data_F3L
# 
_chem_comp.id                                    F3L 
_chem_comp.name                                  "4-[(3~{S},4~{S})-4-(aminomethyl)-1-(5-chloranylpyridin-2-yl)sulfonyl-4-oxidanyl-pyrrolidin-3-yl]oxy-2-fluoranyl-benzenecarbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H16 Cl F N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "4-[(3S,4S)-4-(aminomethyl)-1-(5-chloropyridin-2-yl)sulfonyl-4-hydroxypyrrolidin-3-yl]oxy-2-fluorobenzonitrile; CHEMBL4550510" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-27 
_chem_comp.pdbx_modified_date                    2024-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.850 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F3L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JU5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F3L C10  C1  C  0 1 Y N N N N N 137.175 167.091 142.698 -3.085 0.195  0.600  C10  F3L 1  
F3L C13  C2  C  0 1 Y N N N N N 139.798 167.873 143.991 -4.060 2.499  -0.468 C13  F3L 2  
F3L C15  C3  C  0 1 Y N N N N N 139.604 166.463 143.510 -4.401 1.292  -1.062 C15  F3L 3  
F3L C20  C4  C  0 1 N N S N N N 136.638 168.852 139.009 0.644  -2.918 -0.570 C20  F3L 4  
F3L C22  C5  C  0 1 N N N N N N 137.494 170.028 139.678 1.189  -3.231 -1.965 C22  F3L 5  
F3L C24  C6  C  0 1 Y N N N N N 140.146 168.364 139.897 3.143  1.002  -1.689 C24  F3L 6  
F3L C26  C7  C  0 1 Y N N N N N 142.583 167.319 140.296 4.799  1.865  -0.177 C26  F3L 7  
F3L C01  C8  C  0 1 Y N N N N N 141.967 165.931 140.465 4.358  0.977  0.812  C01  F3L 8  
F3L C03  C9  C  0 1 Y N N N N N 140.449 165.760 140.353 3.316  0.112  0.543  C03  F3L 9  
F3L C04  C10 C  0 1 Y N N N N N 139.534 166.969 140.059 2.708  0.122  -0.705 C04  F3L 10 
F3L C06  C11 C  0 1 N N S N N N 137.417 167.499 139.021 1.366  -1.690 0.046  C06  F3L 11 
F3L C07  C12 C  0 1 N N N N N N 136.226 166.469 139.268 0.313  -1.125 1.023  C07  F3L 12 
F3L C12  C13 C  0 1 Y N N N N N 138.670 168.899 143.824 -3.238 2.493  0.645  C12  F3L 13 
F3L C16  C14 C  0 1 Y N N N N N 138.305 166.061 142.863 -3.901 0.122  -0.513 C16  F3L 14 
F3L C19  C15 C  0 1 N N N N N N 135.500 168.631 139.739 -0.818 -2.413 -0.646 C19  F3L 15 
F3L C25  C16 C  0 1 Y N N N N N 141.673 168.542 140.010 4.181  1.869  -1.432 C25  F3L 16 
F3L C27  C17 C  0 1 N N N N N N 144.103 167.482 140.415 5.878  2.765  0.095  C27  F3L 17 
F3L F02  F1  F  0 1 N N N N N N 142.759 164.845 140.717 4.950  0.968  2.026  F02  F3L 18 
F3L N08  N1  N  0 1 N N N N N N 135.552 167.072 140.245 -1.002 -1.603 0.573  N08  F3L 19 
F3L N11  N2  N  0 1 Y N N N N N 137.370 168.489 143.179 -2.782 1.359  1.140  N11  F3L 20 
F3L N23  N3  N  0 1 N N N N N N 136.872 171.347 139.335 0.405  -4.319 -2.564 N23  F3L 21 
F3L N28  N4  N  0 1 N N N N N N 145.220 167.594 140.498 6.735  3.480  0.311  N28  F3L 22 
F3L O05  O1  O  0 1 N N N N N N 138.122 166.729 139.983 1.684  -0.731 -0.965 O05  F3L 23 
F3L O17  O2  O  0 1 N N N N N N 134.419 167.107 142.627 -2.150 -0.984 2.668  O17  F3L 24 
F3L O18  O3  O  0 1 N N N N N N 135.358 165.138 142.028 -3.334 -2.329 0.926  O18  F3L 25 
F3L O21  O4  O  0 1 N N N N N N 136.312 169.183 137.730 0.750  -4.057 0.286  O21  F3L 26 
F3L S09  S1  S  0 1 N N N N N N 135.571 166.581 141.895 -2.449 -1.287 1.312  S09  F3L 27 
F3L CL14 CL1 CL 0 0 N N N N N N 141.344 168.346 144.757 -4.657 3.996  -1.112 CL14 F3L 28 
F3L H1   H1  H  0 1 N N N N N N 140.396 165.738 143.628 -5.041 1.266  -1.932 H1   F3L 29 
F3L H2   H2  H  0 1 N N N N N N 137.505 169.899 140.770 1.115  -2.342 -2.592 H2   F3L 30 
F3L H3   H3  H  0 1 N N N N N N 138.525 169.997 139.295 2.233  -3.536 -1.887 H3   F3L 31 
F3L H4   H4  H  0 1 N N N N N N 139.512 169.217 139.705 2.669  1.002  -2.659 H4   F3L 32 
F3L H5   H5  H  0 1 N N N N N N 140.012 164.781 140.481 2.974  -0.573 1.305  H5   F3L 33 
F3L H6   H6  H  0 1 N N N N N N 137.821 167.320 138.014 2.263  -1.999 0.582  H6   F3L 34 
F3L H7   H7  H  0 1 N N N N N N 135.606 166.348 138.367 0.513  -1.485 2.032  H7   F3L 35 
F3L H8   H8  H  0 1 N N N N N N 136.604 165.487 139.588 0.338  -0.035 1.004  H8   F3L 36 
F3L H9   H9  H  0 1 N N N N N N 138.807 169.914 144.168 -2.967 3.427  1.114  H9   F3L 37 
F3L H10  H10 H  0 1 N N N N N N 138.167 165.048 142.514 -4.146 -0.835 -0.949 H10  F3L 38 
F3L H11  H11 H  0 1 N N N N N N 135.469 169.309 140.605 -0.962 -1.799 -1.535 H11  F3L 39 
F3L H12  H12 H  0 1 N N N N N N 134.611 168.796 139.112 -1.510 -3.255 -0.649 H12  F3L 40 
F3L H13  H13 H  0 1 N N N N N N 142.111 169.522 139.890 4.518  2.552  -2.198 H13  F3L 41 
F3L H14  H14 H  0 1 N N N N N N 137.404 172.085 139.751 -0.577 -4.087 -2.588 H14  F3L 42 
F3L H15  H15 H  0 1 N N N N N N 136.862 171.462 138.342 0.745  -4.545 -3.486 H15  F3L 43 
F3L H17  H17 H  0 1 N N N N N N 135.838 170.006 137.726 0.314  -4.849 -0.057 H17  F3L 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F3L O21 C20  SING N N 1  
F3L C20 C06  SING N N 2  
F3L C20 C22  SING N N 3  
F3L C20 C19  SING N N 4  
F3L C06 C07  SING N N 5  
F3L C06 O05  SING N N 6  
F3L C07 N08  SING N N 7  
F3L N23 C22  SING N N 8  
F3L C19 N08  SING N N 9  
F3L C24 C25  DOUB Y N 10 
F3L C24 C04  SING Y N 11 
F3L O05 C04  SING N N 12 
F3L C25 C26  SING Y N 13 
F3L C04 C03  DOUB Y N 14 
F3L N08 S09  SING N N 15 
F3L C26 C27  SING N N 16 
F3L C26 C01  DOUB Y N 17 
F3L C03 C01  SING Y N 18 
F3L C27 N28  TRIP N N 19 
F3L C01 F02  SING N N 20 
F3L S09 O18  DOUB N N 21 
F3L S09 O17  DOUB N N 22 
F3L S09 C10  SING N N 23 
F3L C10 C16  DOUB Y N 24 
F3L C10 N11  SING Y N 25 
F3L C16 C15  SING Y N 26 
F3L N11 C12  DOUB Y N 27 
F3L C15 C13  DOUB Y N 28 
F3L C12 C13  SING Y N 29 
F3L C13 CL14 SING N N 30 
F3L C15 H1   SING N N 31 
F3L C22 H2   SING N N 32 
F3L C22 H3   SING N N 33 
F3L C24 H4   SING N N 34 
F3L C03 H5   SING N N 35 
F3L C06 H6   SING N N 36 
F3L C07 H7   SING N N 37 
F3L C07 H8   SING N N 38 
F3L C12 H9   SING N N 39 
F3L C16 H10  SING N N 40 
F3L C19 H11  SING N N 41 
F3L C19 H12  SING N N 42 
F3L C25 H13  SING N N 43 
F3L N23 H14  SING N N 44 
F3L N23 H15  SING N N 45 
F3L O21 H17  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F3L InChI            InChI                1.06  "InChI=1S/C17H16ClFN4O4S/c18-12-2-4-16(22-7-12)28(25,26)23-8-15(17(24,9-21)10-23)27-13-3-1-11(6-20)14(19)5-13/h1-5,7,15,24H,8-10,21H2/t15-,17-/m0/s1" 
F3L InChIKey         InChI                1.06  IQEGRQYYSXOUJI-RDJZCZTQSA-N                                                                                                                           
F3L SMILES_CANONICAL CACTVS               3.385 "NC[C@]1(O)CN(C[C@@H]1Oc2ccc(C#N)c(F)c2)[S](=O)(=O)c3ccc(Cl)cn3"                                                                                      
F3L SMILES           CACTVS               3.385 "NC[C]1(O)CN(C[CH]1Oc2ccc(C#N)c(F)c2)[S](=O)(=O)c3ccc(Cl)cn3"                                                                                         
F3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1O[C@H]2CN(C[C@]2(CN)O)S(=O)(=O)c3ccc(cn3)Cl)F)C#N"                                                                                         
F3L SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OC2CN(CC2(CN)O)S(=O)(=O)c3ccc(cn3)Cl)F)C#N"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           F3L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[(3~{S},4~{S})-4-(aminomethyl)-1-(5-chloranylpyridin-2-yl)sulfonyl-4-oxidanyl-pyrrolidin-3-yl]oxy-2-fluoranyl-benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F3L "Create component" 2023-06-27 PDBC 
F3L "Initial release"  2024-05-08 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 F3L "4-[(3S,4S)-4-(aminomethyl)-1-(5-chloropyridin-2-yl)sulfonyl-4-hydroxypyrrolidin-3-yl]oxy-2-fluorobenzonitrile" PUBCHEM ? 
2 F3L CHEMBL4550510                                                                                                   PUBCHEM ? 
# 
