data_XDL
#

_chem_comp.id                                   XDL
_chem_comp.name                                 "XYLOSE-DERIVED ISOFAGOMINE LACTAM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H9 N O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(3S)-3-HYDROXYPIPERIDIN-2-ONE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-02-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       115.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XDL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1OD8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XDL  N1    N1    N  0  1  N  N  N   8.932  26.122   0.731  -1.309  -0.156  -0.696  N1    XDL   1  
XDL  C2    C2    C  0  1  N  N  N   9.800  26.510   1.668  -0.769   0.105   0.493  C2    XDL   2  
XDL  C3    C3    C  0  1  N  N  S   9.995  25.613   2.920   0.696   0.352   0.703  C3    XDL   3  
XDL  O3    O3    O  0  1  N  N  N  10.126  26.427   4.079   1.128  -0.328   1.883  O3    XDL   4  
XDL  C4    C4    C  0  1  N  N  N   8.909  24.535   3.080   1.488  -0.164  -0.500  C4    XDL   5  
XDL  C5    C5    C  0  1  N  N  N   8.714  23.869   1.727   0.829   0.368  -1.778  C5    XDL   6  
XDL  C6    C6    C  0  1  N  N  N   8.212  24.861   0.694  -0.544  -0.285  -1.929  C6    XDL   7  
XDL  O2    O2    O  0  1  N  N  N  10.502  27.629   1.572  -1.501   0.149   1.459  O2    XDL   8  
XDL  H1    H1    H  0  1  N  N  N   8.762  26.758  -0.015  -2.271  -0.269  -0.743  H1    XDL   9  
XDL  H3    H3    H  0  1  N  N  N  10.927  25.046   2.778   0.870   1.422   0.819  H3    XDL  10  
XDL  HA    HA    H  0  1  N  N  N   9.227  26.666   4.419   0.609   0.026   2.617  HA    XDL  11  
XDL  H4C1  1H4C  H  0  0  N  N  N   9.229  23.789   3.822   2.517   0.190  -0.442  H4C1  XDL  12  
XDL  H4C2  2H4C  H  0  0  N  N  N   7.967  24.986   3.426   1.475  -1.254  -0.507  H4C2  XDL  13  
XDL  H5C1  1H5C  H  0  0  N  N  N   7.980  23.056   1.830   0.714   1.449  -1.706  H5C1  XDL  14  
XDL  H5C2  2H5C  H  0  0  N  N  N   9.684  23.476   1.389   1.449   0.120  -2.639  H5C2  XDL  15  
XDL  H6C1  1H6C  H  0  0  N  N  N   7.147  25.058   0.884  -1.086   0.199  -2.742  H6C1  XDL  16  
XDL  H6C2  2H6C  H  0  0  N  N  N   8.372  24.416  -0.299  -0.417  -1.341  -2.166  H6C2  XDL  17  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XDL  N1  C2    SING  N  N   1  
XDL  N1  C6    SING  N  N   2  
XDL  N1  H1    SING  N  N   3  
XDL  C2  C3    SING  N  N   4  
XDL  C2  O2    DOUB  N  N   5  
XDL  C3  O3    SING  N  N   6  
XDL  C3  C4    SING  N  N   7  
XDL  C3  H3    SING  N  N   8  
XDL  O3  HA    SING  N  N   9  
XDL  C4  C5    SING  N  N  10  
XDL  C4  H4C1  SING  N  N  11  
XDL  C4  H4C2  SING  N  N  12  
XDL  C5  C6    SING  N  N  13  
XDL  C5  H5C1  SING  N  N  14  
XDL  C5  H5C2  SING  N  N  15  
XDL  C6  H6C1  SING  N  N  16  
XDL  C6  H6C2  SING  N  N  17  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XDL  SMILES            ACDLabs               10.04  O=C1NCCCC1O  
XDL  SMILES_CANONICAL  CACTVS                3.341  O[C@H]1CCCNC1=O  
XDL  SMILES            CACTVS                3.341  O[CH]1CCCNC1=O  
XDL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1C[C@@H](C(=O)NC1)O"  
XDL  SMILES            "OpenEye OEToolkits"  1.5.0  "C1CC(C(=O)NC1)O"  
XDL  InChI             InChI                 1.03   "InChI=1S/C5H9NO2/c7-4-2-1-3-6-5(4)8/h4,7H,1-3H2,(H,6,8)/t4-/m0/s1"  
XDL  InChIKey          InChI                 1.03   RYKLZUPYJFFNRR-BYPYZUCNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XDL  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3S)-3-hydroxypiperidin-2-one"  
XDL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(3S)-3-hydroxypiperidin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XDL  "Create component"   2003-02-14  RCSB  
XDL  "Modify descriptor"  2011-06-04  RCSB  
XDL  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XDL
_pdbx_chem_comp_synonyms.name        "(3S)-3-HYDROXYPIPERIDIN-2-ONE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
