data_S4L
# 
_chem_comp.id                                    S4L 
_chem_comp.name                                  "(1S,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H35 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.615 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S4L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TJ0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S4L C4  C1  C 0 1 N N S N N N 8.512  2.150  19.765 3.091  0.896  -0.932 C4  S4L 1  
S4L C5  C2  C 0 1 N N N N N N 8.023  1.345  18.565 4.297  0.961  0.007  C5  S4L 2  
S4L C6  C3  C 0 1 N N S N N N 8.386  -0.148 18.699 3.978  1.886  1.183  C6  S4L 3  
S4L C7  C4  C 0 1 N N N N N N 9.895  -0.429 18.631 3.785  3.340  0.692  C7  S4L 4  
S4L C8  C5  C 0 1 N N N N N N 10.122 -1.506 17.558 4.411  4.149  1.849  C8  S4L 5  
S4L C10 C6  C 0 1 N N N N N N 7.853  -0.976 17.532 5.156  1.964  2.130  C10 S4L 6  
S4L C12 C7  C 0 1 N N S N N N 8.202  3.659  19.566 3.455  0.082  -2.175 C12 S4L 7  
S4L C16 C8  C 0 1 N N N N N N 7.558  1.505  25.738 -1.457 -2.303 0.763  C16 S4L 8  
S4L C18 C9  C 0 1 N N N N N N 7.060  2.473  28.040 -2.541 -4.484 1.321  C18 S4L 9  
S4L C19 C10 C 0 1 N N N N N N 5.574  2.152  27.852 -2.295 -4.226 2.809  C19 S4L 10 
S4L C20 C11 C 0 1 N N N N N N 5.354  0.975  26.916 -2.310 -2.720 3.074  C20 S4L 11 
S4L N22 N1  N 0 1 N N N N N N 8.425  -0.631 23.721 -1.714 0.366  -0.464 N22 S4L 12 
S4L C23 C12 C 0 1 N N N N N N 8.279  -1.728 23.048 -2.841 0.343  0.275  C23 S4L 13 
S4L C25 C13 C 0 1 N N N N N N 9.051  -4.002 22.654 -5.174 0.728  0.602  C25 S4L 14 
S4L C26 C14 C 0 1 Y N N N N N 10.182 -3.925 21.576 -6.367 1.255  -0.152 C26 S4L 15 
S4L C27 C15 C 0 1 Y N N N N N 10.334 -4.821 20.517 -6.674 2.603  -0.105 C27 S4L 16 
S4L C28 C16 C 0 1 Y N N N N N 11.360 -4.713 19.582 -7.766 3.088  -0.800 C28 S4L 17 
S4L C31 C17 C 0 1 Y N N N N N 11.122 -2.897 21.643 -7.153 0.393  -0.894 C31 S4L 18 
S4L C14 C18 C 0 1 N N S N N N 7.950  0.695  23.341 -0.453 -0.111 0.108  C14 S4L 19 
S4L C15 C19 C 0 1 N N N N N N 8.254  1.756  24.379 -0.358 -1.629 -0.060 C15 S4L 20 
S4L C17 C20 C 0 1 N N N N N N 7.757  2.683  26.699 -1.442 -3.810 0.497  C17 S4L 21 
S4L C2  C21 C 0 1 N N N N N N 8.621  1.165  21.974 0.702  0.546  -0.602 C2  S4L 22 
S4L C21 C22 C 0 1 N N N N N N 6.037  1.230  25.573 -1.211 -2.046 2.251  C21 S4L 23 
S4L C29 C23 C 0 1 Y N N N N N 12.282 -3.668 19.686 -8.551 2.225  -1.543 C29 S4L 24 
S4L C30 C24 C 0 1 Y N N N N N 12.154 -2.753 20.736 -8.247 0.877  -1.585 C30 S4L 25 
S4L N3  N2  N 0 1 N N N N N N 7.919  1.699  21.000 1.968  0.257  -0.241 N3  S4L 26 
S4L N9  N3  N 0 1 N N N N N N 8.813  -1.696 16.948 5.380  3.245  2.480  N9  S4L 27 
S4L O1  O1  O 0 1 N N N N N N 9.816  1.036  21.854 0.492  1.336  -1.498 O1  S4L 28 
S4L O11 O2  O 0 1 N N N N N N 6.703  -0.969 17.214 5.802  1.013  2.514  O11 S4L 29 
S4L O13 O3  O 0 1 N N N N N N 8.706  4.301  18.671 4.622  0.638  -2.784 O13 S4L 30 
S4L O24 O4  O 0 1 N N N N N N 8.843  -2.831 23.512 -4.000 0.782  -0.251 O24 S4L 31 
S4L O32 O5  O 0 1 N N N N N N 7.640  -1.737 21.997 -2.811 -0.073 1.416  O32 S4L 32 
S4L H1  H1  H 0 1 N N N N N N 9.605  2.038  19.828 2.807  1.906  -1.230 H1  S4L 33 
S4L H2  H2  H 0 1 N N N N N N 8.489  1.745  17.652 4.520  -0.038 0.381  H2  S4L 34 
S4L H3  H3  H 0 1 N N N N N N 6.930  1.442  18.491 5.159  1.348  -0.536 H3  S4L 35 
S4L H4  H4  H 0 1 N N N N N N 7.982  -0.539 19.644 3.088  1.540  1.709  H4  S4L 36 
S4L H5  H5  H 0 1 N N N N N N 10.253 -0.790 19.606 4.324  3.511  -0.240 H5  S4L 37 
S4L H6  H6  H 0 1 N N N N N N 10.435 0.490  18.360 2.727  3.576  0.578  H6  S4L 38 
S4L H7  H7  H 0 1 N N N N N N 10.477 -2.441 18.015 4.917  5.033  1.461  H7  S4L 39 
S4L H8  H8  H 0 1 N N N N N N 7.216  3.948  19.959 2.627  0.109  -2.883 H8  S4L 40 
S4L H9  H9  H 0 1 N N N N N N 8.014  0.613  26.192 -2.427 -1.894 0.479  H9  S4L 41 
S4L H10 H10 H 0 1 N N N N N N 7.543  1.637  28.568 -2.530 -5.558 1.131  H10 S4L 42 
S4L H11 H11 H 0 1 N N N N N N 7.155  3.390  28.640 -3.511 -4.075 1.037  H11 S4L 43 
S4L H12 H12 H 0 1 N N N N N N 5.071  3.036  27.433 -3.078 -4.707 3.395  H12 S4L 44 
S4L H13 H13 H 0 1 N N N N N N 5.137  1.911  28.832 -1.326 -4.636 3.093  H13 S4L 45 
S4L H14 H14 H 0 1 N N N N N N 4.275  0.837  26.754 -3.280 -2.311 2.790  H14 S4L 46 
S4L H15 H15 H 0 1 N N N N N N 5.775  0.066  27.371 -2.135 -2.536 4.134  H15 S4L 47 
S4L H16 H16 H 0 1 N N N N N N 8.914  -0.700 24.591 -1.738 0.698  -1.375 H16 S4L 48 
S4L H17 H17 H 0 1 N N N N N N 8.106  -4.193 22.125 -5.006 1.338  1.490  H17 S4L 49 
S4L H18 H18 H 0 1 N N N N N N 9.282  -4.853 23.311 -5.359 -0.304 0.900  H18 S4L 50 
S4L H19 H19 H 0 1 N N N N N N 9.627  -5.631 20.419 -6.060 3.276  0.475  H19 S4L 51 
S4L H20 H20 H 0 1 N N N N N N 11.443 -5.433 18.781 -8.005 4.140  -0.764 H20 S4L 52 
S4L H21 H21 H 0 1 N N N N N N 11.039 -2.177 22.444 -6.911 -0.659 -0.934 H21 S4L 53 
S4L H22 H22 H 0 1 N N N N N N 6.862  0.660  23.183 -0.418 0.139  1.169  H22 S4L 54 
S4L H23 H23 H 0 1 N N N N N N 9.341  1.781  24.544 0.617  -1.973 0.285  H23 S4L 55 
S4L H24 H24 H 0 1 N N N N N N 7.920  2.729  23.991 -0.483 -1.886 -1.112 H24 S4L 56 
S4L H25 H25 H 0 1 N N N N N N 8.834  2.812  26.879 -1.618 -3.994 -0.563 H25 S4L 57 
S4L H26 H26 H 0 1 N N N N N N 7.352  3.592  26.230 -0.473 -4.219 0.781  H26 S4L 58 
S4L H27 H27 H 0 1 N N N N N N 5.568  2.103  25.096 -0.242 -2.455 2.535  H27 S4L 59 
S4L H28 H28 H 0 1 N N N N N N 5.903  0.346  24.933 -1.222 -0.972 2.440  H28 S4L 60 
S4L H29 H29 H 0 1 N N N N N N 13.081 -3.568 18.966 -9.404 2.604  -2.086 H29 S4L 61 
S4L H30 H30 H 0 1 N N N N N N 12.857 -1.939 20.837 -8.861 0.204  -2.165 H30 S4L 62 
S4L H31 H31 H 0 1 N N N N N N 6.931  1.797  21.120 2.135  -0.375 0.476  H31 S4L 63 
S4L S1  S1  S 0 1 N Y N N N N ?      ?      ?      3.784  -1.637 -1.696 S1  S4L 64 
S4L O3  O6  O 0 1 N Y N N N N ?      ?      ?      4.254  -2.306 -2.980 O3  S4L 65 
S4L O4  O7  O 0 1 N Y N N N N ?      ?      ?      4.910  -1.707 -0.832 O4  S4L 66 
S4L O2  O8  O 0 1 N Y N N N N ?      ?      ?      2.572  -2.306 -1.376 O2  S4L 67 
S4L H32 H32 H 0 1 N N N N N N 10.853 -1.162 16.811 3.643  4.439  2.565  H32 S4L 68 
S4L H33 H33 H 0 1 N N N N N N 8.650  -2.304 16.171 6.090  3.533  3.075  H33 S4L 69 
S4L H34 H34 H 0 1 N N N N N N 8.397  5.198  18.712 5.400  0.646  -2.209 H34 S4L 70 
S4L H35 H35 H 0 1 N Y N N N N ?      ?      ?      4.470  -3.243 -2.880 H35 S4L 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S4L N9  C10 SING N N 1  
S4L N9  C8  SING N N 2  
S4L O11 C10 DOUB N N 3  
S4L C10 C6  SING N N 4  
S4L C8  C7  SING N N 5  
S4L C5  C6  SING N N 6  
S4L C5  C4  SING N N 7  
S4L C7  C6  SING N N 8  
S4L O13 C12 SING N N 9  
S4L C12 C4  SING N N 10 
S4L C28 C29 DOUB Y N 11 
S4L C28 C27 SING Y N 12 
S4L C29 C30 SING Y N 13 
S4L C4  N3  SING N N 14 
S4L C27 C26 DOUB Y N 15 
S4L C30 C31 DOUB Y N 16 
S4L N3  C2  SING N N 17 
S4L C26 C31 SING Y N 18 
S4L C26 C25 SING N N 19 
S4L O1  C2  DOUB N N 20 
S4L C2  C14 SING N N 21 
S4L O32 C23 DOUB N N 22 
S4L C25 O24 SING N N 23 
S4L C23 O24 SING N N 24 
S4L C23 N22 SING N N 25 
S4L C14 N22 SING N N 26 
S4L C14 C15 SING N N 27 
S4L C15 C16 SING N N 28 
S4L C21 C16 SING N N 29 
S4L C21 C20 SING N N 30 
S4L C16 C17 SING N N 31 
S4L C17 C18 SING N N 32 
S4L C20 C19 SING N N 33 
S4L C19 C18 SING N N 34 
S4L C4  H1  SING N N 35 
S4L C5  H2  SING N N 36 
S4L C5  H3  SING N N 37 
S4L C6  H4  SING N N 38 
S4L C7  H5  SING N N 39 
S4L C7  H6  SING N N 40 
S4L C8  H7  SING N N 41 
S4L C12 H8  SING N N 42 
S4L C16 H9  SING N N 43 
S4L C18 H10 SING N N 44 
S4L C18 H11 SING N N 45 
S4L C19 H12 SING N N 46 
S4L C19 H13 SING N N 47 
S4L C20 H14 SING N N 48 
S4L C20 H15 SING N N 49 
S4L N22 H16 SING N N 50 
S4L C25 H17 SING N N 51 
S4L C25 H18 SING N N 52 
S4L C27 H19 SING N N 53 
S4L C28 H20 SING N N 54 
S4L C31 H21 SING N N 55 
S4L C14 H22 SING N N 56 
S4L C15 H23 SING N N 57 
S4L C15 H24 SING N N 58 
S4L C17 H25 SING N N 59 
S4L C17 H26 SING N N 60 
S4L C21 H27 SING N N 61 
S4L C21 H28 SING N N 62 
S4L C29 H29 SING N N 63 
S4L C30 H30 SING N N 64 
S4L N3  H31 SING N N 65 
S4L C12 S1  SING N N 66 
S4L S1  O3  SING N N 67 
S4L S1  O4  DOUB N N 68 
S4L S1  O2  DOUB N N 69 
S4L C8  H32 SING N N 70 
S4L N9  H33 SING N N 71 
S4L O13 H34 SING N N 72 
S4L O3  H35 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S4L SMILES           ACDLabs              12.01 "O=C(OCc1ccccc1)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                                  
S4L InChI            InChI                1.03  "InChI=1S/C24H35N3O8S/c28-21-18(11-12-25-21)14-20(23(30)36(32,33)34)26-22(29)19(13-16-7-3-1-4-8-16)27-24(31)35-15-17-9-5-2-6-10-17/h2,5-6,9-10,16,18-20,23,30H,1,3-4,7-8,11-15H2,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t18-,19-,20-,23-/m0/s1" 
S4L InChIKey         InChI                1.03  JRFNCWJMGHZHFL-MXBUBSDBSA-N                                                                                                                                                                                                                      
S4L SMILES_CANONICAL CACTVS               3.385 "O[C@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)OCc3ccccc3)[S](O)(=O)=O"                                                                                                                                                               
S4L SMILES           CACTVS               3.385 "O[CH]([CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)OCc3ccccc3)[S](O)(=O)=O"                                                                                                                                                                    
S4L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)S(=O)(=O)O"                                                                                                                                                             
S4L SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NC(CC2CCCCC2)C(=O)NC(CC3CCNC3=O)C(O)S(=O)(=O)O"                                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S4L "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                    
S4L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-3-cyclohexyl-2-(phenylmethoxycarbonylamino)propanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S4L "Create component" 2022-01-19 RCSB 
S4L "Initial release"  2022-05-04 RCSB 
S4L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S4L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C12 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
