data_F5L
# 
_chem_comp.id                                    F5L 
_chem_comp.name                                  "(1R,2S)-1-hydroxy-2-{[N-({[7-(2-methylpropanoyl)-7-azaspiro[3.5]nonan-2-yl]oxy}carbonyl)-L-leucyl]amino}-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H44 N4 O9 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.714 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F5L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7T3Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F5L C02 C1  C 0 1 N N N N N N -13.146 -12.317 -8.786  -1.056  -1.609 0.584  C02 F5L 1  
F5L C04 C2  C 0 1 N N S N N N -11.967 -10.038 -8.618  1.282   -1.034 0.211  C04 F5L 2  
F5L C05 C3  C 0 1 N N N N N N -10.507 -9.473  -8.815  1.969   -2.399 0.130  C05 F5L 3  
F5L C06 C4  C 0 1 N N N N N N -9.471  -10.049 -7.783  3.310   -2.339 0.863  C06 F5L 4  
F5L C07 C5  C 0 1 N N N N N N -8.041  -9.559  -8.065  3.065   -2.134 2.360  C07 F5L 5  
F5L C08 C6  C 0 1 N N N N N N -9.876  -9.763  -6.312  4.069   -3.650 0.646  C08 F5L 6  
F5L C09 C7  C 0 1 N N N N N N -12.942 -9.282  -9.608  2.019   -0.049 -0.659 C09 F5L 7  
F5L C11 C8  C 0 1 N N S N N N -15.018 -7.891  -10.256 3.860   1.503  -1.037 C11 F5L 8  
F5L C12 C9  C 0 1 N N N N N N -16.511 -8.231  -9.868  4.792   2.305  -0.127 C12 F5L 9  
F5L C13 C10 C 0 1 N N S N N N -16.798 -9.755  -9.854  3.965   3.037  0.932  C13 F5L 10 
F5L C14 C11 C 0 1 N N N N N N -18.116 -10.068 -9.164  3.313   2.048  1.872  C14 F5L 11 
F5L C16 C12 C 0 1 N N N N N N -18.163 -11.294 -11.151 5.140   2.909  3.018  C16 F5L 12 
F5L C17 C13 C 0 1 N N N N N N -17.041 -10.261 -11.289 4.882   3.882  1.846  C17 F5L 13 
F5L C19 C14 C 0 1 N N R N N N -14.839 -6.326  -10.254 4.672   0.871  -2.170 C19 F5L 14 
F5L C23 C15 C 0 1 N N N N N N -14.081 -14.584 -8.797  -3.319  -2.116 1.148  C23 F5L 15 
F5L C24 C16 C 0 1 N N N N N N -13.439 -16.028 -8.680  -4.543  -2.778 0.492  C24 F5L 16 
F5L C25 C17 C 0 1 N N N N N N -14.674 -16.711 -9.416  -5.190  -1.387 0.486  C25 F5L 17 
F5L C26 C18 C 0 1 N N N N N N -14.070 -17.714 -10.411 -4.889  -0.580 -0.776 C26 F5L 18 
F5L C27 C19 C 0 1 N N N N N N -15.096 -18.601 -11.195 -5.391  0.856  -0.586 C27 F5L 19 
F5L C29 C20 C 0 1 N N N N N N -16.343 -20.718 -10.248 -7.740  1.477  -0.868 C29 F5L 20 
F5L C30 C21 C 0 1 N N N N N N -15.698 -21.823 -11.172 -9.161  1.518  -0.369 C30 F5L 21 
F5L C31 C22 C 0 1 N N N N N N -16.495 -22.099 -12.478 -9.853  2.773  -0.905 C31 F5L 22 
F5L C32 C23 C 0 1 N N N N N N -15.459 -23.149 -10.422 -9.909  0.276  -0.856 C32 F5L 23 
F5L C34 C24 C 0 1 N N N N N N -16.737 -18.306 -9.365  -7.165  0.038  1.024  C34 F5L 24 
F5L C35 C25 C 0 1 N N N N N N -15.777 -17.346 -8.574  -6.675  -1.404 0.844  C35 F5L 25 
F5L C36 C26 C 0 1 N N N N N N -15.062 -15.236 -9.844  -4.280  -1.034 1.669  C36 F5L 26 
F5L N03 N1  N 0 1 N N N N N N -11.963 -11.527 -8.820  -0.102  -1.155 -0.253 N03 F5L 27 
F5L N10 N2  N 0 1 N N N N N N -14.080 -8.495  -9.260  3.207   0.448  -0.258 N10 F5L 28 
F5L N15 N3  N 0 1 N N N N N N -18.930 -10.976 -9.912  3.988   2.000  3.033  N15 F5L 29 
F5L N28 N4  N 0 1 N N N N N N -16.052 -19.309 -10.273 -6.798  0.814  -0.168 N28 F5L 30 
F5L O01 O1  O 0 1 N N N N N N -14.182 -11.895 -8.233  -0.754  -2.003 1.693  O01 F5L 31 
F5L O18 O2  O 0 1 N N N N N N -18.508 -9.641  -8.067  2.325   1.393  1.615  O18 F5L 32 
F5L O20 O3  O 0 1 N N N N N N -13.550 -6.107  -10.882 3.788   0.219  -3.083 O20 F5L 33 
F5L O21 O4  O 0 1 N N N N N N -12.758 -9.467  -10.840 1.544   0.298  -1.720 O21 F5L 34 
F5L O22 O5  O 0 1 N N N N N N -13.234 -13.592 -9.395  -2.345  -1.620 0.193  O22 F5L 35 
F5L O33 O6  O 0 1 N N N N N N -17.182 -21.130 -9.417  -7.443  2.040  -1.901 O33 F5L 36 
F5L H1  H1  H 0 1 N N N N N N -12.285 -9.815  -7.589  1.290   -0.684 1.243  H1  F5L 37 
F5L H2  H2  H 0 1 N N N N N N -10.168 -9.729  -9.830  1.334   -3.153 0.595  H2  F5L 38 
F5L H3  H3  H 0 1 N N N N N N -10.538 -8.379  -8.704  2.137   -2.659 -0.915 H3  F5L 39 
F5L H4  H4  H 0 1 N N N N N N -9.471  -11.142 -7.910  3.900   -1.509 0.475  H4  F5L 40 
F5L H5  H5  H 0 1 N N N N N N -7.353  -9.986  -7.321  4.020   -2.019 2.872  H5  F5L 41 
F5L H6  H6  H 0 1 N N N N N N -7.736  -9.879  -9.072  2.462   -1.239 2.510  H6  F5L 42 
F5L H7  H7  H 0 1 N N N N N N -8.011  -8.461  -8.004  2.538   -2.999 2.763  H7  F5L 43 
F5L H8  H8  H 0 1 N N N N N N -9.120  -10.186 -5.634  4.244   -3.796 -0.420 H8  F5L 44 
F5L H9  H9  H 0 1 N N N N N N -9.942  -8.676  -6.155  5.025   -3.607 1.168  H9  F5L 45 
F5L H10 H10 H 0 1 N N N N N N -10.853 -10.224 -6.105  3.479   -4.480 1.035  H10 F5L 46 
F5L H11 H11 H 0 1 N N N N N N -14.808 -8.279  -11.264 3.104   2.165  -1.458 H11 F5L 47 
F5L H12 H12 H 0 1 N N N N N N -16.714 -7.826  -8.866  5.493   1.629  0.363  H12 F5L 48 
F5L H13 H13 H 0 1 N N N N N N -17.181 -7.754  -10.599 5.344   3.032  -0.723 H13 F5L 49 
F5L H14 H14 H 0 1 N N N N N N -15.967 -10.301 -9.384  3.212   3.667  0.458  H14 F5L 50 
F5L H15 H15 H 0 1 N N N N N N -18.828 -11.242 -12.026 6.060   2.349  2.848  H15 F5L 51 
F5L H16 H16 H 0 1 N N N N N N -17.734 -12.304 -11.076 5.201   3.457  3.959  H16 F5L 52 
F5L H17 H17 H 0 1 N N N N N N -16.132 -10.728 -11.695 5.813   4.136  1.338  H17 F5L 53 
F5L H18 H18 H 0 1 N N N N N N -17.353 -9.434  -11.944 4.370   4.780  2.191  H18 F5L 54 
F5L H19 H19 H 0 1 N N N N N N -15.530 -5.599  -9.802  5.229   1.648  -2.694 H19 F5L 55 
F5L H21 H21 H 0 1 N N N N N N -14.590 -14.270 -7.874  -2.869  -2.717 1.938  H21 F5L 56 
F5L H22 H22 H 0 1 N N N N N N -13.304 -16.366 -7.642  -4.345  -3.172 -0.505 H22 F5L 57 
F5L H23 H23 H 0 1 N N N N N N -12.490 -16.132 -9.226  -5.051  -3.495 1.138  H23 F5L 58 
F5L H24 H24 H 0 1 N N N N N N -13.403 -18.385 -9.850  -3.814  -0.570 -0.954 H24 F5L 59 
F5L H25 H25 H 0 1 N N N N N N -13.483 -17.146 -11.148 -5.396  -1.034 -1.628 H25 F5L 60 
F5L H26 H26 H 0 1 N N N N N N -15.672 -17.959 -11.878 -4.797  1.352  0.182  H26 F5L 61 
F5L H27 H27 H 0 1 N N N N N N -14.543 -19.352 -11.778 -5.305  1.401  -1.526 H27 F5L 62 
F5L H28 H28 H 0 1 N N N N N N -14.711 -21.443 -11.475 -9.163  1.540  0.721  H28 F5L 63 
F5L H29 H29 H 0 1 N N N N N N -16.665 -21.152 -13.012 -9.931  2.710  -1.990 H29 F5L 64 
F5L H30 H30 H 0 1 N N N N N N -15.921 -22.784 -13.120 -10.851 2.850  -0.474 H30 F5L 65 
F5L H31 H31 H 0 1 N N N N N N -17.463 -22.557 -12.227 -9.271  3.654  -0.633 H31 F5L 66 
F5L H32 H32 H 0 1 N N N N N N -14.895 -22.952 -9.498  -9.416  -0.618 -0.474 H32 F5L 67 
F5L H33 H33 H 0 1 N N N N N N -16.427 -23.607 -10.170 -10.937 0.306  -0.494 H33 F5L 68 
F5L H34 H34 H 0 1 N N N N N N -14.885 -23.834 -11.063 -9.907  0.254  -1.945 H34 F5L 69 
F5L H35 H35 H 0 1 N N N N N N -17.402 -17.686 -9.985  -8.248  0.043  1.144  H35 F5L 70 
F5L H36 H36 H 0 1 N N N N N N -17.336 -18.866 -8.632  -6.697  0.475  1.906  H36 F5L 71 
F5L H37 H37 H 0 1 N N N N N N -15.302 -17.924 -7.768  -7.238  -1.883 0.042  H37 F5L 72 
F5L H38 H38 H 0 1 N N N N N N -16.383 -16.538 -8.138  -6.820  -1.957 1.772  H38 F5L 73 
F5L H39 H39 H 0 1 N N N N N N -14.805 -15.002 -10.888 -4.715  -1.267 2.641  H39 F5L 74 
F5L H40 H40 H 0 1 N N N N N N -16.119 -14.992 -9.663  -3.870  -0.025 1.619  H40 F5L 75 
F5L H41 H41 H 0 1 N N N N N N -11.089 -11.984 -8.986  -0.332  -0.909 -1.163 H41 F5L 76 
F5L H42 H42 H 0 1 N N N N N N -14.262 -8.337  -8.289  3.628   0.107  0.546  H42 F5L 77 
F5L H43 H43 H 0 1 N N N N N N -19.831 -11.327 -9.656  3.745   1.437  3.785  H43 F5L 78 
F5L H44 H44 H 0 1 N N N N N N -13.369 -5.175  -10.918 3.260   -0.485 -2.684 H44 F5L 79 
F5L S1  S1  S 0 1 N Y N N N N ?       ?       ?       5.831   -0.342 -1.480 S1  F5L 80 
F5L O1  O7  O 0 1 N N N N N N ?       ?       ?       5.129   -1.462 -0.959 O1  F5L 81 
F5L O3  O8  O 0 1 N N N N N N ?       ?       ?       6.570   -0.892 -2.691 O3  F5L 82 
F5L O2  O9  O 0 1 N N N N N N ?       ?       ?       6.840   0.309  -0.719 O2  F5L 83 
F5L H20 H20 H 0 1 N N N N N N ?       ?       ?       7.234   -1.562 -2.475 H20 F5L 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F5L C31 C30 SING N N 1  
F5L C17 C16 SING N N 2  
F5L C17 C13 SING N N 3  
F5L C27 C26 SING N N 4  
F5L C27 N28 SING N N 5  
F5L C30 C32 SING N N 6  
F5L C30 C29 SING N N 7  
F5L C16 N15 SING N N 8  
F5L O20 C19 SING N N 9  
F5L O21 C09 DOUB N N 10 
F5L C26 C25 SING N N 11 
F5L N28 C29 SING N N 12 
F5L N28 C34 SING N N 13 
F5L C11 C19 SING N N 14 
F5L C11 C12 SING N N 15 
F5L C11 N10 SING N N 16 
F5L C29 O33 DOUB N N 17 
F5L N15 C14 SING N N 18 
F5L C12 C13 SING N N 19 
F5L C13 C14 SING N N 20 
F5L C36 C25 SING N N 21 
F5L C36 C23 SING N N 22 
F5L C09 N10 SING N N 23 
F5L C09 C04 SING N N 24 
F5L C25 C24 SING N N 25 
F5L C25 C35 SING N N 26 
F5L O22 C23 SING N N 27 
F5L O22 C02 SING N N 28 
F5L C34 C35 SING N N 29 
F5L C14 O18 DOUB N N 30 
F5L N03 C02 SING N N 31 
F5L N03 C04 SING N N 32 
F5L C05 C04 SING N N 33 
F5L C05 C06 SING N N 34 
F5L C23 C24 SING N N 35 
F5L C02 O01 DOUB N N 36 
F5L C07 C06 SING N N 37 
F5L C06 C08 SING N N 38 
F5L C04 H1  SING N N 39 
F5L C05 H2  SING N N 40 
F5L C05 H3  SING N N 41 
F5L C06 H4  SING N N 42 
F5L C07 H5  SING N N 43 
F5L C07 H6  SING N N 44 
F5L C07 H7  SING N N 45 
F5L C08 H8  SING N N 46 
F5L C08 H9  SING N N 47 
F5L C08 H10 SING N N 48 
F5L C11 H11 SING N N 49 
F5L C12 H12 SING N N 50 
F5L C12 H13 SING N N 51 
F5L C13 H14 SING N N 52 
F5L C16 H15 SING N N 53 
F5L C16 H16 SING N N 54 
F5L C17 H17 SING N N 55 
F5L C17 H18 SING N N 56 
F5L C19 H19 SING N N 57 
F5L C23 H21 SING N N 58 
F5L C24 H22 SING N N 59 
F5L C24 H23 SING N N 60 
F5L C26 H24 SING N N 61 
F5L C26 H25 SING N N 62 
F5L C27 H26 SING N N 63 
F5L C27 H27 SING N N 64 
F5L C30 H28 SING N N 65 
F5L C31 H29 SING N N 66 
F5L C31 H30 SING N N 67 
F5L C31 H31 SING N N 68 
F5L C32 H32 SING N N 69 
F5L C32 H33 SING N N 70 
F5L C32 H34 SING N N 71 
F5L C34 H35 SING N N 72 
F5L C34 H36 SING N N 73 
F5L C35 H37 SING N N 74 
F5L C35 H38 SING N N 75 
F5L C36 H39 SING N N 76 
F5L C36 H40 SING N N 77 
F5L N03 H41 SING N N 78 
F5L N10 H42 SING N N 79 
F5L N15 H43 SING N N 80 
F5L O20 H44 SING N N 81 
F5L C19 S1  SING N N 82 
F5L S1  O1  DOUB N N 83 
F5L S1  O3  SING N N 84 
F5L S1  O2  DOUB N N 85 
F5L O3  H20 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F5L SMILES           ACDLabs              12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OC1CC2(CCN(CC2)C(=O)C(C)C)C1)C(O)S(=O)(=O)O"                                                                                                                                                            
F5L InChI            InChI                1.03  "InChI=1S/C26H44N4O9S/c1-15(2)11-19(22(32)28-20(24(34)40(36,37)38)12-17-5-8-27-21(17)31)29-25(35)39-18-13-26(14-18)6-9-30(10-7-26)23(33)16(3)4/h15-20,24,34H,5-14H2,1-4H3,(H,27,31)(H,28,32)(H,29,35)(H,36,37,38)/t17-,19-,20-,24+/m0/s1" 
F5L InChIKey         InChI                1.03  SQVQHYGKQGMSJR-TYZOXTDXSA-N                                                                                                                                                                                                               
F5L SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC1CC2(CCN(CC2)C(=O)C(C)C)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                        
F5L SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC1CC2(CCN(CC2)C(=O)C(C)C)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                              
F5L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CC3(C2)CCN(CC3)C(=O)C(C)C"                                                                                                                                             
F5L SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CC3(C2)CCN(CC3)C(=O)C(C)C"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F5L "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-1-hydroxy-2-{[N-({[7-(2-methylpropanoyl)-7-azaspiro[3.5]nonan-2-yl]oxy}carbonyl)-L-leucyl]amino}-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                   
F5L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[7-(2-methylpropanoyl)-7-azaspiro[3.5]nonan-2-yl]oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F5L "Create component" 2021-12-14 RCSB 
F5L "Initial release"  2021-12-22 RCSB 
F5L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            F5L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
