data_R3L
# 
_chem_comp.id                                    R3L 
_chem_comp.name                                  "4-methyl-~{N}-(3-methylphenyl)-3-[(1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H23 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-23 
_chem_comp.pdbx_modified_date                    2023-03-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        449.507 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R3L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BOF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R3L N1  N1  N 0 1 N N N -82.963 -20.046 84.935 -2.360 2.274  -0.257 N1  R3L 1  
R3L N3  N2  N 0 1 Y N N -76.765 -20.099 88.410 -0.949 -4.648 0.689  N3  R3L 2  
R3L C4  C1  C 0 1 Y N N -85.349 -19.636 87.666 1.301  1.962  0.037  C4  R3L 3  
R3L C5  C2  C 0 1 N N N -85.964 -18.450 88.347 2.374  1.002  -0.298 C5  R3L 4  
R3L C6  C3  C 0 1 Y N N -87.636 -17.756 90.041 4.631  0.277  -0.111 C6  R3L 5  
R3L C7  C4  C 0 1 Y N N -87.979 -16.568 89.403 5.961  0.661  -0.234 C7  R3L 6  
R3L C8  C5  C 0 1 Y N N -88.947 -15.724 89.931 6.937  -0.293 -0.445 C8  R3L 7  
R3L C10 C6  C 0 1 Y N N -89.576 -16.092 91.109 6.592  -1.629 -0.534 C10 R3L 8  
R3L C13 C7  C 0 1 Y N N -84.433 -19.327 86.663 -0.026 1.664  -0.272 C13 R3L 9  
R3L C15 C8  C 0 1 Y N N -81.694 -19.540 84.963 -2.814 0.970  -0.187 C15 R3L 10 
R3L C17 C9  C 0 1 Y N N -78.883 -19.893 87.262 -1.430 -2.356 0.446  C17 R3L 11 
R3L C20 C10 C 0 1 Y N N -77.413 -20.635 89.453 0.308  -4.383 0.985  C20 R3L 12 
R3L C21 C11 C 0 1 Y N N -77.499 -19.739 87.349 -1.817 -3.694 0.422  C21 R3L 13 
R3L C22 C12 C 0 1 Y N N -79.653 -18.974 83.855 -4.583 -0.678 -0.319 C22 R3L 14 
R3L C24 C13 C 0 1 Y N N -81.336 -18.819 82.396 -5.322 1.431  -0.702 C24 R3L 15 
R3L N   N3  N 0 1 N N N -86.759 -18.692 89.421 3.640  1.241  0.097  N   R3L 16 
R3L C   C14 C 0 1 N N N -83.915 -22.744 85.009 -1.797 4.747  1.023  C   R3L 17 
R3L O   O1  O 0 1 N N N -85.799 -17.321 87.895 2.114  -0.004 -0.929 O   R3L 18 
R3L C1  C15 C 0 1 Y N N -84.369 -21.661 85.959 -0.707 3.765  0.679  C1  R3L 19 
R3L C11 C16 C 0 1 Y N N -89.239 -17.265 91.755 5.269  -2.015 -0.412 C11 R3L 20 
R3L C12 C17 C 0 1 Y N N -88.273 -18.101 91.224 4.289  -1.066 -0.200 C12 R3L 21 
R3L C14 C18 C 0 1 Y N N -83.965 -20.311 85.794 -1.028 2.567  0.051  C14 R3L 22 
R3L C16 C19 C 0 1 Y N N -79.653 -19.505 86.053 -2.408 -1.283 0.146  C16 R3L 23 
R3L C18 C20 C 0 1 Y N N -79.518 -20.462 88.364 -0.103 -2.042 0.757  C18 R3L 24 
R3L C19 C21 C 0 1 Y N N -78.782 -20.838 89.473 0.771  -3.080 1.029  C19 R3L 25 
R3L C2  C22 C 0 1 Y N N -85.229 -21.954 87.017 0.609  4.062  0.980  C2  R3L 26 
R3L C23 C23 C 0 1 Y N N -81.039 -19.170 83.730 -4.174 0.668  -0.402 C23 R3L 27 
R3L C25 C24 C 0 1 N N N -77.860 -18.139 82.251 -6.783 -1.879 -0.577 C25 R3L 28 
R3L C3  C25 C 0 1 Y N N -85.718 -20.965 87.853 1.612  3.168  0.668  C3  R3L 29 
R3L C9  C26 C 0 1 N N N -89.289 -14.428 89.250 8.379  0.123  -0.579 C9  R3L 30 
R3L N2  N4  N 0 1 Y N N -80.995 -19.664 86.112 -1.979 -0.026 0.078  N2  R3L 31 
R3L N4  N5  N 0 1 Y N N -78.940 -19.141 84.961 -3.675 -1.611 -0.043 N4  R3L 32 
R3L N5  N6  N 0 1 Y N N -80.250 -18.426 81.742 -6.342 0.625  -0.795 N5  R3L 33 
R3L N6  N7  N 0 1 Y N N -79.235 -18.518 82.627 -5.925 -0.692 -0.560 N6  R3L 34 
R3L H14 H1  H 0 1 N N N -83.224 -20.292 84.002 -2.964 2.984  -0.523 H14 R3L 35 
R3L H6  H2  H 0 1 N N N -87.484 -16.298 88.482 6.231  1.705  -0.166 H6  R3L 36 
R3L H10 H3  H 0 1 N N N -90.340 -15.453 91.528 7.357  -2.373 -0.699 H10 R3L 37 
R3L H13 H4  H 0 1 N N N -84.081 -18.312 86.557 -0.273 0.733  -0.761 H13 R3L 38 
R3L H17 H5  H 0 1 N N N -76.839 -20.923 90.321 0.988  -5.195 1.198  H17 R3L 39 
R3L H18 H6  H 0 1 N N N -76.986 -19.301 86.506 -2.839 -3.951 0.183  H18 R3L 40 
R3L H19 H7  H 0 1 N N N -82.324 -18.864 81.961 -5.352 2.503  -0.833 H19 R3L 41 
R3L H5  H8  H 0 1 N N N -86.726 -19.612 89.813 3.864  2.082  0.525  H5  R3L 42 
R3L H2  H9  H 0 1 N N N -82.982 -23.192 85.381 -1.950 5.428  0.185  H2  R3L 43 
R3L H   H10 H 0 1 N N N -84.692 -23.520 84.940 -2.722 4.208  1.226  H   R3L 44 
R3L H1  H11 H 0 1 N N N -83.741 -22.309 84.014 -1.507 5.317  1.906  H1  R3L 45 
R3L H11 H12 H 0 1 N N N -89.732 -17.531 92.679 5.003  -3.059 -0.482 H11 R3L 46 
R3L H12 H13 H 0 1 N N N -88.015 -19.020 91.729 3.256  -1.367 -0.104 H12 R3L 47 
R3L H15 H14 H 0 1 N N N -80.588 -20.610 88.352 0.231  -1.015 0.784  H15 R3L 48 
R3L H16 H15 H 0 1 N N N -79.264 -21.279 90.333 1.803  -2.875 1.274  H16 R3L 49 
R3L H3  H16 H 0 1 N N N -85.521 -22.979 87.189 0.853  4.998  1.461  H3  R3L 50 
R3L H21 H17 H 0 1 N N N -77.845 -17.801 81.204 -6.809 -2.294 -1.585 H21 R3L 51 
R3L H20 H18 H 0 1 N N N -77.513 -17.324 82.904 -6.385 -2.624 0.112  H20 R3L 52 
R3L H22 H19 H 0 1 N N N -77.196 -19.008 82.365 -7.792 -1.603 -0.271 H22 R3L 53 
R3L H4  H20 H 0 1 N N N -86.391 -21.227 88.656 2.638  3.400  0.913  H4  R3L 54 
R3L H7  H21 H 0 1 N N N -90.106 -14.595 88.532 8.849  0.124  0.405  H7  R3L 55 
R3L H8  H22 H 0 1 N N N -89.607 -13.691 90.002 8.900  -0.579 -1.230 H8  R3L 56 
R3L H9  H23 H 0 1 N N N -88.404 -14.049 88.717 8.431  1.124  -1.007 H9  R3L 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R3L N5  C24 DOUB Y N 1  
R3L N5  N6  SING Y N 2  
R3L C25 N6  SING N N 3  
R3L C24 C23 SING Y N 4  
R3L N6  C22 SING Y N 5  
R3L C23 C22 DOUB Y N 6  
R3L C23 C15 SING Y N 7  
R3L C22 N4  SING Y N 8  
R3L N1  C15 SING N N 9  
R3L N1  C14 SING N N 10 
R3L N4  C16 DOUB Y N 11 
R3L C15 N2  DOUB Y N 12 
R3L C   C1  SING N N 13 
R3L C14 C1  DOUB Y N 14 
R3L C14 C13 SING Y N 15 
R3L C1  C2  SING Y N 16 
R3L C16 N2  SING Y N 17 
R3L C16 C17 SING N N 18 
R3L C13 C4  DOUB Y N 19 
R3L C2  C3  DOUB Y N 20 
R3L C17 C21 DOUB Y N 21 
R3L C17 C18 SING Y N 22 
R3L C21 N3  SING Y N 23 
R3L C4  C3  SING Y N 24 
R3L C4  C5  SING N N 25 
R3L O   C5  DOUB N N 26 
R3L C5  N   SING N N 27 
R3L C18 C19 DOUB Y N 28 
R3L N3  C20 DOUB Y N 29 
R3L C9  C8  SING N N 30 
R3L C7  C8  DOUB Y N 31 
R3L C7  C6  SING Y N 32 
R3L N   C6  SING N N 33 
R3L C20 C19 SING Y N 34 
R3L C8  C10 SING Y N 35 
R3L C6  C12 DOUB Y N 36 
R3L C10 C11 DOUB Y N 37 
R3L C12 C11 SING Y N 38 
R3L N1  H14 SING N N 39 
R3L C7  H6  SING N N 40 
R3L C10 H10 SING N N 41 
R3L C13 H13 SING N N 42 
R3L C20 H17 SING N N 43 
R3L C21 H18 SING N N 44 
R3L C24 H19 SING N N 45 
R3L N   H5  SING N N 46 
R3L C   H2  SING N N 47 
R3L C   H   SING N N 48 
R3L C   H1  SING N N 49 
R3L C11 H11 SING N N 50 
R3L C12 H12 SING N N 51 
R3L C18 H15 SING N N 52 
R3L C19 H16 SING N N 53 
R3L C2  H3  SING N N 54 
R3L C25 H21 SING N N 55 
R3L C25 H20 SING N N 56 
R3L C25 H22 SING N N 57 
R3L C3  H4  SING N N 58 
R3L C9  H7  SING N N 59 
R3L C9  H8  SING N N 60 
R3L C9  H9  SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R3L InChI            InChI                1.06    "InChI=1S/C26H23N7O/c1-16-6-4-8-20(12-16)29-26(34)18-10-9-17(2)22(13-18)30-24-21-15-28-33(3)25(21)32-23(31-24)19-7-5-11-27-14-19/h4-15H,1-3H3,(H,29,34)(H,30,31,32)" 
R3L InChIKey         InChI                1.06    BZJAAQAQRWJHJG-UHFFFAOYSA-N                                                                                                                                          
R3L SMILES_CANONICAL CACTVS               3.385   "Cn1ncc2c(Nc3cc(ccc3C)C(=O)Nc4cccc(C)c4)nc(nc12)c5cccnc5"                                                                                                            
R3L SMILES           CACTVS               3.385   "Cn1ncc2c(Nc3cc(ccc3C)C(=O)Nc4cccc(C)c4)nc(nc12)c5cccnc5"                                                                                                            
R3L SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc(c1)NC(=O)c2ccc(c(c2)Nc3c4cnn(c4nc(n3)c5cccnc5)C)C"                                                                                                          
R3L SMILES           "OpenEye OEToolkits" 3.1.0.0 "Cc1cccc(c1)NC(=O)c2ccc(c(c2)Nc3c4cnn(c4nc(n3)c5cccnc5)C)C"                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           R3L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "4-methyl-~{N}-(3-methylphenyl)-3-[(1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-yl)amino]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R3L "Create component" 2022-11-23 PDBE 
R3L "Initial release"  2023-03-08 RCSB 
# 
