data_XRL
# 
_chem_comp.id                                    XRL 
_chem_comp.name                                  "4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H21 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-06 
_chem_comp.pdbx_modified_date                    2023-01-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        435.481 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XRL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FCE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XRL C10 C1  C 0 1 Y N N 11.455 64.693 -18.841 3.588  1.510  0.732  C10 XRL 1  
XRL C13 C2  C 0 1 Y N N 11.852 61.981 -18.547 3.216  -0.878 -0.646 C13 XRL 2  
XRL C15 C3  C 0 1 N N N 12.431 65.298 -16.652 1.712  0.987  2.294  C15 XRL 3  
XRL C20 C4  C 0 1 Y N N 6.548  65.868 -15.078 -6.263 1.762  0.976  C20 XRL 4  
XRL C21 C5  C 0 1 Y N N 7.033  66.242 -16.327 -6.557 1.591  -0.380 C21 XRL 5  
XRL C22 C6  C 0 1 Y N N 8.145  65.613 -16.862 -5.550 1.194  -1.265 C22 XRL 6  
XRL C24 C7  C 0 1 N N N 6.391  67.292 -17.092 -7.886 1.820  -0.861 C24 XRL 7  
XRL C28 C8  C 0 1 N N N 15.032 61.124 -15.961 0.930  -3.801 1.202  C28 XRL 8  
XRL C11 C9  C 0 1 Y N N 11.055 63.841 -19.858 4.409  1.188  -0.355 C11 XRL 9  
XRL C12 C10 C 0 1 Y N N 11.262 62.478 -19.704 4.214  -0.017 -1.042 C12 XRL 10 
XRL C14 C11 C 0 1 Y N N 12.260 62.842 -17.507 2.399  -0.551 0.432  C14 XRL 11 
XRL C16 C12 C 0 1 N N N 12.034 60.477 -18.469 3.001  -2.172 -1.388 C16 XRL 12 
XRL C18 C13 C 0 1 Y N N 8.295  64.222 -14.888 -3.986 1.141  0.552  C18 XRL 13 
XRL C19 C14 C 0 1 Y N N 7.176  64.859 -14.363 -4.984 1.541  1.435  C19 XRL 14 
XRL C23 C15 C 0 1 Y N N 8.766  64.611 -16.144 -4.274 0.974  -0.799 C23 XRL 15 
XRL C25 C16 C 0 1 N N N 14.951 60.572 -14.545 1.050  -3.918 -0.294 C25 XRL 16 
XRL C27 C17 C 0 1 N N N 10.451 64.443 -21.055 5.473  2.111  -0.775 C27 XRL 17 
XRL C29 C18 C 0 1 N N N 14.301 62.418 -16.264 1.672  -2.559 1.698  C29 XRL 18 
XRL C01 C19 C 0 1 Y N N 12.591 61.399 -14.016 -0.473 -2.100 -0.555 C01 XRL 19 
XRL C02 C20 C 0 1 Y N N 12.149 62.111 -15.149 0.079  -1.225 0.391  C02 XRL 20 
XRL C04 C21 C 0 1 Y N N 10.135 62.605 -14.079 -1.931 -0.114 0.491  C04 XRL 21 
XRL C06 C22 C 0 1 Y N N 11.691 61.368 -12.948 -1.793 -1.932 -0.926 C06 XRL 22 
XRL C09 C23 C 0 1 Y N N 12.052 64.230 -17.676 2.593  0.643  1.121  C09 XRL 23 
XRL C30 C24 C 0 1 N N N 10.056 65.719 -21.162 5.660  3.272  -0.112 C30 XRL 24 
XRL C31 C25 C 0 1 N N N 9.503  66.245 -22.358 6.696  4.172  -0.521 C31 XRL 25 
XRL N03 N1  N 0 1 Y N N 10.929 62.689 -15.149 -0.670 -0.247 0.878  N03 XRL 26 
XRL N05 N2  N 0 1 Y N N 10.471 61.950 -12.957 -2.487 -0.937 -0.385 N05 XRL 27 
XRL N07 N3  N 0 1 N N N 13.824 60.759 -13.838 0.322  -3.114 -1.102 N07 XRL 28 
XRL N08 N4  N 0 1 N N N 8.877  63.213 -14.105 -2.693 0.918  1.020  N08 XRL 29 
XRL N17 N5  N 0 1 N N N 12.856 62.310 -16.341 1.383  -1.421 0.823  N17 XRL 30 
XRL N32 N6  N 0 1 N N N 9.081  66.681 -23.338 7.518  4.885  -0.845 N32 XRL 31 
XRL N33 N7  N 0 1 N N N 5.889  68.127 -17.709 -8.941 2.002  -1.242 N33 XRL 32 
XRL O26 O1  O 0 1 N N N 15.903 59.960 -14.080 1.802  -4.737 -0.777 O26 XRL 33 
XRL H1  H1  H 0 1 N N N 11.297 65.755 -18.959 3.738  2.436  1.267  H1  XRL 34 
XRL H2  H2  H 0 1 N N N 11.587 65.465 -15.966 0.841  1.541  1.944  H2  XRL 35 
XRL H3  H3  H 0 1 N N N 13.308 64.962 -16.080 1.386  0.069  2.785  H3  XRL 36 
XRL H4  H4  H 0 1 N N N 12.671 66.237 -17.173 2.272  1.598  3.002  H4  XRL 37 
XRL H5  H5  H 0 1 N N N 5.682  66.364 -14.665 -7.038 2.073  1.662  H5  XRL 38 
XRL H6  H6  H 0 1 N N N 8.522  65.904 -17.831 -5.774 1.060  -2.313 H6  XRL 39 
XRL H7  H7  H 0 1 N N N 14.628 60.355 -16.636 -0.123 -3.725 1.475  H7  XRL 40 
XRL H8  H8  H 0 1 N N N 16.096 61.289 -16.188 1.361  -4.686 1.669  H8  XRL 41 
XRL H9  H9  H 0 1 N N N 10.963 61.798 -20.488 4.845  -0.270 -1.881 H9  XRL 42 
XRL H10 H10 H 0 1 N N N 13.013 60.203 -18.890 2.203  -2.044 -2.119 H10 XRL 43 
XRL H11 H11 H 0 1 N N N 11.984 60.156 -17.418 3.921  -2.455 -1.900 H11 XRL 44 
XRL H12 H12 H 0 1 N N N 11.237 59.981 -19.043 2.724  -2.955 -0.681 H12 XRL 45 
XRL H13 H13 H 0 1 N N N 6.795  64.567 -13.396 -4.756 1.677  2.482  H13 XRL 46 
XRL H14 H14 H 0 1 N N N 9.632  64.119 -16.561 -3.495 0.668  -1.483 H14 XRL 47 
XRL H15 H15 H 0 1 N N N 10.315 63.806 -21.917 6.105  1.861  -1.614 H15 XRL 48 
XRL H16 H16 H 0 1 N N N 14.666 62.796 -17.230 1.349  -2.327 2.713  H16 XRL 49 
XRL H17 H17 H 0 1 N N N 14.546 63.140 -15.472 2.744  -2.754 1.695  H17 XRL 50 
XRL H18 H18 H 0 1 N N N 11.991 60.843 -12.053 -2.252 -2.597 -1.642 H18 XRL 51 
XRL H19 H19 H 0 1 N N N 10.162 66.370 -20.307 5.027  3.522  0.727  H19 XRL 52 
XRL H20 H20 H 0 1 N N N 13.881 60.322 -12.940 0.351  -3.240 -2.063 H20 XRL 53 
XRL H21 H21 H 0 1 N N N 8.254  62.849 -13.413 -2.324 1.485  1.716  H21 XRL 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XRL N32 C31 TRIP N N 1  
XRL C31 C30 SING N N 2  
XRL C30 C27 DOUB N E 3  
XRL C27 C11 SING N N 4  
XRL C11 C12 DOUB Y N 5  
XRL C11 C10 SING Y N 6  
XRL C12 C13 SING Y N 7  
XRL C10 C09 DOUB Y N 8  
XRL C13 C16 SING N N 9  
XRL C13 C14 DOUB Y N 10 
XRL N33 C24 TRIP N N 11 
XRL C09 C14 SING Y N 12 
XRL C09 C15 SING N N 13 
XRL C14 N17 SING N N 14 
XRL C24 C21 SING N N 15 
XRL C22 C21 DOUB Y N 16 
XRL C22 C23 SING Y N 17 
XRL N17 C29 SING N N 18 
XRL N17 C02 SING N N 19 
XRL C21 C20 SING Y N 20 
XRL C29 C28 SING N N 21 
XRL C23 C18 DOUB Y N 22 
XRL C28 C25 SING N N 23 
XRL C02 N03 DOUB Y N 24 
XRL C02 C01 SING Y N 25 
XRL N03 C04 SING Y N 26 
XRL C20 C19 DOUB Y N 27 
XRL C18 C19 SING Y N 28 
XRL C18 N08 SING N N 29 
XRL C25 O26 DOUB N N 30 
XRL C25 N07 SING N N 31 
XRL N08 C04 SING N N 32 
XRL C04 N05 DOUB Y N 33 
XRL C01 N07 SING N N 34 
XRL C01 C06 DOUB Y N 35 
XRL N05 C06 SING Y N 36 
XRL C10 H1  SING N N 37 
XRL C15 H2  SING N N 38 
XRL C15 H3  SING N N 39 
XRL C15 H4  SING N N 40 
XRL C20 H5  SING N N 41 
XRL C22 H6  SING N N 42 
XRL C28 H7  SING N N 43 
XRL C28 H8  SING N N 44 
XRL C12 H9  SING N N 45 
XRL C16 H10 SING N N 46 
XRL C16 H11 SING N N 47 
XRL C16 H12 SING N N 48 
XRL C19 H13 SING N N 49 
XRL C23 H14 SING N N 50 
XRL C27 H15 SING N N 51 
XRL C29 H16 SING N N 52 
XRL C29 H17 SING N N 53 
XRL C06 H18 SING N N 54 
XRL C30 H19 SING N N 55 
XRL N07 H20 SING N N 56 
XRL N08 H21 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XRL SMILES           ACDLabs              12.01 "N#Cc1ccc(cc1)Nc1nc2c(NC(=O)CCN2c2c(C)cc(\C=C\C#N)cc2C)cn1"                                                                                                                         
XRL InChI            InChI                1.06  "InChI=1S/C25H21N7O/c1-16-12-19(4-3-10-26)13-17(2)23(16)32-11-9-22(33)30-21-15-28-25(31-24(21)32)29-20-7-5-18(14-27)6-8-20/h3-8,12-13,15H,9,11H2,1-2H3,(H,30,33)(H,28,29,31)/b4-3+" 
XRL InChIKey         InChI                1.06  CXONFCILERVPJH-ONEGZZNKSA-N                                                                                                                                                         
XRL SMILES_CANONICAL CACTVS               3.385 "Cc1cc(/C=C/C#N)cc(C)c1N2CCC(=O)Nc3cnc(Nc4ccc(cc4)C#N)nc23"                                                                                                                         
XRL SMILES           CACTVS               3.385 "Cc1cc(C=CC#N)cc(C)c1N2CCC(=O)Nc3cnc(Nc4ccc(cc4)C#N)nc23"                                                                                                                           
XRL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1N2CCC(=O)Nc3c2nc(nc3)Nc4ccc(cc4)C#N)C)/C=C/C#N"                                                                                                                         
XRL SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1N2CCC(=O)Nc3c2nc(nc3)Nc4ccc(cc4)C#N)C)C=CC#N"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XRL "SYSTEMATIC NAME" ACDLabs              12.01 "4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]benzonitrile"                  
XRL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[9-[4-[(~{E})-2-cyanoethenyl]-2,6-dimethyl-phenyl]-6-oxidanylidene-7,8-dihydro-5~{H}-pyrimido[4,5-b][1,4]diazepin-2-yl]amino]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XRL "Create component" 2022-12-06 RCSB 
XRL "Initial release"  2023-02-01 RCSB 
# 
