data_QDL
# 
_chem_comp.id                                    QDL 
_chem_comp.name                                  Antheraxanthin 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C40 H56 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-7-oxabicyclo[4.1.0]heptan-3-ol" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-25 
_chem_comp.pdbx_modified_date                    2023-10-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        584.871 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QDL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BCV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QDL C1   C1  C 0 1 N N N 222.995 257.720 236.493 -13.200 1.034  -0.779 C1   QDL 1  
QDL C2   C2  C 0 1 N N S 223.430 259.092 236.010 -13.957 -0.240 -0.384 C2   QDL 2  
QDL C3   C3  C 0 1 N N N 222.343 260.113 236.291 -13.502 -0.665 1.012  C3   QDL 3  
QDL C4   C4  C 0 1 N N R 220.992 259.646 235.793 -11.990 -0.824 1.055  C4   QDL 4  
QDL C5   C5  C 0 1 N N S 220.716 258.218 235.501 -11.123 -0.108 0.031  C5   QDL 5  
QDL C6   C6  C 0 1 N N N 221.804 257.117 235.719 -11.759 0.662  -1.124 C6   QDL 6  
QDL C10  C7  C 0 1 N N N 221.270 255.911 236.502 -10.950 1.933  -1.393 C10  QDL 7  
QDL C11  C8  C 0 1 N N N 222.298 256.597 234.363 -11.754 -0.213 -2.380 C11  QDL 8  
QDL C13  C9  C 0 1 N N N 218.544 257.635 234.380 -8.659  -0.123 0.012  C13  QDL 9  
QDL C14  C10 C 0 1 N N N 217.174 257.155 234.272 -7.401  0.362  0.451  C14  QDL 10 
QDL C15  C11 C 0 1 N N N 216.601 257.091 233.045 -6.255  -0.177 -0.043 C15  QDL 11 
QDL C16  C12 C 0 1 N N N 215.318 256.558 232.694 -5.008  0.304  0.393  C16  QDL 12 
QDL C17  C13 C 0 1 N N N 215.043 256.113 231.461 -3.857  -0.237 -0.104 C17  QDL 13 
QDL C18  C14 C 0 1 N N N 213.793 255.551 230.968 -2.613  0.242  0.331  C18  QDL 14 
QDL C19  C15 C 0 1 N N N 216.482 256.700 235.527 -7.334  1.474  1.465  C19  QDL 15 
QDL C20  C16 C 0 1 N N N 213.721 255.172 229.668 -1.452  -0.304 -0.170 C20  QDL 16 
QDL C21  C17 C 0 1 N N N 212.640 255.436 231.927 -2.547  1.355  1.345  C21  QDL 17 
QDL C22  C18 C 0 1 N N N 212.597 254.634 228.959 -0.210  0.175  0.264  C22  QDL 18 
QDL C23  C19 C 0 1 N N N 212.586 254.526 227.612 0.951   -0.371 -0.237 C23  QDL 19 
QDL C24  C20 C 0 1 N N N 211.494 254.003 226.840 2.193   0.107  0.196  C24  QDL 20 
QDL C25  C21 C 0 1 N N N 211.445 253.811 225.497 3.355   -0.439 -0.305 C25  QDL 21 
QDL C26  C22 C 0 1 N N N 210.222 253.300 224.893 4.597   0.040  0.129  C26  QDL 22 
QDL C27  C23 C 0 1 N N N 210.019 253.048 223.591 5.758   -0.506 -0.372 C27  QDL 23 
QDL C28  C24 C 0 1 N N N 212.601 254.117 224.584 3.289   -1.551 -1.319 C28  QDL 24 
QDL C29  C25 C 0 1 N N N 208.794 252.562 223.034 7.002   -0.027 0.062  C29  QDL 25 
QDL C30  C26 C 0 1 N N N 208.332 252.750 221.773 8.153   -0.568 -0.434 C30  QDL 26 
QDL C31  C27 C 0 1 N N N 207.065 252.153 221.377 9.400   -0.087 0.002  C31  QDL 27 
QDL C32  C28 C 0 1 N N N 209.084 253.546 220.743 8.086   -1.680 -1.448 C32  QDL 28 
QDL C33  C29 C 0 1 N N N 206.493 252.234 220.175 10.546  -0.626 -0.492 C33  QDL 29 
QDL C34  C30 C 0 1 N N N 205.234 251.653 219.755 11.800  -0.060 -0.151 C34  QDL 30 
QDL C35  C31 C 0 1 N N N 205.354 250.434 218.832 12.825  -0.947 0.495  C35  QDL 31 
QDL C36  C32 C 0 1 N N N 204.030 250.068 218.165 13.912  -0.098 1.158  C36  QDL 32 
QDL C37  C33 C 0 1 N N R 202.852 250.215 219.109 14.406  0.940  0.143  C37  QDL 33 
QDL C38  C34 C 0 1 N N N 202.751 251.649 219.589 13.280  1.943  -0.114 C38  QDL 34 
QDL C39  C35 C 0 1 N N N 204.053 252.161 220.150 12.003  1.218  -0.424 C39  QDL 35 
QDL C41  C36 C 0 1 N N N 205.827 249.211 219.626 13.459  -1.845 -0.568 C41  QDL 36 
QDL C42  C37 C 0 1 N N N 206.361 250.711 217.710 12.147  -1.816 1.556  C42  QDL 37 
QDL C43  C38 C 0 1 N N N 203.900 253.277 221.145 10.891  1.988  -1.089 C43  QDL 38 
QDL C8   C39 C 0 1 N N N 219.297 257.714 235.464 -9.785  0.407  0.498  C8   QDL 39 
QDL C9   C40 C 0 1 N N N 219.891 260.646 236.057 -11.399 -0.972 2.459  C9   QDL 40 
QDL O12  O1  O 0 1 N N N 224.636 259.476 236.673 -15.362 0.021  -0.372 O12  QDL 41 
QDL O40  O2  O 0 1 N N N 201.648 249.845 218.436 15.546  1.622  0.670  O40  QDL 42 
QDL O7   O3  O 0 1 N N N 221.024 259.103 234.441 -11.316 -1.513 0.012  O7   QDL 43 
QDL HC1B H1  H 0 0 N N N 222.710 257.803 237.552 -13.679 1.490  -1.645 HC1B QDL 44 
QDL HC1A H2  H 0 0 N N N 223.850 257.035 236.396 -13.207 1.736  0.055  HC1A QDL 45 
QDL HC2  H3  H 0 1 N N N 223.598 259.046 234.924 -13.735 -1.033 -1.098 HC2  QDL 46 
QDL HC3B H4  H 0 0 N N N 222.602 261.056 235.788 -13.805 0.092  1.735  HC3B QDL 47 
QDL HC3A H5  H 0 0 N N N 222.284 260.281 237.377 -13.970 -1.616 1.269  HC3A QDL 48 
QDL H10C H6  H 0 0 N N N 220.905 256.244 237.485 -9.926  1.664  -1.653 H10C QDL 49 
QDL H10A H7  H 0 0 N N N 220.445 255.447 235.942 -11.402 2.484  -2.217 H10A QDL 50 
QDL H10B H8  H 0 0 N N N 222.078 255.177 236.640 -10.946 2.556  -0.498 H10B QDL 51 
QDL H11C H9  H 0 0 N N N 223.063 255.823 234.523 -12.325 -1.122 -2.191 H11C QDL 52 
QDL H11B H10 H 0 0 N N N 221.453 256.167 233.805 -12.208 0.335  -3.206 H11B QDL 53 
QDL H11A H11 H 0 0 N N N 222.732 257.428 233.788 -10.728 -0.474 -2.637 H11A QDL 54 
QDL HC13 H12 H 0 0 N N N 219.002 257.968 233.461 -8.706  -0.920 -0.715 HC13 QDL 55 
QDL HC15 H13 H 0 0 N N N 217.185 257.492 232.230 -6.303  -0.974 -0.770 HC15 QDL 56 
QDL HC16 H14 H 0 0 N N N 214.547 256.514 233.449 -4.960  1.101  1.119  HC16 QDL 57 
QDL HC17 H15 H 0 0 N N N 215.848 256.179 230.744 -3.905  -1.034 -0.831 HC17 QDL 58 
QDL H19C H16 H 0 0 N N N 217.148 256.852 236.389 -7.317  1.050  2.469  H19C QDL 59 
QDL H19A H17 H 0 0 N N N 215.560 257.283 235.669 -6.430  2.061  1.303  H19A QDL 60 
QDL H19B H18 H 0 0 N N N 216.232 255.632 235.441 -8.208  2.117  1.358  H19B QDL 61 
QDL HC20 H19 H 0 0 N N N 214.627 255.291 229.093 -1.500  -1.101 -0.897 HC20 QDL 62 
QDL H21A H20 H 0 0 N N N 212.947 255.807 232.916 -2.529  0.930  2.349  H21A QDL 63 
QDL H21B H21 H 0 0 N N N 211.795 256.035 231.557 -1.643  1.941  1.182  H21B QDL 64 
QDL H21C H22 H 0 0 N N N 212.335 254.382 232.009 -3.421  1.997  1.237  H21C QDL 65 
QDL HC22 H23 H 0 0 N N N 211.733 254.305 229.518 -0.162  0.972  0.990  HC22 QDL 66 
QDL HC23 H24 H 0 0 N N N 213.463 254.858 227.077 0.904   -1.168 -0.964 HC23 QDL 67 
QDL HC24 H25 H 0 0 N N N 210.607 253.730 227.393 2.241   0.905  0.923  HC24 QDL 68 
QDL HC26 H26 H 0 0 N N N 209.396 253.104 225.560 4.645   0.837  0.856  HC26 QDL 69 
QDL HC27 H27 H 0 0 N N N 210.841 253.225 222.913 5.710   -1.303 -1.099 HC27 QDL 70 
QDL H28C H28 H 0 0 N N N 213.448 254.492 225.177 3.271   -1.127 -2.323 H28C QDL 71 
QDL H28A H29 H 0 0 N N N 212.902 253.201 224.054 4.162   -2.194 -1.212 H28A QDL 72 
QDL H28B H30 H 0 0 N N N 212.299 254.882 223.853 2.384   -2.138 -1.156 H28B QDL 73 
QDL HC29 H31 H 0 0 N N N 208.166 251.980 223.692 7.049   0.771  0.789  HC29 QDL 74 
QDL HC31 H32 H 0 0 N N N 206.536 251.589 222.131 9.448   0.710  0.729  HC31 QDL 75 
QDL H32A H33 H 0 0 N N N 210.015 253.932 221.185 8.068   -1.256 -2.452 H32A QDL 76 
QDL H32B H34 H 0 0 N N N 209.325 252.901 219.885 8.960   -2.323 -1.341 H32B QDL 77 
QDL H32C H35 H 0 0 N N N 208.462 254.388 220.405 7.182   -2.267 -1.285 H32C QDL 78 
QDL HC33 H36 H 0 0 N N N 207.031 252.798 219.428 10.501  -1.485 -1.145 HC33 QDL 79 
QDL H36B H37 H 0 0 N N N 203.875 250.729 217.300 13.500  0.409  2.030  H36B QDL 80 
QDL H36A H38 H 0 0 N N N 204.082 249.024 217.824 14.741  -0.738 1.460  H36A QDL 81 
QDL HC37 H39 H 0 0 N N N 203.012 249.561 219.979 14.673  0.442  -0.790 HC37 QDL 82 
QDL H38B H40 H 0 0 N N N 202.457 252.285 218.741 13.139  2.562  0.773  H38B QDL 83 
QDL H38A H41 H 0 0 N N N 201.982 251.705 220.374 13.548  2.580  -0.957 H38A QDL 84 
QDL H41C H42 H 0 0 N N N 205.113 249.000 220.436 13.939  -1.228 -1.327 H41C QDL 85 
QDL H41A H43 H 0 0 N N N 205.889 248.341 218.956 14.204  -2.490 -0.101 H41A QDL 86 
QDL H41B H44 H 0 0 N N N 206.819 249.414 220.056 12.688  -2.459 -1.033 H41B QDL 87 
QDL H42A H45 H 0 0 N N N 207.334 250.980 218.148 12.901  -2.398 2.085  H42A QDL 88 
QDL H42C H46 H 0 0 N N N 206.475 249.810 217.089 11.617  -1.179 2.264  H42C QDL 89 
QDL H42B H47 H 0 0 N N N 205.997 251.542 217.088 11.439  -2.491 1.074  H42B QDL 90 
QDL H43A H48 H 0 0 N N N 204.892 253.589 221.502 10.197  2.352  -0.331 H43A QDL 91 
QDL H43B H49 H 0 0 N N N 203.398 254.130 220.665 11.311  2.835  -1.633 H43B QDL 92 
QDL H43C H50 H 0 0 N N N 203.297 252.929 221.996 10.362  1.336  -1.783 H43C QDL 93 
QDL HC8  H51 H 0 1 N N N 218.860 257.391 236.397 -9.738  1.204  1.225  HC8  QDL 94 
QDL HC9B H52 H 0 0 N N N 219.953 260.994 237.099 -12.095 -1.525 3.089  HC9B QDL 95 
QDL HC9C H53 H 0 0 N N N 220.004 261.503 235.377 -10.454 -1.513 2.399  HC9C QDL 96 
QDL HC9A H54 H 0 0 N N N 218.914 260.169 235.887 -11.226 0.015  2.887  HC9A QDL 97 
QDL HO12 H55 H 0 0 N N N 225.314 258.835 236.495 -15.901 -0.740 -0.118 HO12 QDL 98 
QDL HO40 H56 H 0 0 N N N 200.912 249.938 219.029 15.910  2.294  0.079  HO40 QDL 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QDL C42 C35  SING N N 1   
QDL C36 C35  SING N N 2   
QDL C36 C37  SING N N 3   
QDL O40 C37  SING N N 4   
QDL C35 C41  SING N N 5   
QDL C35 C34  SING N N 6   
QDL C37 C38  SING N N 7   
QDL C38 C39  SING N N 8   
QDL C34 C39  DOUB N N 9   
QDL C34 C33  SING N N 10  
QDL C39 C43  SING N N 11  
QDL C33 C31  DOUB N E 12  
QDL C32 C30  SING N N 13  
QDL C31 C30  SING N N 14  
QDL C30 C29  DOUB N E 15  
QDL C29 C27  SING N N 16  
QDL C27 C26  DOUB N E 17  
QDL C28 C25  SING N N 18  
QDL C26 C25  SING N N 19  
QDL C25 C24  DOUB N E 20  
QDL C24 C23  SING N N 21  
QDL C23 C22  DOUB N E 22  
QDL C22 C20  SING N N 23  
QDL C20 C18  DOUB N E 24  
QDL C18 C17  SING N N 25  
QDL C18 C21  SING N N 26  
QDL C17 C16  DOUB N E 27  
QDL C16 C15  SING N N 28  
QDL C15 C14  DOUB N E 29  
QDL C14 C13  SING N N 30  
QDL C14 C19  SING N N 31  
QDL C11 C6   SING N N 32  
QDL C13 C8   DOUB N E 33  
QDL O7  C5   SING N N 34  
QDL O7  C4   SING N N 35  
QDL C8  C5   SING N N 36  
QDL C5  C6   SING N N 37  
QDL C5  C4   SING N N 38  
QDL C6  C1   SING N N 39  
QDL C6  C10  SING N N 40  
QDL C4  C9   SING N N 41  
QDL C4  C3   SING N N 42  
QDL C2  C3   SING N N 43  
QDL C2  C1   SING N N 44  
QDL C2  O12  SING N N 45  
QDL C1  HC1B SING N N 46  
QDL C1  HC1A SING N N 47  
QDL C2  HC2  SING N N 48  
QDL C3  HC3B SING N N 49  
QDL C3  HC3A SING N N 50  
QDL C10 H10C SING N N 51  
QDL C10 H10A SING N N 52  
QDL C10 H10B SING N N 53  
QDL C11 H11C SING N N 54  
QDL C11 H11B SING N N 55  
QDL C11 H11A SING N N 56  
QDL C13 HC13 SING N N 57  
QDL C15 HC15 SING N N 58  
QDL C16 HC16 SING N N 59  
QDL C17 HC17 SING N N 60  
QDL C19 H19C SING N N 61  
QDL C19 H19A SING N N 62  
QDL C19 H19B SING N N 63  
QDL C20 HC20 SING N N 64  
QDL C21 H21A SING N N 65  
QDL C21 H21B SING N N 66  
QDL C21 H21C SING N N 67  
QDL C22 HC22 SING N N 68  
QDL C23 HC23 SING N N 69  
QDL C24 HC24 SING N N 70  
QDL C26 HC26 SING N N 71  
QDL C27 HC27 SING N N 72  
QDL C28 H28C SING N N 73  
QDL C28 H28A SING N N 74  
QDL C28 H28B SING N N 75  
QDL C29 HC29 SING N N 76  
QDL C31 HC31 SING N N 77  
QDL C32 H32A SING N N 78  
QDL C32 H32B SING N N 79  
QDL C32 H32C SING N N 80  
QDL C33 HC33 SING N N 81  
QDL C36 H36B SING N N 82  
QDL C36 H36A SING N N 83  
QDL C37 HC37 SING N N 84  
QDL C38 H38B SING N N 85  
QDL C38 H38A SING N N 86  
QDL C41 H41C SING N N 87  
QDL C41 H41A SING N N 88  
QDL C41 H41B SING N N 89  
QDL C42 H42A SING N N 90  
QDL C42 H42C SING N N 91  
QDL C42 H42B SING N N 92  
QDL C43 H43A SING N N 93  
QDL C43 H43B SING N N 94  
QDL C43 H43C SING N N 95  
QDL C8  HC8  SING N N 96  
QDL C9  HC9B SING N N 97  
QDL C9  HC9C SING N N 98  
QDL C9  HC9A SING N N 99  
QDL O12 HO12 SING N N 100 
QDL O40 HO40 SING N N 101 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QDL InChI            InChI                1.06    "InChI=1S/C40H56O3/c1-29(17-13-19-31(3)21-22-36-33(5)25-34(41)26-37(36,6)7)15-11-12-16-30(2)18-14-20-32(4)23-24-40-38(8,9)27-35(42)28-39(40,10)43-40/h11-24,34-35,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,22-21+,24-23+,29-15+,30-16+,31-19+,32-20+/t34-,35+,39-,40+/m1/s1" 
QDL InChIKey         InChI                1.06    OFNSUWBAQRCHAV-OYQUVCAXSA-N                                                                                                                                                                                                                                                     
QDL SMILES_CANONICAL CACTVS               3.385   "CC1=C(\C=C\C(C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)C(C)(C)C[C@H](O)C1"                                                                                                                                                                   
QDL SMILES           CACTVS               3.385   "CC1=C(C=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)C(C)(C)C[CH](O)C1"                                                                                                                                                                                   
QDL SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1=C(C(C[C@@H](C1)O)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C)/C)/C"                                                                                                                                                              
QDL SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC1=C(C(CC(C1)O)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C)C)C"                                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           QDL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-7-oxabicyclo[4.1.0]heptan-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QDL "Create component" 2022-10-25 PDBE 
QDL "Initial release"  2023-11-01 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      QDL 
_pdbx_chem_comp_synonyms.name         "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-7-oxabicyclo[4.1.0]heptan-3-ol" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
