  O 0 1 N N N N N N -13.417 7.193  45.718 1.046  0.428  -0.415 O12 Y2L 3  
Y2L C13 C3  C 0 1 N N N N N N -13.847 7.060  47.044 1.986  1.324  0.183  C13 Y2L 4  
Y2L C16 C4  C 0 1 N N N N N N -14.505 10.506 48.293 5.587  0.675  -0.028 C16 Y2L 5  
Y2L C20 C5  C 0 1 N N N N N N -12.198 9.802  47.559 4.620  2.667  1.143  C20 Y2L 6  
Y2L C23 C6  C 0 1 Y N N N N N -10.309 9.826  43.700 -1.015 -4.087 0.597  C23 Y2L 7  
Y2L C26 C7  C 0 1 N N N N N N -9.490  10.822 44.386 -1.710 -5.221 1.305  C26 Y2L 8  
Y2L C1  C8  C 0 1 N N N N N N -12.869 7.482  43.072 -0.829 -1.329 -1.588 C1  Y2L 9  
Y2L C2  C9  C 0 1 Y N N N N N -12.424 6.307  43.880 -1.237 -0.083 -0.846 C2  Y2L 10 
Y2L C3  C10 C 0 1 Y N N N N N -11.732 5.299  43.216 -2.574 0.239  -0.717 C3  Y2L 11 
Y2L C4  C11 C 0 1 Y N N N N N -11.456 4.127  43.887 -2.950 1.382  -0.036 C4  Y2L 12 
Y2L C5  C12 C 0 1 N N N N N N -10.720 3.038  43.176 -4.409 1.731  0.102  C5  Y2L 13 
Y2L F6  F1  F 0 1 N N N N N N -11.439 1.940  43.034 -4.919 1.150  1.269  F6  Y2L 14 
Y2L F7  F2  F 0 1 N N N N N N -10.298 3.378  41.947 -4.552 3.121  0.173  F7  Y2L 15 
Y2L F8  F3  F 0 1 N N N N N N -9.650  2.598  43.816 -5.112 1.245  -1.006 F8  Y2L 16 
Y2L C9  C13 C 0 1 Y N N N N N -11.832 3.906  45.213 -1.988 2.203  0.523  C9  Y2L 17 
Y2L C14 C14 C 0 1 N N N N N N -14.395 8.360  47.534 3.385  0.816  -0.056 C14 Y2L 18 
Y2L N15 N1  N 0 1 N N N N N N -13.616 9.538  47.772 4.540  1.422  0.376  N15 Y2L 19 
Y2L N17 N2  N 0 1 N N N N N N -15.736 9.841  48.321 5.091  -0.384 -0.703 N17 Y2L 20 
Y2L N18 N3  N 0 1 N N N N N N -15.688 8.556  47.869 3.695  -0.266 -0.696 N18 Y2L 21 
Y2L O19 O2  O 0 1 N N N N N N -14.221 11.641 48.633 6.764  0.914  0.174  O19 Y2L 22 
Y2L N21 N4  N 0 1 Y N N N N N -11.725 8.345  43.078 -0.641 -2.425 -0.635 N21 Y2L 23 
Y2L N22 N5  N 0 1 Y N N N N N -11.440 9.207  44.159 -1.555 -3.252 -0.256 N22 Y2L 24 
Y2L N24 N6  N 0 1 Y N N N N N -9.968  9.320  42.396 0.265  -3.737 0.724  N24 Y2L 25 
Y2L N25 N7  N 0 1 Y N N N N N -10.827 8.432  42.048 0.465  -2.722 -0.046 N25 Y2L 26 
Y2L H31 H1  H 0 1 N N N N N N -12.793 4.770  46.917 0.102  2.533  0.827  H31 Y2L 27 
Y2L H33 H2  H 0 1 N N N N N N -14.631 6.290  47.098 1.878  2.313  -0.261 H33 Y2L 28 
Y2L H32 H3  H 0 1 N N N N N N -12.997 6.762  47.675 1.800  1.384  1.255  H32 Y2L 29 
Y2L H35 H4  H 0 1 N N N N N N -11.967 10.833 47.864 4.594  2.440  2.208  H35 Y2L 30 
Y2L H37 H5  H 0 1 N N N N N N -11.600 9.100  48.159 5.550  3.182  0.904  H37 Y2L 31 
Y2L H36 H6  H 0 1 N N N N N N -11.957 9.672  46.494 3.775  3.306  0.887  H36 Y2L 32 
Y2L H40 H7  H 0 1 N N N N N N -9.917  11.028 45.378 -2.127 -4.862 2.246  H40 Y2L 33 
Y2L H38 H8  H 0 1 N N N N N N -8.466  10.438 44.501 -2.513 -5.605 0.675  H38 Y2L 34 
Y2L H39 H9  H 0 1 N N N N N N -9.470  11.750 43.795 -0.994 -6.018 1.505  H39 Y2L 35 
Y2L H28 H10 H 0 1 N N N N N N -13.127 7.179  42.047 -1.607 -1.598 -2.302 H28 Y2L 36 
Y2L H27 H11 H 0 1 N N N N N N -13.735 7.974  43.538 0.105  -1.146 -2.120 H27 Y2L 37 
Y2L H29 H12 H 0 1 N N N N N N -11.416 5.433  42.192 -3.328 -0.403 -1.150 H29 Y2L 38 
Y2L H30 H13 H 0 1 N N N N N N -11.605 2.969  45.700 -2.284 3.096  1.055  H30 Y2L 39 
Y2L H34 H14 H 0 1 N N N N N N -16.578 10.272 48.645 5.606  -1.094 -1.116 H34 Y2L 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2L C1  C2  SING N N 1  
Y2L C1  N21 SING N N 2  
Y2L C2  C3  DOUB Y N 3  
Y2L C2  C11 SING Y N 4  
Y2L C3  C4  SING Y N 5  
Y2L C4  C5  SING N N 6  
Y2L C4  C9  DOUB Y N 7  
Y2L C5  F6  SING N N 8  
Y2L C5  F7  SING N N 9  
Y2L C5  F8  SING N N 10 
Y2L C9  C10 SING Y N 11 
Y2L C10 C11 DOUB Y N 12 
Y2L C11 O12 SING N N 13 
Y2L O12 C13 SING N N 14 
Y2L C13 C14 SING N N 15 
Y2L C14 N15 SING N N 16 
Y2L C14 N18 DOUB N N 17 
Y2L N15 C16 SING N N 18 
Y2L N15 C20 SING N N 19 
Y2L C16 N17 SING N N 20 
Y2L C16 O19 DOUB N N 21 
Y2L N17 N18 SING N N 22 
Y2L N21 N22 SING Y N 23 
Y2L N21 N25 SING Y N 24 
Y2L N22 C23 DOUB Y N 25 
Y2L C23 N24 SING Y N 26 
Y2L C23 C26 SING N N 27 
Y2L N24 N25 DOUB Y N 28 
Y2L C10 H31 SING N N 29 
Y2L C13 H33 SING N N 30 
Y2L C13 H32 SING N N 31 
Y2L C20 H35 SING N N 32 
Y2L C20 H37 SING N N 33 
Y2L C20 H36 SING N N 34 
Y2L C26 H40 SING N N 35 
Y2L C26 H38 SING N N 36 
Y2L C26 H39 SING N N 37 
Y2L C1  H28 SING N N 38 
Y2L C1  H27 SING N N 39 
Y2L C3  H29 SING N N 40 
Y2L C9  H30 SING N N 41 
Y2L N17 H34 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2L SMILES           ACDLabs              12.01 "FC(F)(F)c1cc(Cn2nc(C)nn2)c(cc1)OCC1=NNC(=O)N1C"                                                                                 
Y2L InChI            InChI                1.06  "InChI=1S/C14H14F3N7O2/c1-8-18-22-24(21-8)6-9-5-10(14(15,16)17)3-4-11(9)26-7-12-19-20-13(25)23(12)2/h3-5H,6-7H2,1-2H3,(H,20,25)" 
Y2L InChIKey         InChI                1.06  KCJQOLUHLQCUST-UHFFFAOYSA-N                                                                                                      
Y2L SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)NN=C1COc2ccc(cc2Cn3nnc(C)n3)C(F)(F)F"                                                                                   
Y2L SMILES           CACTVS               3.385 "CN1C(=O)NN=C1COc2ccc(cc2Cn3nnc(C)n3)C(F)(F)F"                                                                                   
Y2L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnn(n1)Cc2cc(ccc2OCC3=NNC(=O)N3C)C(F)(F)F"                                                                                   
Y2L SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1nnn(n1)Cc2cc(ccc2OCC3=NNC(=O)N3C)C(F)(F)F"                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2L "SYSTEMATIC NAME" ACDLabs              12.01 "4-methyl-5-({2-[(5-methyl-2H-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenoxy}methyl)-2,4-dihydro-3H-1,2,4-triazol-3-one" 
Y2L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-methyl-3-[[2-[(5-methyl-1,2,3,4-tetrazol-2-yl)methyl]-4-(trifluoromethyl)phenoxy]methyl]-1~{H}-1,2,4-triazol-5-one"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2L "Create component" 2023-06-09 RCSB 
Y2L "Initial release"  2024-12-18 RCSB 
# 
