data_B5L
#

_chem_comp.id                                   B5L
_chem_comp.name                                 "N~1~,N~1~,N~1~-tris(3-azaniumylpropyl)butane-1,4-diaminium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H38 N5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N4-bis(aminopropyl)spermidine"
_chem_comp.pdbx_formal_charge                   5
_chem_comp.pdbx_initial_date                    2019-01-16
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       264.474
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    B5L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6J26
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B5L  C5   C1   C  0  1  N  N  N  74.299  69.368  16.631   0.889  -0.000  -0.762  C5   B5L   1  
B5L  C4   C2   C  0  1  N  N  N  75.506  70.318  16.547   2.101  -0.000   0.173  C4   B5L   2  
B5L  C3   C3   C  0  1  N  N  N  76.689  69.705  15.815   3.385  -0.000  -0.657  C3   B5L   3  
B5L  C2   C4   C  0  1  N  N  N  77.863  70.682  15.812   4.597  -0.000   0.278  C2   B5L   4  
B5L  N18  N1   N  1  1  N  N  N  76.323  68.518  20.738  -0.345  -4.897   0.036  N18  B5L   5  
B5L  C17  C5   C  0  1  N  N  N  75.705  67.982  19.519  -0.380  -3.698   0.883  C17  B5L   6  
B5L  C16  C6   C  0  1  N  N  N  74.202  68.196  19.495  -0.343  -2.449   0.001  C16  B5L   7  
B5L  C15  C7   C  0  1  N  N  N  73.776  69.592  19.030  -0.380  -1.199   0.883  C15  B5L   8  
B5L  N6   N2   N  1  1  N  N  N  73.257  69.754  17.632  -0.345   0.000   0.036  N6   B5L   9  
B5L  C11  C8   C  0  1  N  N  N  72.903  71.203  17.539  -0.380   1.199   0.883  C11  B5L  10  
B5L  C12  C9   C  0  1  N  N  N  72.554  71.747  16.144  -0.343   2.449   0.001  C12  B5L  11  
B5L  C13  C10  C  0  1  N  N  N  71.294  72.595  16.138  -0.380   3.698   0.883  C13  B5L  12  
B5L  N14  N3   N  1  1  N  N  N  70.705  72.621  14.794  -0.344   4.897   0.036  N14  B5L  13  
B5L  C7   C11  C  0  1  N  N  N  71.956  69.024  17.468  -1.508   0.000  -0.862  C7   B5L  14  
B5L  C8   C12  C  0  1  N  N  N  71.970  67.555  17.019  -2.793   0.000  -0.031  C8   B5L  15  
B5L  C9   C13  C  0  1  N  N  N  70.737  66.790  17.512  -4.004   0.000  -0.966  C9   B5L  16  
B5L  N10  N4   N  1  1  N  N  N  70.488  66.976  18.951  -5.238   0.000  -0.169  N10  B5L  17  
B5L  N1   N5   N  1  1  N  N  N  78.381  70.911  17.172   5.831  -0.000  -0.520  N1   B5L  18  
B5L  H1   H1   H  0  1  N  N  N  73.823  69.333  15.640   0.915   0.890  -1.390  H1   B5L  19  
B5L  H2   H2   H  0  1  N  N  N  74.671  68.367  16.895   0.915  -0.890  -1.390  H2   B5L  20  
B5L  H3   H3   H  0  1  N  N  N  75.821  70.577  17.569   2.074   0.890   0.802  H3   B5L  21  
B5L  H4   H4   H  0  1  N  N  N  75.198  71.231  16.015   2.074  -0.890   0.802  H4   B5L  22  
B5L  H5   H5   H  0  1  N  N  N  76.399  69.480  14.778   3.412  -0.890  -1.286  H5   B5L  23  
B5L  H6   H6   H  0  1  N  N  N  76.989  68.776  16.321   3.412   0.890  -1.286  H6   B5L  24  
B5L  H7   H7   H  0  1  N  N  N  78.669  70.269  15.188   4.570   0.890   0.906  H7   B5L  25  
B5L  H8   H8   H  0  1  N  N  N  77.528  71.642  15.391   4.570  -0.890   0.906  H8   B5L  26  
B5L  H9   H9   H  0  1  N  N  N  77.309  68.356  20.711  -0.369  -5.721   0.618  H9   B5L  27  
B5L  H10  H10  H  0  1  N  N  N  76.149  69.501  20.796  -1.144  -4.897  -0.581  H10  B5L  28  
B5L  H11  H11  H  0  1  N  N  N  75.932  68.063  21.538   0.502  -4.897  -0.512  H11  B5L  29  
B5L  H12  H12  H  0  1  N  N  N  75.910  66.903  19.463  -1.296  -3.698   1.475  H12  B5L  30  
B5L  H13  H13  H  0  1  N  N  N  76.148  68.485  18.647   0.483  -3.698   1.549  H13  B5L  31  
B5L  H14  H14  H  0  1  N  N  N  73.814  68.038  20.512   0.572  -2.449  -0.591  H14  B5L  32  
B5L  H15  H15  H  0  1  N  N  N  73.758  67.455  18.814  -1.206  -2.449  -0.665  H15  B5L  33  
B5L  H16  H16  H  0  1  N  N  N  74.653  70.249  19.129  -1.296  -1.199   1.475  H16  B5L  34  
B5L  H17  H17  H  0  1  N  N  N  72.983  69.934  19.712   0.483  -1.199   1.549  H17  B5L  35  
B5L  H18  H18  H  0  1  N  N  N  73.761  71.779  17.915  -1.295   1.199   1.475  H18  B5L  36  
B5L  H19  H19  H  0  1  N  N  N  72.033  71.375  18.190   0.483   1.199   1.549  H19  B5L  37  
B5L  H20  H20  H  0  1  N  N  N  72.408  70.896  15.462   0.572   2.449  -0.591  H20  B5L  38  
B5L  H21  H21  H  0  1  N  N  N  73.393  72.363  15.787  -1.206   2.449  -0.665  H21  B5L  39  
B5L  H22  H22  H  0  1  N  N  N  71.546  73.621  16.444  -1.295   3.698   1.475  H22  B5L  40  
B5L  H23  H23  H  0  1  N  N  N  70.567  72.169  16.845   0.483   3.698   1.549  H23  B5L  41  
B5L  H24  H24  H  0  1  N  N  N  69.877  73.182  14.803   0.503   4.897  -0.512  H24  B5L  42  
B5L  H25  H25  H  0  1  N  N  N  71.363  73.009  14.149  -1.143   4.897  -0.581  H25  B5L  43  
B5L  H26  H26  H  0  1  N  N  N  70.473  71.689  14.514  -0.369   5.721   0.618  H26  B5L  44  
B5L  H27  H27  H  0  1  N  N  N  71.367  69.581  16.725  -1.481   0.890  -1.490  H27  B5L  45  
B5L  H28  H28  H  0  1  N  N  N  71.444  69.057  18.441  -1.481  -0.890  -1.490  H28  B5L  46  
B5L  H29  H29  H  0  1  N  N  N  71.993  67.520  15.920  -2.819  -0.890   0.598  H29  B5L  47  
B5L  H30  H30  H  0  1  N  N  N  72.872  67.070  17.420  -2.819   0.890   0.598  H30  B5L  48  
B5L  H31  H31  H  0  1  N  N  N  69.857  67.144  16.954  -3.977   0.890  -1.595  H31  B5L  49  
B5L  H32  H32  H  0  1  N  N  N  70.887  65.718  17.317  -3.978  -0.890  -1.595  H32  B5L  50  
B5L  H33  H33  H  0  1  N  N  N  69.676  66.458  19.219  -5.262  -0.823   0.413  H33  B5L  51  
B5L  H34  H34  H  0  1  N  N  N  71.278  66.650  19.471  -5.262   0.824   0.413  H34  B5L  52  
B5L  H35  H35  H  0  1  N  N  N  70.341  67.947  19.141  -6.036   0.000  -0.785  H35  B5L  53  
B5L  H36  H36  H  0  1  N  N  N  79.146  71.553  17.134   5.855  -0.824  -1.102  H36  B5L  54  
B5L  H37  H37  H  0  1  N  N  N  77.655  71.291  17.745   5.855   0.823  -1.102  H37  B5L  55  
B5L  H38  H38  H  0  1  N  N  N  78.693  70.044  17.560   6.629  -0.000   0.097  H38  B5L  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B5L  N14  C13  SING  N  N   1  
B5L  C2   C3   SING  N  N   2  
B5L  C2   N1   SING  N  N   3  
B5L  C3   C4   SING  N  N   4  
B5L  C13  C12  SING  N  N   5  
B5L  C12  C11  SING  N  N   6  
B5L  C4   C5   SING  N  N   7  
B5L  C5   N6   SING  N  N   8  
B5L  C8   C7   SING  N  N   9  
B5L  C8   C9   SING  N  N  10  
B5L  C7   N6   SING  N  N  11  
B5L  C9   N10  SING  N  N  12  
B5L  C11  N6   SING  N  N  13  
B5L  N6   C15  SING  N  N  14  
B5L  C15  C16  SING  N  N  15  
B5L  C16  C17  SING  N  N  16  
B5L  C17  N18  SING  N  N  17  
B5L  C5   H1   SING  N  N  18  
B5L  C5   H2   SING  N  N  19  
B5L  C4   H3   SING  N  N  20  
B5L  C4   H4   SING  N  N  21  
B5L  C3   H5   SING  N  N  22  
B5L  C3   H6   SING  N  N  23  
B5L  C2   H7   SING  N  N  24  
B5L  C2   H8   SING  N  N  25  
B5L  N18  H9   SING  N  N  26  
B5L  N18  H10  SING  N  N  27  
B5L  N18  H11  SING  N  N  28  
B5L  C17  H12  SING  N  N  29  
B5L  C17  H13  SING  N  N  30  
B5L  C16  H14  SING  N  N  31  
B5L  C16  H15  SING  N  N  32  
B5L  C15  H16  SING  N  N  33  
B5L  C15  H17  SING  N  N  34  
B5L  C11  H18  SING  N  N  35  
B5L  C11  H19  SING  N  N  36  
B5L  C12  H20  SING  N  N  37  
B5L  C12  H21  SING  N  N  38  
B5L  C13  H22  SING  N  N  39  
B5L  C13  H23  SING  N  N  40  
B5L  N14  H24  SING  N  N  41  
B5L  N14  H25  SING  N  N  42  
B5L  N14  H26  SING  N  N  43  
B5L  C7   H27  SING  N  N  44  
B5L  C7   H28  SING  N  N  45  
B5L  C8   H29  SING  N  N  46  
B5L  C8   H30  SING  N  N  47  
B5L  C9   H31  SING  N  N  48  
B5L  C9   H32  SING  N  N  49  
B5L  N10  H33  SING  N  N  50  
B5L  N10  H34  SING  N  N  51  
B5L  N10  H35  SING  N  N  52  
B5L  N1   H36  SING  N  N  53  
B5L  N1   H37  SING  N  N  54  
B5L  N1   H38  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B5L  SMILES            ACDLabs               12.01  "C([N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+])CCC[NH3+]"  
B5L  InChI             InChI                 1.03   "InChI=1S/C13H34N5/c14-6-1-2-10-18(11-3-7-15,12-4-8-16)13-5-9-17/h1-17H2/q+1/p+4"  
B5L  InChIKey          InChI                 1.03   FMTAVYOBEGHWPT-UHFFFAOYSA-R  
B5L  SMILES_CANONICAL  CACTVS                3.385  "[NH3+]CCCC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+]"  
B5L  SMILES            CACTVS                3.385  "[NH3+]CCCC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+]"  
B5L  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C(CC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+])C[NH3+]"  
B5L  SMILES            "OpenEye OEToolkits"  2.0.6  "C(CC[N+](CCC[NH3+])(CCC[NH3+])CCC[NH3+])C[NH3+]"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
B5L  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~1~,N~1~,N~1~-tris(3-azaniumylpropyl)butane-1,4-diaminium"  
B5L  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "4-azaniumylbutyl-tris(3-azaniumylpropyl)azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B5L  "Create component"  2019-01-16  PDBJ  
B5L  "Initial release"   2019-06-26  RCSB  
B5L  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     B5L
_pdbx_chem_comp_synonyms.name        "N4-bis(aminopropyl)spermidine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
