data_MDL
# 
_chem_comp.id                                    MDL 
_chem_comp.name                                  "[DEHYDROXY-N-METHYL-TYROSYL-PROLINYL]-[4,4,5,5,5-PENTAFLUORO-3-OXY-1-[3-INDOLYL]-PENT-2-YL]AMINE" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H29 F5 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        564.547 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MDL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1AD8 
_chem_comp.pdbx_subcomponent_list                "ZAE PRO 01C" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MDL N2   N2   N 0 1 N N N N N N 15.895 -11.037 23.594 -3.937 -0.663 -1.779 N    ZAE 1  
MDL C6   C6   C 0 1 N N R N N N 17.172 -10.351 23.512 -3.858 -0.217 -0.382 CA   ZAE 2  
MDL C7   C7   C 0 1 N N N N N N 16.865 -8.997  22.866 -2.491 0.357  -0.114 C    ZAE 3  
MDL O9   O9   O 0 1 N N N N N N 15.872 -8.352  23.222 -1.849 0.843  -1.020 O    ZAE 4  
MDL C55  C55  C 0 1 N N N N N N 17.659 -10.194 24.963 -4.920 0.855  -0.128 CB   ZAE 5  
MDL C57  C57  C 0 1 Y N N N N N 19.133 -9.804  25.110 -6.291 0.248  -0.276 CG   ZAE 6  
MDL C60  C60  C 0 1 Y N N N N N 20.180 -10.549 24.486 -6.923 -0.309 0.820  CD1  ZAE 7  
MDL C64  C64  C 0 1 Y N N N N N 19.473 -8.674  25.889 -6.920 0.254  -1.507 CD2  ZAE 8  
MDL C61  C61  C 0 1 Y N N N N N 21.528 -10.114 24.593 -8.181 -0.865 0.684  CE1  ZAE 9  
MDL C63  C63  C 0 1 Y N N N N N 20.814 -8.252  26.001 -8.176 -0.307 -1.644 CE2  ZAE 10 
MDL C62  C62  C 0 1 Y N N N N N 21.834 -8.955  25.322 -8.808 -0.864 -0.548 CZ   ZAE 11 
MDL C1   C1   C 0 1 N N N N N N 15.149 -11.279 22.363 -3.414 -2.028 -1.927 C10  ZAE 12 
MDL N8   N8   N 0 1 N N N N N N 17.730 -8.570  21.909 -1.981 0.330  1.134  N    PRO 13 
MDL C18  C18  C 0 1 N N S N N N 17.413 -7.291  21.184 -0.664 0.847  1.533  CA   PRO 14 
MDL C21  C21  C 0 1 N N N N N N 16.079 -7.350  20.453 0.422  0.099  0.804  C    PRO 15 
MDL O24  O24  O 0 1 N N N N N N 15.612 -8.418  20.079 0.133  -0.784 0.024  O    PRO 16 
MDL C15  C15  C 0 1 N N N N N N 18.589 -7.158  20.229 -0.527 0.627  3.054  CB   PRO 17 
MDL C12  C12  C 0 1 N N N N N N 19.688 -8.048  20.685 -2.001 0.505  3.524  CG   PRO 18 
MDL C11  C11  C 0 1 N N N N N N 19.008 -9.180  21.445 -2.650 -0.228 2.323  CD   PRO 19 
MDL N23  N23  N 0 1 N N N N N N 15.479 -6.137  20.352 1.716  0.410  1.019  N    01C 20 
MDL C25  C25  C 0 1 N N S N N N 14.268 -5.928  19.557 2.772  -0.317 0.311  CA   01C 21 
MDL C26  C26  C 0 1 N N N N N N 13.286 -5.153  20.420 4.022  0.561  0.217  CB   01C 22 
MDL C27  C27  C 0 1 Y N N N N N 12.697 -6.057  21.403 3.726  1.766  -0.637 CG   01C 23 
MDL C30  C30  C 0 1 Y N N N N N 12.390 -7.392  21.187 3.972  1.894  -1.951 CD1  01C 24 
MDL C31  C31  C 0 1 Y N N N N N 12.105 -5.648  22.630 3.109  3.019  -0.193 CD2  01C 25 
MDL C32  C32  C 0 1 Y N N N N N 11.389 -6.730  23.111 3.036  3.841  -1.333 CE2  01C 26 
MDL N33  N33  N 0 1 Y N N N N N 11.600 -7.783  22.213 3.569  3.128  -2.383 NE1  01C 27 
MDL C34  C34  C 0 1 Y N N N N N 10.656 -6.594  24.318 2.488  5.115  -1.220 CZ2  01C 28 
MDL C35  C35  C 0 1 Y N N N N N 10.670 -5.378  25.052 2.025  5.554  0.001  CH2  01C 29 
MDL C36  C36  C 0 1 Y N N N N N 11.425 -4.282  24.599 2.099  4.739  1.122  CZ3  01C 30 
MDL C37  C37  C 0 1 Y N N N N N 12.129 -4.438  23.385 2.634  3.485  1.034  CE3  01C 31 
MDL C44  C44  C 0 1 N N N N N N 14.596 -5.133  18.304 3.102  -1.582 1.062  C    01C 32 
MDL O46  O46  O 0 1 N N N N N N 13.321 -4.812  17.785 2.727  -1.722 2.201  O    01C 33 
MDL C47  C47  C 0 1 N N N N N N 15.428 -6.035  17.324 3.899  -2.670 0.391  C1   01C 34 
MDL F48  F48  F 0 1 N N N N N N 14.826 -7.223  17.164 5.187  -2.202 0.114  F11  01C 35 
MDL F49  F49  F 0 1 N N N N N N 16.603 -6.276  17.885 3.978  -3.780 1.239  F12  01C 36 
MDL C50  C50  C 0 1 N N N N N N 15.777 -5.426  15.994 3.211  -3.075 -0.915 C2   01C 37 
MDL F51  F51  F 0 1 N N N N N N 16.375 -6.377  15.335 3.132  -1.965 -1.763 F21  01C 38 
MDL F52  F52  F 0 1 N N N N N N 16.591 -4.395  16.133 3.951  -4.086 -1.538 F22  01C 39 
MDL F53  F53  F 0 1 N N N N N N 14.678 -5.086  15.409 1.923  -3.544 -0.638 F23  01C 40 
MDL HN2  HN2  H 0 1 N N N N N N 15.308 -10.475 24.176 -3.453 -0.022 -2.391 H    ZAE 41 
MDL H6   H6   H 0 1 N N N N N N 17.945 -10.871 22.927 -4.032 -1.065 0.281  HA   ZAE 42 
MDL H551 H551 H 0 0 N N N N N N 17.056 -9.405  25.435 -4.804 1.249  0.882  HB2  ZAE 43 
MDL H552 H552 H 0 0 N N N N N N 17.516 -11.160 25.470 -4.800 1.663  -0.849 HB3  ZAE 44 
MDL H60  H60  H 0 1 N N N N N N 19.946 -11.446 23.931 -6.434 -0.310 1.783  HD1  ZAE 45 
MDL H64  H64  H 0 1 N N N N N N 18.697 -8.128  26.404 -6.428 0.693  -2.363 HD2  ZAE 46 
MDL H61  H61  H 0 1 N N N N N N 22.317 -10.675 24.114 -8.675 -1.301 1.540  HE1  ZAE 47 
MDL H63  H63  H 0 1 N N N N N N 21.061 -7.392  26.606 -8.666 -0.306 -2.607 HE2  ZAE 48 
MDL H62  H62  H 0 1 N N N N N N 22.853 -8.599  25.364 -9.790 -1.300 -0.655 HZ   ZAE 49 
MDL H11  H11  H 0 1 N N N N N N 14.212 -11.804 22.599 -3.561 -2.364 -2.953 H11  ZAE 50 
MDL H12  H12  H 0 1 N N N N N N 14.919 -10.318 21.879 -2.349 -2.036 -1.691 H12  ZAE 51 
MDL H13  H13  H 0 1 N N N N N N 15.754 -11.897 21.683 -3.942 -2.695 -1.246 H13  ZAE 52 
MDL H18  H18  H 0 1 N N N N N N 17.297 -6.429  21.857 -0.600 1.911  1.307  HA   PRO 53 
MDL H151 H151 H 0 0 N N N N N N 18.939 -6.115  20.218 -0.041 1.480  3.527  HB2  PRO 54 
MDL H152 H152 H 0 0 N N N N N N 18.276 -7.448  19.215 0.021  -0.293 3.259  HB3  PRO 55 
MDL H121 H121 H 0 0 N N N N N N 20.386 -7.504  21.338 -2.447 1.488  3.669  HG2  PRO 56 
MDL H122 H122 H 0 0 N N N N N N 20.255 -8.439  19.828 -2.073 -0.093 4.432  HG3  PRO 57 
MDL H111 H111 H 0 0 N N N N N N 19.622 -9.523  22.291 -3.720 -0.024 2.288  HD2  PRO 58 
MDL H112 H112 H 0 0 N N N N N N 18.827 -10.050 20.796 -2.470 -1.301 2.391  HD3  PRO 59 
MDL HN3  HN3  H 0 1 N N N N N N 15.878 -5.359  20.837 1.948  1.116  1.643  HN3  01C 60 
MDL H25  H25  H 0 1 N N N N N N 13.838 -6.892  19.247 2.429  -0.570 -0.693 H25  01C 61 
MDL H261 H261 H 0 0 N N N N N N 13.813 -4.338  20.938 4.313  0.886  1.216  H261 01C 62 
MDL H262 H262 H 0 0 N N N N N N 12.493 -4.729  19.787 4.835  -0.011 -0.230 H262 01C 63 
MDL H30  H30  H 0 1 N N N N N N 12.719 -8.002  20.359 4.422  1.135  -2.574 H30  01C 64 
MDL HN33 HN33 H 0 0 N N N N N N 11.218 -8.701  22.316 3.644  3.451  -3.295 HN33 01C 65 
MDL H34  H34  H 0 1 N N N N N N 10.078 -7.429  24.685 2.426  5.757  -2.086 H34  01C 66 
MDL H35  H35  H 0 1 N N N N N N 10.097 -5.295  25.964 1.600  6.544  0.086  H35  01C 67 
MDL H36  H36  H 0 1 N N N N N N 11.465 -3.358  25.157 1.731  5.099  2.071  H36  01C 68 
MDL H37  H37  H 0 1 N N N N N N 12.710 -3.607  23.013 2.688  2.856  1.910  H37  01C 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MDL C1  N2   SING N N 1  
MDL C1  H11  SING N N 2  
MDL C1  H12  SING N N 3  
MDL C1  H13  SING N N 4  
MDL N2  C6   SING N N 5  
MDL N2  HN2  SING N N 6  
MDL C6  C7   SING N N 7  
MDL C6  C55  SING N N 8  
MDL C6  H6   SING N N 9  
MDL C7  N8   SING N N 10 
MDL C7  O9   DOUB N N 11 
MDL N8  C11  SING N N 12 
MDL N8  C18  SING N N 13 
MDL C11 C12  SING N N 14 
MDL C11 H111 SING N N 15 
MDL C11 H112 SING N N 16 
MDL C12 C15  SING N N 17 
MDL C12 H121 SING N N 18 
MDL C12 H122 SING N N 19 
MDL C15 C18  SING N N 20 
MDL C15 H151 SING N N 21 
MDL C15 H152 SING N N 22 
MDL C18 C21  SING N N 23 
MDL C18 H18  SING N N 24 
MDL C21 N23  SING N N 25 
MDL C21 O24  DOUB N N 26 
MDL N23 C25  SING N N 27 
MDL N23 HN3  SING N N 28 
MDL C25 C26  SING N N 29 
MDL C25 C44  SING N N 30 
MDL C25 H25  SING N N 31 
MDL C26 C27  SING N N 32 
MDL C26 H261 SING N N 33 
MDL C26 H262 SING N N 34 
MDL C27 C30  DOUB Y N 35 
MDL C27 C31  SING Y N 36 
MDL C30 N33  SING Y N 37 
MDL C30 H30  SING N N 38 
MDL C31 C32  DOUB Y N 39 
MDL C31 C37  SING Y N 40 
MDL C32 N33  SING Y N 41 
MDL C32 C34  SING Y N 42 
MDL N33 HN33 SING N N 43 
MDL C34 C35  DOUB Y N 44 
MDL C34 H34  SING N N 45 
MDL C35 C36  SING Y N 46 
MDL C35 H35  SING N N 47 
MDL C36 C37  DOUB Y N 48 
MDL C36 H36  SING N N 49 
MDL C37 H37  SING N N 50 
MDL C44 O46  DOUB N N 51 
MDL C44 C47  SING N N 52 
MDL C47 F48  SING N N 53 
MDL C47 F49  SING N N 54 
MDL C47 C50  SING N N 55 
MDL C50 F51  SING N N 56 
MDL C50 F52  SING N N 57 
MDL C50 F53  SING N N 58 
MDL C55 C57  SING N N 59 
MDL C55 H551 SING N N 60 
MDL C55 H552 SING N N 61 
MDL C57 C60  DOUB Y N 62 
MDL C57 C64  SING Y N 63 
MDL C60 C61  SING Y N 64 
MDL C60 H60  SING N N 65 
MDL C61 C62  DOUB Y N 66 
MDL C61 H61  SING N N 67 
MDL C62 C63  SING Y N 68 
MDL C62 H62  SING N N 69 
MDL C63 C64  DOUB Y N 70 
MDL C63 H63  SING N N 71 
MDL C64 H64  SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MDL SMILES           ACDLabs              12.01 "O=C(NC(C(=O)C(F)(F)C(F)(F)F)Cc2c1ccccc1nc2)C4N(C(=O)C(NC)Cc3ccccc3)CCC4"                                                                                                                                                
MDL SMILES_CANONICAL CACTVS               3.370 "CN[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](Cc3c[nH]c4ccccc34)C(=O)C(F)(F)C(F)(F)F"                                                                                                                                  
MDL SMILES           CACTVS               3.370 "CN[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](Cc3c[nH]c4ccccc34)C(=O)C(F)(F)C(F)(F)F"                                                                                                                                      
MDL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](Cc3c[nH]c4c3cccc4)C(=O)C(C(F)(F)F)(F)F"                                                                                                                                  
MDL SMILES           "OpenEye OEToolkits" 1.7.0 "CNC(Cc1ccccc1)C(=O)N2CCCC2C(=O)NC(Cc3c[nH]c4c3cccc4)C(=O)C(C(F)(F)F)(F)F"                                                                                                                                               
MDL InChI            InChI                1.03  "InChI=1S/C28H29F5N4O3/c1-34-22(14-17-8-3-2-4-9-17)26(40)37-13-7-12-23(37)25(39)36-21(24(38)27(29,30)28(31,32)33)15-18-16-35-20-11-6-5-10-19(18)20/h2-6,8-11,16,21-23,34-35H,7,12-15H2,1H3,(H,36,39)/t21-,22+,23-/m0/s1" 
MDL InChIKey         InChI                1.03  WFJABZVISMTOSO-ZRBLBEILSA-N                                                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MDL "SYSTEMATIC NAME" ACDLabs              12.01 "N-methyl-D-phenylalanyl-N-[(2S)-4,4,5,5,5-pentafluoro-1-(1H-indol-3-yl)-3-oxopentan-2-yl]-L-prolinamide"                                      
MDL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-1-[(2R)-2-(methylamino)-3-phenyl-propanoyl]-N-[(2S)-4,4,5,5,5-pentafluoro-1-(1H-indol-3-yl)-3-oxo-pentan-2-yl]pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MDL "Create component"         1999-07-08 RCSB 
MDL "Modify subcomponent list" 2011-02-22 RCSB 
MDL "Modify descriptor"        2011-06-04 RCSB 
MDL "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MDL 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C44 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
