data_TDL
#

_chem_comp.id                                   TDL
_chem_comp.name                                 "3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H23 N4 O10 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-LACTYLTHIAMIN DIPHOSPHATE"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2005-12-01
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       513.376
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TDL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2EZ8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TDL  O1B     O1B   O  0  1  N  N  N  83.082  59.127   0.917  -7.658  -1.051   1.385  O1B     TDL   1  
TDL  PB      PB    P  0  1  N  N  N  84.265  60.053   1.026  -7.608  -0.721  -0.057  PB      TDL   2  
TDL  O2B     O2B   O  0  1  N  N  N  85.126  59.830   2.246  -8.187  -1.957  -0.911  O2B     TDL   3  
TDL  O3B     O3B   O  0  1  N  N  N  85.013  60.260  -0.269  -8.500   0.590  -0.339  O3B     TDL   4  
TDL  O3A     O3A   O  0  1  N  N  N  83.639  61.517   1.430  -6.084  -0.436  -0.491  O3A     TDL   5  
TDL  PA      PA    P  0  1  N  N  R  83.520  62.877   0.554  -4.848   0.328   0.202  PA      TDL   6  
TDL  O1A     O1A   O  0  1  N  N  N  84.738  63.087  -0.282  -4.757  -0.070   1.625  O1A     TDL   7  
TDL  O2A     O2A   O  0  1  N  N  N  83.153  63.999   1.505  -5.078   1.919   0.104  O2A     TDL   8  
TDL  O7      O7    O  0  1  N  N  N  82.261  62.581  -0.370  -3.482  -0.064  -0.554  O7      TDL   9  
TDL  C7      C7    C  0  1  N  N  N  80.960  62.607   0.218  -2.195   0.370  -0.110  C7      TDL  10  
TDL  C6      C6    C  0  1  N  N  N  80.075  62.005  -0.863  -1.120  -0.179  -1.050  C6      TDL  11  
TDL  C5      C5    C  0  1  Y  N  N  78.573  62.109  -0.725   0.238   0.278  -0.583  C5      TDL  12  
TDL  S1      S1    S  0  1  Y  N  N  77.801  61.124   0.482   1.058   1.759  -1.072  S1      TDL  13  
TDL  C4      C4    C  0  1  Y  N  N  77.606  62.843  -1.447   1.030  -0.365   0.280  C4      TDL  14  
TDL  CM4     CM4   C  0  1  N  N  N  78.035  63.793  -2.552   0.648  -1.677   0.916  CM4     TDL  15  
TDL  N3      N3    N  1  1  Y  N  N  76.304  62.646  -1.050   2.172   0.243   0.530  N3      TDL  16  
TDL  C2      C2    C  0  1  Y  N  N  76.224  61.728  -0.006   2.387   1.363  -0.072  C2      TDL  17  
TDL  CLA     CLA   C  0  1  N  N  S  74.900  61.167   0.531   3.628   2.203   0.085  CLA     TDL  18  
TDL  OL1     OL1   O  0  1  N  N  N  73.885  62.144   0.712   3.884   2.420   1.474  OL1     TDL  19  
TDL  CLB     CLB   C  0  1  N  N  N  75.028  60.362   1.841   3.424   3.550  -0.612  CLB     TDL  20  
TDL  CLC     CLC   C  0  1  N  N  N  74.357  60.183  -0.580   4.801   1.488  -0.536  CLC     TDL  21  
TDL  OL2     OL2   O  0  1  N  N  N  74.349  58.913  -0.415   6.039   1.687  -0.056  OL2     TDL  22  
TDL  OL3     OL3   O  0  1  N  N  N  73.887  60.597  -1.705   4.627   0.737  -1.466  OL3     TDL  23  
TDL  "C7'"   C7*   C  0  1  N  N  N  75.185  63.405  -1.689   3.155  -0.328   1.455  "C7'"   TDL  24  
TDL  "C5'"   C5*   C  0  1  Y  N  N  75.232  64.880  -1.178   4.194  -1.092   0.675  "C5'"   TDL  25  
TDL  "C6'"   C6*   C  0  1  Y  N  N  75.473  65.928  -2.101   3.887  -1.658  -0.547  "C6'"   TDL  26  
TDL  "N1'"   N1*   N  0  1  Y  N  N  75.531  67.226  -1.719   4.826  -2.323  -1.205  "N1'"   TDL  27  
TDL  "C2'"   C2*   C  0  1  Y  N  N  75.371  67.559  -0.417   6.041  -2.450  -0.711  "C2'"   TDL  28  
TDL  CM2     CM2   C  0  1  N  N  N  75.446  68.995   0.049   7.075  -3.215  -1.497  CM2     TDL  29  
TDL  "N3'"   N3*   N  0  1  Y  N  N  75.142  66.608   0.503   6.378  -1.926   0.450  "N3'"   TDL  30  
TDL  "C4'"   C4*   C  0  1  Y  N  N  75.068  65.282   0.170   5.492  -1.240   1.167  "C4'"   TDL  31  
TDL  "N4'"   N4*   N  0  1  N  N  N  74.816  64.429   1.209   5.851  -0.686   2.385  "N4'"   TDL  32  
TDL  H2B     H2B   H  0  1  N  N  N  86.038  59.783   1.986  -9.103  -2.185  -0.701  H2B     TDL  33  
TDL  H3B     H3B   H  0  1  N  N  N  84.395  60.303  -0.989  -8.514   0.865  -1.266  H3B     TDL  34  
TDL  H2A     H2A   H  0  1  N  N  N  83.076  63.655   2.387  -5.147   2.251  -0.801  H2A     TDL  35  
TDL  H71     1H7   H  0  1  N  N  N  80.645  63.618   0.515  -2.158   1.459  -0.113  H71     TDL  36  
TDL  H72     2H7   H  0  1  N  N  N  80.923  62.017   1.146  -2.016   0.002   0.900  H72     TDL  37  
TDL  H61     1H6   H  0  1  N  N  N  80.276  60.925  -0.805  -1.157  -1.269  -1.048  H61     TDL  38  
TDL  H62     2H6   H  0  1  N  N  N  80.337  62.518  -1.800  -1.299   0.188  -2.061  H62     TDL  39  
TDL  HM41    1HM4  H  0  0  N  N  N  77.277  63.794  -3.349   0.995  -2.498   0.289  HM41    TDL  40  
TDL  HM42    2HM4  H  0  0  N  N  N  79.000  63.464  -2.964   1.109  -1.751   1.901  HM42    TDL  41  
TDL  HM43    3HM4  H  0  0  N  N  N  78.139  64.809  -2.143  -0.436  -1.729   1.017  HM43    TDL  42  
TDL  HL1     HL1   H  0  1  N  N  N  73.816  62.362   1.634   4.399   1.717   1.894  HL1     TDL  43  
TDL  HLB1    1HLB  H  0  0  N  N  N  74.163  60.574   2.487   2.576   4.067  -0.163  HLB1    TDL  44  
TDL  HLB2    2HLB  H  0  0  N  N  N  75.954  60.652   2.360   4.322   4.157  -0.498  HLB2    TDL  45  
TDL  HLB3    3HLB  H  0  0  N  N  N  75.058  59.287   1.610   3.230   3.385  -1.672  HLB3    TDL  46  
TDL  HL2     HL2   H  0  1  N  N  N  73.982  58.495  -1.186   6.760   1.212  -0.492  HL2     TDL  47  
TDL  "H7'1"  1H7*  H  0  0  N  N  N  74.220  62.946  -1.426   3.637   0.474   2.013  "H7'1"  TDL  48  
TDL  "H7'2"  2H7*  H  0  0  N  N  N  75.299  63.386  -2.783   2.653  -1.003   2.148  "H7'2"  TDL  49  
TDL  "H6'"   H6*   H  0  1  N  N  N  75.615  65.684  -3.143   2.895  -1.561  -0.961  "H6'"   TDL  50  
TDL  HM21    1HM2  H  0  0  N  N  N  74.567  69.545  -0.317   7.607  -2.533  -2.159  HM21    TDL  51  
TDL  HM22    2HM2  H  0  0  N  N  N  76.361  69.461  -0.345   7.782  -3.680  -0.810  HM22    TDL  52  
TDL  HM23    3HM2  H  0  0  N  N  N  75.464  69.024   1.148   6.583  -3.987  -2.089  HM23    TDL  53  
TDL  "H4'1"  1H4*  H  0  0  N  N  N  75.557  64.490   1.878   5.167  -0.359   2.989  "H4'1"  TDL  54  
TDL  "H4'2"  2H4*  H  0  0  N  N  N  74.755  63.492   0.864   6.787  -0.625   2.633  "H4'2"  TDL  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TDL  O1B    PB      DOUB  N  N   1  
TDL  PB     O2B     SING  N  N   2  
TDL  PB     O3B     SING  N  N   3  
TDL  PB     O3A     SING  N  N   4  
TDL  O2B    H2B     SING  N  N   5  
TDL  O3B    H3B     SING  N  N   6  
TDL  O3A    PA      SING  N  N   7  
TDL  PA     O1A     DOUB  N  N   8  
TDL  PA     O2A     SING  N  N   9  
TDL  PA     O7      SING  N  N  10  
TDL  O2A    H2A     SING  N  N  11  
TDL  O7     C7      SING  N  N  12  
TDL  C7     C6      SING  N  N  13  
TDL  C7     H71     SING  N  N  14  
TDL  C7     H72     SING  N  N  15  
TDL  C6     C5      SING  N  N  16  
TDL  C6     H61     SING  N  N  17  
TDL  C6     H62     SING  N  N  18  
TDL  C5     S1      SING  Y  N  19  
TDL  C5     C4      DOUB  Y  N  20  
TDL  S1     C2      SING  Y  N  21  
TDL  C4     CM4     SING  N  N  22  
TDL  C4     N3      SING  Y  N  23  
TDL  CM4    HM41    SING  N  N  24  
TDL  CM4    HM42    SING  N  N  25  
TDL  CM4    HM43    SING  N  N  26  
TDL  N3     C2      DOUB  Y  N  27  
TDL  N3     "C7'"   SING  N  N  28  
TDL  C2     CLA     SING  N  N  29  
TDL  CLA    OL1     SING  N  N  30  
TDL  CLA    CLB     SING  N  N  31  
TDL  CLA    CLC     SING  N  N  32  
TDL  OL1    HL1     SING  N  N  33  
TDL  CLB    HLB1    SING  N  N  34  
TDL  CLB    HLB2    SING  N  N  35  
TDL  CLB    HLB3    SING  N  N  36  
TDL  CLC    OL2     SING  N  N  37  
TDL  CLC    OL3     DOUB  N  N  38  
TDL  OL2    HL2     SING  N  N  39  
TDL  "C7'"  "C5'"   SING  N  N  40  
TDL  "C7'"  "H7'1"  SING  N  N  41  
TDL  "C7'"  "H7'2"  SING  N  N  42  
TDL  "C5'"  "C6'"   SING  Y  N  43  
TDL  "C5'"  "C4'"   DOUB  Y  N  44  
TDL  "C6'"  "N1'"   DOUB  Y  N  45  
TDL  "C6'"  "H6'"   SING  N  N  46  
TDL  "N1'"  "C2'"   SING  Y  N  47  
TDL  "C2'"  CM2     SING  N  N  48  
TDL  "C2'"  "N3'"   DOUB  Y  N  49  
TDL  CM2    HM21    SING  N  N  50  
TDL  CM2    HM22    SING  N  N  51  
TDL  CM2    HM23    SING  N  N  52  
TDL  "N3'"  "C4'"   SING  Y  N  53  
TDL  "C4'"  "N4'"   SING  N  N  54  
TDL  "N4'"  "H4'1"  SING  N  N  55  
TDL  "N4'"  "H4'2"  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TDL  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OCCc1sc([n+](c1C)Cc2cnc(nc2N)C)C(O)(C(=O)O)C"  
TDL  InChI             InChI                 1.03   "InChI=1S/C15H22N4O10P2S/c1-8-11(4-5-28-31(26,27)29-30(23,24)25)32-13(15(3,22)14(20)21)19(8)7-10-6-17-9(2)18-12(10)16/h6,22H,4-5,7H2,1-3H3,(H5-,16,17,18,20,21,23,24,25,26,27)/p+1/t15-/m1/s1"  
TDL  InChIKey          InChI                 1.03   TVDSMGSBVYONNB-OAHLLOKOSA-O  
TDL  SMILES_CANONICAL  CACTVS                3.385  "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C@@](C)(O)C(O)=O)c(N)n1"  
TDL  SMILES            CACTVS                3.385  "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C](C)(O)C(O)=O)c(N)n1"  
TDL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.5  "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@](C)(C(=O)O)O)CCO[P@@](=O)(O)OP(=O)(O)O"  
TDL  SMILES            "OpenEye OEToolkits"  1.7.5  "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(C)(C(=O)O)O)CCOP(=O)(O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TDL  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1S)-1-carboxy-1-hydroxyethyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium"  
TDL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-5-[2-(hydroxy-phosphonooxy-phosphoryl)oxyethyl]-4-methyl-1,3-thiazol-3-ium-2-yl]-2-hydroxy-propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TDL  "Create component"    2005-12-01  PDBJ  
TDL  "Modify descriptor"   2011-06-04  RCSB  
TDL  "Modify descriptor"   2012-01-05  RCSB  
TDL  "Modify coordinates"  2012-01-05  RCSB  
TDL  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TDL
_pdbx_chem_comp_synonyms.name        "2-LACTYLTHIAMIN DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
