data_CFL
#

_chem_comp.id                                   CFL
_chem_comp.name                                 "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C9 H13 F N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DC
_chem_comp.pdbx_synonyms                        "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-09-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.188
_chem_comp.one_letter_code                      C
_chem_comp.three_letter_code                    CFL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CFL  O3P     O3P   O  0  1  N  Y  N  3.753   9.812  -1.585  -5.158  -0.141   0.225  O3P     CFL   1  
CFL  P       P     P  0  1  N  N  N  4.389   9.581  -3.052  -4.058   1.015   0.011  P       CFL   2  
CFL  O1P     O1P   O  0  1  N  N  N  5.104  10.816  -3.438  -4.697   2.209  -0.859  O1P     CFL   3  
CFL  O2P     O2P   O  0  1  N  N  N  3.326   9.043  -3.925  -3.631   1.538   1.328  O2P     CFL   4  
CFL  "O5'"   O5*   O  0  1  N  N  N  5.481   8.413  -2.805  -2.785   0.407  -0.764  "O5'"   CFL   5  
CFL  "C5'"   C5*   C  0  1  N  N  N  6.836   8.711  -2.399  -2.195  -0.561   0.106  "C5'"   CFL   6  
CFL  "C4'"   C4*   C  0  1  N  N  R  7.646   7.427  -2.191  -0.972  -1.180  -0.574  "C4'"   CFL   7  
CFL  "O4'"   O4*   O  0  1  N  N  N  6.880   6.475  -1.451   0.067  -0.190  -0.739  "O4'"   CFL   8  
CFL  "C3'"   C3*   C  0  1  N  N  R  8.010   6.773  -3.522  -0.344  -2.265   0.329  "C3'"   CFL   9  
CFL  "O3'"   O3*   O  0  1  N  N  N  9.395   6.976  -3.841  -0.779  -3.565  -0.074  "O3'"   CFL  10  
CFL  "C2'"   C2*   C  0  1  N  N  S  7.701   5.314  -3.355   1.178  -2.108   0.102  "C2'"   CFL  11  
CFL  "C1'"   C1*   C  0  1  N  N  R  7.237   5.168  -1.908   1.287  -0.944  -0.908  "C1'"   CFL  12  
CFL  N1      N1    N  0  1  N  N  N  6.063   4.271  -1.799   2.450  -0.108  -0.600  N1      CFL  13  
CFL  C2      C2    C  0  1  N  N  N  6.253   2.994  -1.285   2.503   0.560   0.567  C2      CFL  14  
CFL  O2      O2    O  0  1  N  N  N  7.370   2.623  -0.932   1.579   0.462   1.358  O2      CFL  15  
CFL  N3      N3    N  0  1  N  N  N  5.169   2.176  -1.183   3.548   1.327   0.873  N3      CFL  16  
CFL  C4      C4    C  0  1  N  N  N  3.956   2.588  -1.569   4.566   1.452   0.032  C4      CFL  17  
CFL  N4      N4    N  0  1  N  N  N  2.921   1.769  -1.447   5.640   2.248   0.358  N4      CFL  18  
CFL  C5      C5    C  0  1  N  N  N  3.756   3.892  -2.099   4.538   0.770  -1.202  C5      CFL  19  
CFL  C6      C6    C  0  1  N  N  N  4.819   4.699  -2.196   3.472  -0.011  -1.496  C6      CFL  20  
CFL  F       F     F  0  1  N  N  N  6.721   4.932  -4.226   1.821  -1.780   1.300  F       CFL  21  
CFL  HO3P    HO3P  H  0  0  N  N  N  4.450   9.857  -0.941  -5.409  -0.454  -0.655  HO3P    CFL  22  
CFL  HO1P    HO1P  H  0  0  N  N  N  5.257  11.348  -2.666  -5.454   2.544  -0.361  HO1P    CFL  23  
CFL  "H5'1"  1H5*  H  0  0  N  N  N  7.318   9.314  -3.182  -2.922  -1.342   0.327  "H5'1"  CFL  24  
CFL  "H5'2"  2H5*  H  0  0  N  N  N  6.803   9.262  -1.447  -1.889  -0.077   1.034  "H5'2"  CFL  25  
CFL  "H4'"   H4*   H  0  1  N  N  N  8.560   7.711  -1.650  -1.250  -1.604  -1.539  "H4'"   CFL  26  
CFL  "H3'"   H3*   H  0  1  N  N  N  7.441   7.213  -4.354  -0.596  -2.086   1.374  "H3'"   CFL  27  
CFL  "HO3'"  HO3*  H  0  0  N  N  N  9.500   7.021  -4.784  -0.357  -4.198   0.522  "HO3'"  CFL  28  
CFL  "H2'"   H2*   H  0  1  N  N  N  8.572   4.677  -3.567   1.598  -3.022  -0.318  "H2'"   CFL  29  
CFL  "H1'"   H1*   H  0  1  N  N  N  8.043   4.727  -1.303   1.357  -1.329  -1.925  "H1'"   CFL  30  
CFL  HN41    1HN4  H  0  0  N  N  N  3.230   0.899  -1.062   5.654   2.719   1.206  HN41    CFL  31  
CFL  HN42    2HN4  H  0  0  N  N  N  1.979   1.987  -1.701   6.384   2.334  -0.257  HN42    CFL  32  
CFL  H5      H5    H  0  1  N  N  N  2.777   4.221  -2.414   5.359   0.861  -1.897  H5      CFL  33  
CFL  H6      H6    H  0  1  N  N  N  4.698   5.697  -2.590   3.429  -0.547  -2.432  H6      CFL  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CFL  O3P    P       SING  N  N   1  
CFL  O3P    HO3P    SING  N  N   2  
CFL  P      O1P     SING  N  N   3  
CFL  P      O2P     DOUB  N  N   4  
CFL  P      "O5'"   SING  N  N   5  
CFL  O1P    HO1P    SING  N  N   6  
CFL  "O5'"  "C5'"   SING  N  N   7  
CFL  "C5'"  "C4'"   SING  N  N   8  
CFL  "C5'"  "H5'1"  SING  N  N   9  
CFL  "C5'"  "H5'2"  SING  N  N  10  
CFL  "C4'"  "O4'"   SING  N  N  11  
CFL  "C4'"  "C3'"   SING  N  N  12  
CFL  "C4'"  "H4'"   SING  N  N  13  
CFL  "O4'"  "C1'"   SING  N  N  14  
CFL  "C3'"  "O3'"   SING  N  N  15  
CFL  "C3'"  "C2'"   SING  N  N  16  
CFL  "C3'"  "H3'"   SING  N  N  17  
CFL  "O3'"  "HO3'"  SING  N  N  18  
CFL  "C2'"  "C1'"   SING  N  N  19  
CFL  "C2'"  F       SING  N  N  20  
CFL  "C2'"  "H2'"   SING  N  N  21  
CFL  "C1'"  N1      SING  N  N  22  
CFL  "C1'"  "H1'"   SING  N  N  23  
CFL  N1     C2      SING  N  N  24  
CFL  N1     C6      SING  N  N  25  
CFL  C2     O2      DOUB  N  N  26  
CFL  C2     N3      SING  N  N  27  
CFL  N3     C4      DOUB  N  N  28  
CFL  C4     N4      SING  N  N  29  
CFL  C4     C5      SING  N  N  30  
CFL  N4     HN41    SING  N  N  31  
CFL  N4     HN42    SING  N  N  32  
CFL  C5     C6      DOUB  N  N  33  
CFL  C5     H5      SING  N  N  34  
CFL  C6     H6      SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CFL  SMILES            ACDLabs               10.04  "O=C1N=C(N)C=CN1C2OC(C(O)C2F)COP(=O)(O)O"  
CFL  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F"  
CFL  SMILES            CACTVS                3.341  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F"  
CFL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F"  
CFL  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)F"  
CFL  InChI             InChI                 1.03   "InChI=1S/C9H13FN3O7P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)13-2-1-5(11)12-9(13)15/h1-2,4,6-8,14H,3H2,(H2,11,12,15)(H2,16,17,18)/t4-,6+,7-,8-/m1/s1"  
CFL  InChIKey          InChI                 1.03   KTAATIGPZHTGOP-PXBUCIJWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CFL  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one"  
CFL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CFL  "Create component"   2006-09-07  RCSB  
CFL  "Modify descriptor"  2011-06-04  RCSB  
CFL  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CFL
_pdbx_chem_comp_synonyms.name        "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
