data_R4L
# 
_chem_comp.id                                    R4L 
_chem_comp.name                                  "11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ? 
_chem_comp.formula                               "C35 H44 N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-03 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        624.776 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R4L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4B99 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R4L CAP  CAP  C 0 1 N N N -46.577 1.994  -11.545 -5.338 -1.164 2.602  CAP  R4L 1  
R4L CAN  CAN  C 0 1 N N N -46.537 0.788  -10.606 -5.743 -2.646 2.687  CAN  R4L 2  
R4L CAO  CAO  C 0 1 N N N -46.369 1.535  -9.278  -6.817 -2.872 1.602  CAO  R4L 3  
R4L CAQ  CAQ  C 0 1 N N N -45.610 2.828  -9.616  -6.558 -1.746 0.571  CAQ  R4L 4  
R4L CBO  CBO  C 0 1 N N N -45.274 2.604  -11.076 -6.179 -0.542 1.469  CBO  R4L 5  
R4L NBT  NBT  N 0 1 N N N -44.924 3.790  -11.937 -5.383 0.430  0.714  NBT  R4L 6  
R4L CBK  CBK  C 0 1 Y N N -44.630 5.027  -11.500 -5.778 1.761  0.639  CBK  R4L 7  
R4L CAK  CAK  C 0 1 Y N N -43.733 5.094  -10.431 -5.906 2.514  1.798  CAK  R4L 8  
R4L CAG  CAG  C 0 1 Y N N -43.329 6.323  -9.927  -6.260 3.846  1.723  CAG  R4L 9  
R4L CAF  CAF  C 0 1 Y N N -43.787 7.488  -10.514 -6.489 4.440  0.493  CAF  R4L 10 
R4L CAJ  CAJ  C 0 1 Y N N -44.637 7.430  -11.605 -6.381 3.704  -0.667 CAJ  R4L 11 
R4L CBJ  CBJ  C 0 1 Y N N -45.055 6.198  -12.108 -6.042 2.348  -0.607 CBJ  R4L 12 
R4L CBI  CBI  C 0 1 N N N -45.932 6.295  -13.188 -6.018 1.549  -1.838 CBI  R4L 13 
R4L OAE  OAE  O 0 1 N N N -46.733 7.241  -13.207 -6.865 1.797  -2.674 OAE  R4L 14 
R4L NBS  NBS  N 0 1 N N N -45.966 5.412  -14.212 -5.157 0.582  -2.120 NBS  R4L 15 
R4L CAC  CAC  C 0 1 N N N -47.018 5.619  -15.261 -5.336 -0.105 -3.401 CAC  R4L 16 
R4L C5   C5   C 0 1 Y N N -45.191 4.310  -14.306 -4.097 0.151  -1.322 C5   R4L 17 
R4L C6   C6   C 0 1 Y N N -44.837 3.896  -15.591 -2.884 -0.188 -1.905 C6   R4L 18 
R4L N1   N1   N 0 1 Y N N -44.050 2.745  -15.744 -1.903 -0.641 -1.137 N1   R4L 19 
R4L C4   C4   C 0 1 Y N N -44.738 3.548  -13.244 -4.220 0.038  0.068  C4   R4L 20 
R4L N3   N3   N 0 1 Y N N -43.967 2.466  -13.453 -3.202 -0.440 0.776  N3   R4L 21 
R4L C2   C2   C 0 1 Y N N -43.635 2.052  -14.678 -2.067 -0.776 0.169  C2   R4L 22 
R4L NBB  NBB  N 0 1 N N N -42.901 0.957  -14.884 -1.024 -1.280 0.933  NBB  R4L 23 
R4L CBF  CBF  C 0 1 Y N N -42.555 0.089  -13.900 0.218  -1.516 0.346  CBF  R4L 24 
R4L CBH  CBH  C 0 1 Y N N -42.735 -1.259 -14.186 1.020  -2.562 0.808  CBH  R4L 25 
R4L CAM  CAM  C 0 1 Y N N -42.376 -2.251 -13.266 2.250  -2.797 0.228  CAM  R4L 26 
R4L OBC  OBC  O 0 1 N N N -43.301 -1.504 -15.403 0.588  -3.350 1.829  OBC  R4L 27 
R4L CAA  CAA  C 0 1 N N N -43.546 -2.879 -15.705 1.459  -4.401 2.250  CAA  R4L 28 
R4L CAI  CAI  C 0 1 Y N N -41.976 0.444  -12.689 0.655  -0.713 -0.701 CAI  R4L 29 
R4L CAH  CAH  C 0 1 Y N N -41.618 -0.543 -11.777 1.882  -0.943 -1.284 CAH  R4L 30 
R4L CBE  CBE  C 0 1 Y N N -41.830 -1.892 -12.048 2.690  -1.985 -0.822 CBE  R4L 31 
R4L CBD  CBD  C 0 1 N N N -41.407 -2.862 -11.126 4.005  -2.232 -1.446 CBD  R4L 32 
R4L OAD  OAD  O 0 1 N N N -40.390 -3.504 -11.424 4.330  -3.364 -1.750 OAD  R4L 33 
R4L NBQ  NBQ  N 0 1 N N N -41.990 -3.010 -9.921  4.844  -1.204 -1.678 NBQ  R4L 34 
R4L CAU  CAU  C 0 1 N N N -41.422 -4.013 -8.980  6.193  -1.444 -2.209 CAU  R4L 35 
R4L CAS  CAS  C 0 1 N N N -42.448 -4.991 -8.547  7.213  -0.769 -1.287 CAS  R4L 36 
R4L CAT  CAT  C 0 1 N N N -43.191 -2.267 -9.541  4.426  0.179  -1.411 CAT  R4L 37 
R4L CAR  CAR  C 0 1 N N N -44.214 -3.309 -9.145  5.462  0.840  -0.496 CAR  R4L 38 
R4L CBN  CBN  C 0 1 N N N -43.559 -4.102 -7.959  6.853  0.710  -1.131 CBN  R4L 39 
R4L NBR  NBR  N 0 1 N N N -44.464 -4.795 -7.015  7.849  1.368  -0.274 NBR  R4L 40 
R4L CAX  CAX  C 0 1 N N N -45.529 -3.928 -6.474  7.603  2.815  -0.197 CAX  R4L 41 
R4L CAV  CAV  C 0 1 N N N -46.931 -4.216 -7.056  8.704  3.473  0.638  CAV  R4L 42 
R4L NBP  NBP  N 0 1 N N N -47.340 -5.640 -6.950  8.723  2.873  1.979  NBP  R4L 43 
R4L CAB  CAB  C 0 1 N N N -48.280 -6.007 -8.030  7.476  3.158  2.701  CAB  R4L 44 
R4L CAW  CAW  C 0 1 N N N -46.214 -6.567 -6.956  8.969  1.426  1.902  CAW  R4L 45 
R4L CAY  CAY  C 0 1 N N N -45.128 -5.878 -7.785  7.868  0.768  1.068  CAY  R4L 46 
R4L HAP1 HAP1 H 0 0 N N N -46.554 1.707  -12.607 -5.554 -0.664 3.546  HAP1 R4L 47 
R4L HAP2 HAP2 H 0 0 N N N -47.443 2.647  -11.361 -4.276 -1.081 2.369  HAP2 R4L 48 
R4L HAN1 HAN1 H 0 0 N N N -47.470 0.207  -10.639 -4.879 -3.282 2.495  HAN1 R4L 49 
R4L HAN2 HAN2 H 0 0 N N N -45.685 0.126  -10.819 -6.156 -2.865 3.672  HAN2 R4L 50 
R4L HBO  HBO  H 0 1 N N N -44.475 1.852  -11.151 -7.075 -0.070 1.873  HBO  R4L 51 
R4L HAO1 HAO1 H 0 0 N N N -47.352 1.770  -8.844  -6.690 -3.851 1.138  HAO1 R4L 52 
R4L HAO2 HAO2 H 0 0 N N N -45.791 0.926  -8.567  -7.815 -2.777 2.028  HAO2 R4L 53 
R4L HAQ1 HAQ1 H 0 0 N N N -46.246 3.715  -9.481  -5.733 -2.010 -0.090 HAQ1 R4L 54 
R4L HAQ2 HAQ2 H 0 0 N N N -44.701 2.932  -9.005  -7.460 -1.532 -0.002 HAQ2 R4L 55 
R4L HAK  HAK  H 0 1 N N N -43.351 4.183  -9.994  -5.727 2.057  2.760  HAK  R4L 56 
R4L HAG  HAG  H 0 1 N N N -42.660 6.369  -9.080  -6.361 4.427  2.628  HAG  R4L 57 
R4L HAF  HAF  H 0 1 N N N -43.481 8.446  -10.120 -6.752 5.486  0.442  HAF  R4L 58 
R4L HAJ  HAJ  H 0 1 N N N -44.978 8.343  -12.069 -6.560 4.174  -1.623 HAJ  R4L 59 
R4L HAC1 HAC1 H 0 0 N N N -46.931 4.835  -16.028 -6.191 0.322  -3.926 HAC1 R4L 60 
R4L HAC2 HAC2 H 0 0 N N N -48.014 5.569  -14.796 -4.439 0.018  -4.008 HAC2 R4L 61 
R4L HAC3 HAC3 H 0 0 N N N -46.881 6.605  -15.728 -5.512 -1.166 -3.223 HAC3 R4L 62 
R4L H6   H6   H 0 1 N N N -45.165 4.454  -16.456 -2.742 -0.084 -2.970 H6   R4L 63 
R4L HBB  HBB  H 0 1 N N N -42.589 0.765  -15.814 -1.159 -1.467 1.875  HBB  R4L 64 
R4L HAI  HAI  H 0 1 N N N -41.804 1.484  -12.456 0.031  0.092  -1.059 HAI  R4L 65 
R4L HAM  HAM  H 0 1 N N N -42.525 -3.293 -13.507 2.871  -3.605 0.584  HAM  R4L 66 
R4L HAA1 HAA1 H 0 0 N N N -44.001 -2.960 -16.703 1.641  -5.078 1.416  HAA1 R4L 67 
R4L HAA2 HAA2 H 0 0 N N N -42.596 -3.433 -15.689 2.405  -3.977 2.587  HAA2 R4L 68 
R4L HAA3 HAA3 H 0 0 N N N -44.230 -3.303 -14.955 0.996  -4.951 3.070  HAA3 R4L 69 
R4L HAH  HAH  H 0 1 N N N -41.166 -0.257 -10.839 2.219  -0.318 -2.097 HAH  R4L 70 
R4L HAU1 HAU1 H 0 0 N N N -40.604 -4.551 -9.481  6.386  -2.516 -2.245 HAU1 R4L 71 
R4L HAU2 HAU2 H 0 0 N N N -41.029 -3.491 -8.095  6.272  -1.023 -3.211 HAU2 R4L 72 
R4L HAT1 HAT1 H 0 0 N N N -42.976 -1.600 -8.693  4.364  0.729  -2.350 HAT1 R4L 73 
R4L HAT2 HAT2 H 0 0 N N N -43.559 -1.673 -10.391 3.453  0.178  -0.920 HAT2 R4L 74 
R4L HAS1 HAS1 H 0 0 N N N -42.821 -5.575 -9.401  7.197  -1.253 -0.310 HAS1 R4L 75 
R4L HAS2 HAS2 H 0 0 N N N -42.045 -5.674 -7.785  8.210  -0.857 -1.720 HAS2 R4L 76 
R4L HBN  HBN  H 0 1 N N N -43.034 -3.339 -7.365  6.846  1.187  -2.111 HBN  R4L 77 
R4L HAR1 HAR1 H 0 0 N N N -45.147 -2.828 -8.818  5.215  1.893  -0.368 HAR1 R4L 78 
R4L HAR2 HAR2 H 0 0 N N N -44.425 -3.982 -9.989  5.459  0.344  0.475  HAR2 R4L 79 
R4L HAX1 HAX1 H 0 0 N N N -45.571 -4.071 -5.384  7.606  3.238  -1.201 HAX1 R4L 80 
R4L HAX2 HAX2 H 0 0 N N N -45.270 -2.882 -6.697  6.635  2.995  0.271  HAX2 R4L 81 
R4L HAY1 HAY1 H 0 0 N N N -45.586 -5.447 -8.687  6.903  0.925  1.550  HAY1 R4L 82 
R4L HAY2 HAY2 H 0 0 N N N -44.374 -6.624 -8.077  8.064  -0.301 0.985  HAY2 R4L 83 
R4L HAV1 HAV1 H 0 0 N N N -47.665 -3.602 -6.513  9.669  3.316  0.156  HAV1 R4L 84 
R4L HAV2 HAV2 H 0 0 N N N -46.931 -3.933 -8.119  8.509  4.542  0.720  HAV2 R4L 85 
R4L HAB1 HAB1 H 0 0 N N N -48.564 -7.064 -7.926  6.633  2.746  2.146  HAB1 R4L 86 
R4L HAB2 HAB2 H 0 0 N N N -49.179 -5.377 -7.963  7.517  2.702  3.690  HAB2 R4L 87 
R4L HAB3 HAB3 H 0 0 N N N -47.796 -5.852 -9.006  7.353  4.236  2.802  HAB3 R4L 88 
R4L HAW1 HAW1 H 0 0 N N N -45.859 -6.749 -5.931  9.937  1.246  1.434  HAW1 R4L 89 
R4L HAW2 HAW2 H 0 0 N N N -46.504 -7.522 -7.418  8.966  1.003  2.907  HAW2 R4L 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R4L CAP CAN  SING N N 1  
R4L CAP CBO  SING N N 2  
R4L CAN CAO  SING N N 3  
R4L CAO CAQ  SING N N 4  
R4L CAQ CBO  SING N N 5  
R4L CBO NBT  SING N N 6  
R4L NBT CBK  SING N N 7  
R4L NBT C4   SING N N 8  
R4L CBK CAK  SING Y N 9  
R4L CBK CBJ  DOUB Y N 10 
R4L CAK CAG  DOUB Y N 11 
R4L CAG CAF  SING Y N 12 
R4L CAF CAJ  DOUB Y N 13 
R4L CAJ CBJ  SING Y N 14 
R4L CBJ CBI  SING N N 15 
R4L CBI OAE  DOUB N N 16 
R4L CBI NBS  SING N N 17 
R4L NBS CAC  SING N N 18 
R4L NBS C5   SING N N 19 
R4L C5  C6   DOUB Y N 20 
R4L C5  C4   SING Y N 21 
R4L C6  N1   SING Y N 22 
R4L N1  C2   DOUB Y N 23 
R4L C4  N3   DOUB Y N 24 
R4L N3  C2   SING Y N 25 
R4L C2  NBB  SING N N 26 
R4L NBB CBF  SING N N 27 
R4L CBF CBH  SING Y N 28 
R4L CBF CAI  DOUB Y N 29 
R4L CBH CAM  DOUB Y N 30 
R4L CBH OBC  SING N N 31 
R4L CAM CBE  SING Y N 32 
R4L OBC CAA  SING N N 33 
R4L CAI CAH  SING Y N 34 
R4L CAH CBE  DOUB Y N 35 
R4L CBE CBD  SING N N 36 
R4L CBD OAD  DOUB N N 37 
R4L CBD NBQ  SING N N 38 
R4L NBQ CAU  SING N N 39 
R4L NBQ CAT  SING N N 40 
R4L CAU CAS  SING N N 41 
R4L CAS CBN  SING N N 42 
R4L CAT CAR  SING N N 43 
R4L CAR CBN  SING N N 44 
R4L CBN NBR  SING N N 45 
R4L NBR CAX  SING N N 46 
R4L NBR CAY  SING N N 47 
R4L CAX CAV  SING N N 48 
R4L CAV NBP  SING N N 49 
R4L NBP CAB  SING N N 50 
R4L NBP CAW  SING N N 51 
R4L CAW CAY  SING N N 52 
R4L CAP HAP1 SING N N 53 
R4L CAP HAP2 SING N N 54 
R4L CAN HAN1 SING N N 55 
R4L CAN HAN2 SING N N 56 
R4L CBO HBO  SING N N 57 
R4L CAO HAO1 SING N N 58 
R4L CAO HAO2 SING N N 59 
R4L CAQ HAQ1 SING N N 60 
R4L CAQ HAQ2 SING N N 61 
R4L CAK HAK  SING N N 62 
R4L CAG HAG  SING N N 63 
R4L CAF HAF  SING N N 64 
R4L CAJ HAJ  SING N N 65 
R4L CAC HAC1 SING N N 66 
R4L CAC HAC2 SING N N 67 
R4L CAC HAC3 SING N N 68 
R4L C6  H6   SING N N 69 
R4L NBB HBB  SING N N 70 
R4L CAI HAI  SING N N 71 
R4L CAM HAM  SING N N 72 
R4L CAA HAA1 SING N N 73 
R4L CAA HAA2 SING N N 74 
R4L CAA HAA3 SING N N 75 
R4L CAH HAH  SING N N 76 
R4L CAU HAU1 SING N N 77 
R4L CAU HAU2 SING N N 78 
R4L CAT HAT1 SING N N 79 
R4L CAT HAT2 SING N N 80 
R4L CAS HAS1 SING N N 81 
R4L CAS HAS2 SING N N 82 
R4L CBN HBN  SING N N 83 
R4L CAR HAR1 SING N N 84 
R4L CAR HAR2 SING N N 85 
R4L CAX HAX1 SING N N 86 
R4L CAX HAX2 SING N N 87 
R4L CAY HAY1 SING N N 88 
R4L CAY HAY2 SING N N 89 
R4L CAV HAV1 SING N N 90 
R4L CAV HAV2 SING N N 91 
R4L CAB HAB1 SING N N 92 
R4L CAB HAB2 SING N N 93 
R4L CAB HAB3 SING N N 94 
R4L CAW HAW1 SING N N 95 
R4L CAW HAW2 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R4L SMILES           ACDLabs              12.01 "O=C2c7ccccc7N(c1nc(ncc1N2C)Nc3ccc(cc3OC)C(=O)N5CCC(N4CCN(CC4)C)CC5)C6CCCC6" 
R4L InChI            InChI                1.03  
"InChI=1S/C35H44N8O3/c1-39-18-20-41(21-19-39)25-14-16-42(17-15-25)33(44)24-12-13-28(31(22-24)46-3)37-35-36-23-30-32(38-35)43(26-8-4-5-9-26)29-11-7-6-10-27(29)34(45)40(30)2/h6-7,10-13,22-23,25-26H,4-5,8-9,14-21H2,1-3H3,(H,36,37,38)" 
R4L InChIKey         InChI                1.03  OXSKLFUMHBJZNS-UHFFFAOYSA-N 
R4L SMILES_CANONICAL CACTVS               3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7" 
R4L SMILES           CACTVS               3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7" 
R4L SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCCC7" 
R4L SMILES           "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCCC7" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R4L "SYSTEMATIC NAME" ACDLabs              12.01 "11-cyclopentyl-2-[(2-methoxy-4-{[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl}phenyl)amino]-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one" 
R4L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"                  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R4L "Create component"  2012-09-03 EBI  
R4L "Initial release"   2012-09-14 RCSB 
R4L "Modify descriptor" 2014-09-05 RCSB 
# 
