data_XOL
# 
_chem_comp.id                                    XOL 
_chem_comp.name                                  "(2M)-2-[2-(piperazin-1-yl)phenyl]-N-(1,3-thiazol-2-yl)-1H-benzimidazole-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H20 N6 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-03 
_chem_comp.pdbx_modified_date                    2023-05-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        404.488 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XOL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FBU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XOL C01  C1  C 0 1 Y N N 9.755  11.761 52.704 1.094  -2.073 0.003  C01  XOL 1  
XOL C02  C2  C 0 1 Y N N 10.360 10.630 53.241 1.659  -3.347 0.014  C02  XOL 2  
XOL C03  C3  C 0 1 Y N N 11.390 9.991  52.555 0.853  -4.469 0.019  C03  XOL 3  
XOL C04  C4  C 0 1 Y N N 11.799 10.467 51.325 -0.524 -4.348 0.014  C04  XOL 4  
XOL C06  C5  C 0 1 Y N N 10.197 12.276 51.462 -0.312 -1.938 0.003  C06  XOL 5  
XOL C10  C6  C 0 1 Y N N 10.434 14.377 48.508 -3.569 -0.400 -0.006 C10  XOL 6  
XOL C11  C7  C 0 1 Y N N 10.460 14.054 47.175 -3.408 0.993  0.004  C11  XOL 7  
XOL C13  C8  C 0 1 Y N N 10.308 16.385 46.609 -5.792 1.259  -0.004 C13  XOL 8  
XOL C14  C9  C 0 1 Y N N 10.295 16.700 47.947 -5.954 -0.116 -0.020 C14  XOL 9  
XOL C17  C10 C 0 1 N N N 9.309  11.844 46.971 -1.887 2.324  -1.211 C17  XOL 10 
XOL C18  C11 C 0 1 N N N 9.555  10.350 46.784 -0.450 2.852  -1.198 C18  XOL 11 
XOL C21  C12 C 0 1 N N N 11.069 12.307 45.449 -1.930 2.381  1.209  C21  XOL 12 
XOL C22  C13 C 0 1 N N N 8.653  12.465 53.475 1.955  -0.878 -0.003 C22  XOL 13 
XOL C05  C14 C 0 1 Y N N 11.200 11.621 50.782 -1.114 -3.093 0.003  C05  XOL 14 
XOL C08  C15 C 0 1 Y N N 10.536 13.323 49.597 -2.386 -1.284 -0.001 C08  XOL 15 
XOL C12  C16 C 0 1 Y N N 10.388 15.049 46.216 -4.528 1.814  0.005  C12  XOL 16 
XOL C15  C17 C 0 1 Y N N 10.366 15.703 48.894 -4.853 -0.947 -0.015 C15  XOL 17 
XOL C20  C18 C 0 1 N N N 11.389 10.816 45.318 -0.493 2.910  1.221  C20  XOL 18 
XOL C24  C19 C 0 1 Y N N 7.193  14.540 53.547 4.107  0.113  -0.003 C24  XOL 19 
XOL C26  C20 C 0 1 Y N N 5.863  16.440 53.816 4.593  2.290  -0.007 C26  XOL 20 
XOL C27  C21 C 0 1 Y N N 5.547  15.633 54.943 5.853  1.850  -0.010 C27  XOL 21 
XOL N07  N1  N 0 1 Y N N 9.801  13.330 50.692 -1.137 -0.877 -0.006 N07  XOL 22 
XOL N09  N2  N 0 1 Y N N 11.390 12.305 49.619 -2.424 -2.651 -0.005 N09  XOL 23 
XOL N16  N3  N 0 1 N N N 10.538 12.666 46.805 -2.133 1.550  0.014  N16  XOL 24 
XOL N19  N4  N 0 1 N N N 10.273 9.993  45.620 -0.247 3.684  -0.004 N19  XOL 25 
XOL N23  N5  N 0 1 N N N 8.187  13.714 52.932 3.296  -1.013 0.002  N23  XOL 26 
XOL N25  N6  N 0 1 Y N N 6.874  15.770 53.000 3.679  1.337  -0.007 N25  XOL 27 
XOL O29  O1  O 0 1 N N N 8.202  12.000 54.470 1.455  0.231  -0.012 O29  XOL 28 
XOL S28  S1  S 0 1 Y N N 6.399  14.260 54.951 5.817  0.089  0.002  S28  XOL 29 
XOL H021 H1  H 0 0 N N N 10.030 10.245 54.195 2.734  -3.457 0.017  H021 XOL 30 
XOL H031 H2  H 0 0 N N N 11.869 9.124  52.985 1.303  -5.450 0.028  H031 XOL 31 
XOL H041 H3  H 0 0 N N N 12.578 9.955  50.779 -1.142 -5.233 0.018  H041 XOL 32 
XOL H131 H4  H 0 0 N N N 10.257 17.167 45.866 -6.660 1.902  -0.007 H131 XOL 33 
XOL H141 H5  H 0 0 N N N 10.229 17.733 48.256 -6.947 -0.541 -0.035 H141 XOL 34 
XOL H171 H6  H 0 0 N N N 8.566  12.172 46.229 -2.582 3.162  -1.257 H171 XOL 35 
XOL H172 H7  H 0 0 N N N 8.912  12.009 47.984 -2.031 1.684  -2.081 H172 XOL 36 
XOL H181 H8  H 0 0 N N N 8.577  9.848  46.747 0.245  2.013  -1.180 H181 XOL 37 
XOL H182 H9  H 0 0 N N N 10.120 9.988  47.655 -0.275 3.450  -2.092 H182 XOL 38 
XOL H211 H10 H 0 0 N N N 11.989 12.882 45.267 -2.106 1.782  2.102  H211 XOL 39 
XOL H212 H11 H 0 0 N N N 10.315 12.573 44.694 -2.626 3.220  1.190  H212 XOL 40 
XOL H121 H12 H 0 0 N N N 10.394 14.792 45.167 -4.410 2.887  0.013  H121 XOL 41 
XOL H151 H13 H 0 0 N N N 10.369 15.958 49.943 -4.985 -2.019 -0.020 H151 XOL 42 
XOL H201 H14 H 0 0 N N N 11.708 10.613 44.285 -0.349 3.550  2.091  H201 XOL 43 
XOL H202 H15 H 0 0 N N N 12.208 10.569 46.010 0.203  2.072  1.267  H202 XOL 44 
XOL H261 H16 H 0 0 N N N 5.423  17.402 53.596 4.341  3.340  -0.013 H261 XOL 45 
XOL H271 H17 H 0 0 N N N 4.826  15.904 55.700 6.740  2.467  -0.019 H271 XOL 46 
XOL H09  H19 H 0 1 N N N 12.055 12.080 48.907 -3.220 -3.206 -0.002 H09  XOL 47 
XOL H192 H20 H 0 0 N N N 9.643  10.031 44.845 -0.829 4.508  -0.034 H192 XOL 48 
XOL H231 H22 H 0 0 N N N 8.584  14.025 52.068 3.694  -1.898 0.010  H231 XOL 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XOL C20 C21  SING N N 1  
XOL C20 N19  SING N N 2  
XOL C21 N16  SING N N 3  
XOL N19 C18  SING N N 4  
XOL C12 C13  DOUB Y N 5  
XOL C12 C11  SING Y N 6  
XOL C13 C14  SING Y N 7  
XOL C18 C17  SING N N 8  
XOL N16 C17  SING N N 9  
XOL N16 C11  SING N N 10 
XOL C11 C10  DOUB Y N 11 
XOL C14 C15  DOUB Y N 12 
XOL C10 C15  SING Y N 13 
XOL C10 C08  SING N N 14 
XOL C08 N09  SING Y N 15 
XOL C08 N07  DOUB Y N 16 
XOL N09 C05  SING Y N 17 
XOL N07 C06  SING Y N 18 
XOL C05 C04  DOUB Y N 19 
XOL C05 C06  SING Y N 20 
XOL C04 C03  SING Y N 21 
XOL C06 C01  DOUB Y N 22 
XOL C03 C02  DOUB Y N 23 
XOL C01 C02  SING Y N 24 
XOL C01 C22  SING N N 25 
XOL N23 C22  SING N N 26 
XOL N23 C24  SING N N 27 
XOL N25 C24  DOUB Y N 28 
XOL N25 C26  SING Y N 29 
XOL C22 O29  DOUB N N 30 
XOL C24 S28  SING Y N 31 
XOL C26 C27  DOUB Y N 32 
XOL C27 S28  SING Y N 33 
XOL C02 H021 SING N N 34 
XOL C03 H031 SING N N 35 
XOL C04 H041 SING N N 36 
XOL C13 H131 SING N N 37 
XOL C14 H141 SING N N 38 
XOL C17 H171 SING N N 39 
XOL C17 H172 SING N N 40 
XOL C18 H181 SING N N 41 
XOL C18 H182 SING N N 42 
XOL C21 H211 SING N N 43 
XOL C21 H212 SING N N 44 
XOL C12 H121 SING N N 45 
XOL C15 H151 SING N N 46 
XOL C20 H201 SING N N 47 
XOL C20 H202 SING N N 48 
XOL C26 H261 SING N N 49 
XOL C27 H271 SING N N 50 
XOL N09 H09  SING N N 51 
XOL N19 H192 SING N N 52 
XOL N23 H231 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XOL SMILES           ACDLabs              12.01 "O=C(Nc1nccs1)c1cccc2[NH]c(nc12)c1ccccc1N1CCNCC1"                                                                                                                    
XOL InChI            InChI                1.06  "InChI=1S/C21H20N6OS/c28-20(26-21-23-10-13-29-21)15-5-3-6-16-18(15)25-19(24-16)14-4-1-2-7-17(14)27-11-8-22-9-12-27/h1-7,10,13,22H,8-9,11-12H2,(H,24,25)(H,23,26,28)" 
XOL InChIKey         InChI                1.06  IXJIKFKXRZPAPB-UHFFFAOYSA-N                                                                                                                                          
XOL SMILES_CANONICAL CACTVS               3.385 "O=C(Nc1sccn1)c2cccc3[nH]c(nc23)c4ccccc4N5CCNCC5"                                                                                                                    
XOL SMILES           CACTVS               3.385 "O=C(Nc1sccn1)c2cccc3[nH]c(nc23)c4ccccc4N5CCNCC5"                                                                                                                    
XOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2[nH]c3cccc(c3n2)C(=O)Nc4nccs4)N5CCNCC5"                                                                                                                
XOL SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2[nH]c3cccc(c3n2)C(=O)Nc4nccs4)N5CCNCC5"                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XOL "SYSTEMATIC NAME" ACDLabs              12.01 "(2M)-2-[2-(piperazin-1-yl)phenyl]-N-(1,3-thiazol-2-yl)-1H-benzimidazole-4-carboxamide" 
XOL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-(2-piperazin-1-ylphenyl)-~{N}-(1,3-thiazol-2-yl)-1~{H}-benzimidazole-4-carboxamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XOL "Create component" 2022-12-03 RCSB 
XOL "Initial release"  2023-05-31 RCSB 
# 
