data_S7L
# 
_chem_comp.id                                    S7L 
_chem_comp.name                                  "1-(phenylmethyl)-4-[1-(phenylmethyl)pyridin-1-ium-4-yl]pyridin-1-ium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H22 N2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2023-04-11 
_chem_comp.pdbx_modified_date                    2024-04-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        338.445 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S7L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ISH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S7L C10 C1  C 0 1 Y N N N N N 16.046 -22.093 0.650  -1.460 1.238  -1.197 C10 S7L 1  
S7L C13 C2  C 0 1 Y N N N N N 17.896 -21.952 4.311  2.843  1.247  1.147  C13 S7L 2  
S7L C15 C3  C 0 1 Y N N N N N 19.705 -23.700 5.877  5.454  -0.168 -0.003 C15 S7L 3  
S7L C17 C4  C 0 1 Y N N N N N 20.936 -23.048 5.816  5.685  -0.826 -1.197 C17 S7L 4  
S7L C20 C5  C 0 1 Y N N N N N 13.808 -22.009 -4.471 -5.682 -0.824 1.198  C20 S7L 5  
S7L C21 C6  C 0 1 Y N N N N N 22.072 -23.662 5.297  6.152  -2.127 -1.190 C21 S7L 6  
S7L C22 C7  C 0 1 Y N N N N N 16.490 -22.462 -4.762 -6.164 -2.112 -1.200 C22 S7L 7  
S7L C24 C8  C 0 1 Y N N N N N 14.403 -21.699 -5.681 -6.155 -2.124 1.194  C24 S7L 8  
S7L C26 C9  C 0 1 Y N N N N N 15.757 -21.926 -5.813 -6.396 -2.767 -0.005 C26 S7L 9  
S7L C03 C10 C 0 1 Y N N N N N 16.155 -22.714 2.963  0.744  1.242  -0.002 C03 S7L 10 
S7L C04 C11 C 0 1 Y N N N N N 15.415 -22.711 1.661  -0.740 1.242  0.000  C04 S7L 11 
S7L C05 C12 C 0 1 N N N N N N 18.421 -23.008 6.433  4.945  1.250  -0.010 C05 S7L 12 
S7L C06 C13 C 0 1 N N N N N N 13.701 -22.848 -2.122 -4.942 1.249  0.008  C06 S7L 13 
S7L C07 C14 C 0 1 Y N N N N N 15.888 -23.708 3.841  1.459  1.238  -1.203 C07 S7L 14 
S7L C08 C15 C 0 1 Y N N N N N 14.288 -23.444 1.466  -1.456 1.247  1.201  C08 S7L 15 
S7L C09 C16 C 0 1 Y N N N N N 17.182 -21.865 3.141  1.464  1.247  1.195  C09 S7L 16 
S7L C11 C17 C 0 1 Y N N N N N 16.614 -23.790 5.009  2.839  1.234  -1.160 C11 S7L 17 
S7L C12 C18 C 0 1 Y N N N N N 13.712 -23.465 0.212  -2.835 1.247  1.158  C12 S7L 18 
S7L C14 C19 C 0 1 Y N N N N N 15.459 -22.123 -0.588 -2.840 1.244  -1.150 C14 S7L 19 
S7L C16 C20 C 0 1 Y N N N N N 14.519 -22.540 -3.399 -5.451 -0.169 0.003  C16 S7L 20 
S7L C18 C21 C 0 1 Y N N N N N 15.879 -22.782 -3.561 -5.686 -0.815 -1.196 C18 S7L 21 
S7L C19 C22 C 0 1 Y N N N N N 19.657 -24.996 5.369  5.684  -0.814 1.197  C19 S7L 22 
S7L C23 C23 C 0 1 Y N N N N N 20.787 -25.608 4.848  6.151  -2.115 1.204  C23 S7L 23 
S7L C25 C24 C 0 1 Y N N N N N 21.998 -24.946 4.807  6.387  -2.771 0.010  C25 S7L 24 
S7L N01 N1  N 1 1 Y N N N N N 17.599 -22.895 5.237  3.480  1.243  -0.008 N01 S7L 25 
S7L N02 N2  N 1 1 Y N N N N N 14.315 -22.807 -0.803 -3.477 1.242  0.005  N02 S7L 26 
S7L H1  H1  H 0 1 N N N N N N 16.987 -21.588 0.807  -0.945 1.234  -2.147 H1  S7L 27 
S7L H2  H2  H 0 1 N N N N N N 18.704 -21.260 4.495  3.408  1.255  2.068  H2  S7L 28 
S7L H3  H3  H 0 1 N N N N N N 21.010 -22.035 6.183  5.501  -0.323 -2.135 H3  S7L 29 
S7L H4  H4  H 0 1 N N N N N N 12.749 -21.832 -4.354 -5.498 -0.320 2.135  H4  S7L 30 
S7L H5  H5  H 0 1 N N N N N N 23.012 -23.131 5.279  6.332  -2.641 -2.123 H5  S7L 31 
S7L H6  H6  H 0 1 N N N N N N 17.550 -22.631 -4.883 -6.348 -2.617 -2.137 H6  S7L 32 
S7L H7  H7  H 0 1 N N N N N N 13.825 -21.292 -6.497 -6.335 -2.636 2.127  H7  S7L 33 
S7L H8  H8  H 0 1 N N N N N N 16.252 -21.685 -6.742 -6.765 -3.782 -0.009 H8  S7L 34 
S7L H9  H9  H 0 1 N N N N N N 18.651 -22.019 6.856  5.308  1.771  0.876  H9  S7L 35 
S7L H10 H10 H 0 1 N N N N N N 17.931 -23.629 7.198  5.304  1.760  -0.904 H10 S7L 36 
S7L H11 H11 H 0 1 N N N N N N 12.871 -22.126 -2.102 -5.305 1.769  -0.879 H11 S7L 37 
S7L H12 H12 H 0 1 N N N N N N 13.299 -23.864 -2.247 -5.301 1.761  0.901  H12 S7L 38 
S7L H13 H13 H 0 1 N N N N N N 15.113 -24.430 3.628  0.940  1.235  -2.150 H13 S7L 39 
S7L H14 H14 H 0 1 N N N N N N 13.849 -24.002 2.280  -0.937 1.250  2.148  H14 S7L 40 
S7L H15 H15 H 0 1 N N N N N N 17.438 -21.136 2.386  0.948  1.250  2.144  H15 S7L 41 
S7L H16 H16 H 0 1 N N N N N N 16.398 -24.561 5.734  3.400  1.231  -2.082 H16 S7L 42 
S7L H17 H17 H 0 1 N N N N N N 12.790 -24.001 0.044  -3.397 1.251  2.080  H17 S7L 43 
S7L H18 H18 H 0 1 N N N N N N 15.920 -21.590 -1.406 -3.405 1.241  -2.070 H18 S7L 44 
S7L H19 H19 H 0 1 N N N N N N 16.454 -23.216 -2.757 -5.505 -0.303 -2.130 H19 S7L 45 
S7L H20 H20 H 0 1 N N N N N N 18.721 -25.535 5.381  5.499  -0.302 2.130  H20 S7L 46 
S7L H21 H21 H 0 1 N N N N N N 20.719 -26.617 4.469  6.332  -2.619 2.142  H21 S7L 47 
S7L H22 H22 H 0 1 N N N N N N 22.873 -25.428 4.397  6.752  -3.787 0.015  H22 S7L 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S7L C26 C24 DOUB Y N 1  
S7L C26 C22 SING Y N 2  
S7L C24 C20 SING Y N 3  
S7L C22 C18 DOUB Y N 4  
S7L C20 C16 DOUB Y N 5  
S7L C18 C16 SING Y N 6  
S7L C16 C06 SING N N 7  
S7L C06 N02 SING N N 8  
S7L N02 C14 DOUB Y N 9  
S7L N02 C12 SING Y N 10 
S7L C14 C10 SING Y N 11 
S7L C12 C08 DOUB Y N 12 
S7L C10 C04 DOUB Y N 13 
S7L C08 C04 SING Y N 14 
S7L C04 C03 SING N N 15 
S7L C03 C09 DOUB Y N 16 
S7L C03 C07 SING Y N 17 
S7L C09 C13 SING Y N 18 
S7L C07 C11 DOUB Y N 19 
S7L C13 N01 DOUB Y N 20 
S7L C25 C23 DOUB Y N 21 
S7L C25 C21 SING Y N 22 
S7L C23 C19 SING Y N 23 
S7L C11 N01 SING Y N 24 
S7L N01 C05 SING N N 25 
S7L C21 C17 DOUB Y N 26 
S7L C19 C15 DOUB Y N 27 
S7L C17 C15 SING Y N 28 
S7L C15 C05 SING N N 29 
S7L C10 H1  SING N N 30 
S7L C13 H2  SING N N 31 
S7L C17 H3  SING N N 32 
S7L C20 H4  SING N N 33 
S7L C21 H5  SING N N 34 
S7L C22 H6  SING N N 35 
S7L C24 H7  SING N N 36 
S7L C26 H8  SING N N 37 
S7L C05 H9  SING N N 38 
S7L C05 H10 SING N N 39 
S7L C06 H11 SING N N 40 
S7L C06 H12 SING N N 41 
S7L C07 H13 SING N N 42 
S7L C08 H14 SING N N 43 
S7L C09 H15 SING N N 44 
S7L C11 H16 SING N N 45 
S7L C12 H17 SING N N 46 
S7L C14 H18 SING N N 47 
S7L C18 H19 SING N N 48 
S7L C19 H20 SING N N 49 
S7L C23 H21 SING N N 50 
S7L C25 H22 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S7L InChI            InChI                1.06  "InChI=1S/C24H22N2/c1-3-7-21(8-4-1)19-25-15-11-23(12-16-25)24-13-17-26(18-14-24)20-22-9-5-2-6-10-22/h1-18H,19-20H2/q+2" 
S7L InChIKey         InChI                1.06  LUAZZOXZPVVGSO-UHFFFAOYSA-N                                                                                             
S7L SMILES_CANONICAL CACTVS               3.385 "C(c1ccccc1)[n+]2ccc(cc2)c3cc[n+](Cc4ccccc4)cc3"                                                                        
S7L SMILES           CACTVS               3.385 "C(c1ccccc1)[n+]2ccc(cc2)c3cc[n+](Cc4ccccc4)cc3"                                                                        
S7L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[n+]2ccc(cc2)c3cc[n+](cc3)Cc4ccccc4"                                                                        
S7L SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[n+]2ccc(cc2)c3cc[n+](cc3)Cc4ccccc4"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           S7L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-(phenylmethyl)-4-[1-(phenylmethyl)pyridin-1-ium-4-yl]pyridin-1-ium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S7L "Create component" 2023-04-11 PDBJ 
S7L "Initial release"  2024-04-17 RCSB 
# 
