data_AYL
# 
_chem_comp.id                                    AYL 
_chem_comp.name                                  "5'-O-{(S)-hydroxy[3-(4-hydroxyphenyl)propoxy]phosphoryl}adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H24 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-28 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.396 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AYL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3NI2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AYL P      P    P 0 1 N N N -9.349  14.518 -22.408 1.606  2.095  0.961  P    AYL 1  
AYL N1     N1   N 0 1 Y N N -5.001  11.912 -31.180 -7.584 -2.977 -0.433 N1   AYL 2  
AYL C2     C2   C 0 1 Y N N -6.296  11.688 -31.315 -7.374 -2.064 -1.363 C2   AYL 3  
AYL N3     N3   N 0 1 Y N N -7.124  11.818 -30.295 -6.339 -1.252 -1.334 N3   AYL 4  
AYL C4     C4   C 0 1 Y N N -6.675  12.182 -29.083 -5.449 -1.322 -0.349 C4   AYL 5  
AYL C5     C5   C 0 1 Y N N -5.319  12.425 -28.899 -5.628 -2.278 0.665  C5   AYL 6  
AYL C6     C6   C 0 1 Y N N -4.483  12.278 -29.999 -6.749 -3.122 0.591  C6   AYL 7  
AYL N6     N6   N 0 1 N N N -3.175  12.491 -29.885 -6.978 -4.082 1.561  N6   AYL 8  
AYL N7     N7   N 0 1 Y N N -5.097  12.866 -27.662 -4.596 -2.139 1.532  N7   AYL 9  
AYL C8     C8   C 0 1 Y N N -6.351  12.772 -26.902 -3.814 -1.182 1.123  C8   AYL 10 
AYL N9     N9   N 0 1 Y N N -7.320  12.418 -27.946 -4.298 -0.647 -0.033 N9   AYL 11 
AYL "C1'"  C1*  C 0 1 N N R -8.778  12.343 -27.703 -3.697 0.448  -0.799 C1*  AYL 12 
AYL O1P    O1P  O 0 1 N N N -9.807  13.590 -21.175 1.281  1.770  2.504  O1P  AYL 13 
AYL "C2'"  C2*  C 0 1 N N R -9.152  10.885 -27.424 -4.337 1.804  -0.406 C2*  AYL 14 
AYL "O2'"  O2*  O 0 1 N N N -10.533 10.670 -27.727 -5.520 2.050  -1.169 O2*  AYL 15 
AYL O2P    O2P  O 0 1 N N N -7.746  14.684 -22.379 2.834  1.179  0.468  O2P  AYL 16 
AYL "C3'"  C3*  C 0 1 N N S -8.914  10.812 -25.917 -3.220 2.810  -0.777 C3*  AYL 17 
AYL "O3'"  O3*  O 0 1 N N N -9.651  9.723  -25.353 -3.473 3.386  -2.061 O3*  AYL 18 
AYL O3P    O3P  O 0 1 N N N -10.035 15.968 -22.297 1.968  3.523  0.823  O3P  AYL 19 
AYL "C4'"  C4*  C 0 1 N N R -9.588  12.130 -25.543 -1.939 1.955  -0.813 C4*  AYL 20 
AYL "O4'"  O4*  O 0 1 N N N -9.060  13.070 -26.493 -2.308 0.616  -0.444 O4*  AYL 21 
AYL "C5'"  C5*  C 0 1 N N N -9.252  12.529 -24.106 -0.918 2.506  0.184  C5*  AYL 22 
AYL "O5'"  O5*  O 0 1 N N N -9.772  13.824 -23.797 0.308  1.781  0.062  O5*  AYL 23 
AYL CAC    CAC  C 0 1 Y N N -0.622  14.936 -23.247 9.054  -2.420 -1.035 CAC  AYL 24 
AYL CAD    CAD  C 0 1 Y N N -1.401  15.065 -22.104 8.370  -2.772 0.120  CAD  AYL 25 
AYL CAH    CAH  C 0 1 Y N N -2.617  14.628 -24.563 8.073  -0.235 -0.947 CAH  AYL 26 
AYL CAJ    CAJ  C 0 1 Y N N -2.787  14.976 -22.190 7.542  -1.855 0.738  CAJ  AYL 27 
AYL CAK    CAK  C 0 1 Y N N -3.397  14.756 -23.419 7.393  -0.587 0.205  CAK  AYL 28 
AYL CAP    CAP  C 0 1 N N N -4.920  14.622 -23.513 6.489  0.411  0.881  CAP  AYL 29 
AYL CAQ    CAQ  C 0 1 N N N -5.631  15.811 -22.863 5.074  0.284  0.312  CAQ  AYL 30 
AYL CAR    CAR  C 0 1 N N N -7.144  15.771 -23.089 4.156  1.298  0.998  CAR  AYL 31 
AYL CAS    CAS  C 0 1 Y N N -1.232  14.717 -24.479 8.902  -1.148 -1.568 CAS  AYL 32 
AYL OBF    OBF  O 0 1 N N N 0.733   15.020 -23.161 9.873  -3.319 -1.641 OBF  AYL 33 
AYL H2     H2   H 0 1 N N N -6.685  11.393 -32.278 -8.078 -1.981 -2.178 H2   AYL 34 
AYL HN6    HN6  H 0 1 N N N -2.733  12.334 -30.768 -7.755 -4.659 1.499  HN6  AYL 35 
AYL HN6A   HN6A H 0 0 N N N -3.015  13.435 -29.595 -6.361 -4.178 2.304  HN6A AYL 36 
AYL H8     H8   H 0 1 N N N -6.517  12.924 -25.846 -2.915 -0.859 1.627  H8   AYL 37 
AYL "H1'"  H1*  H 0 1 N N N -9.327  12.743 -28.568 -3.803 0.270  -1.869 H1*  AYL 38 
AYL HO1P   HO1P H 0 0 N N N -10.398 14.078 -20.614 1.035  0.850  2.670  HO1P AYL 39 
AYL "H2'"  H2*  H 0 1 N N N -8.593  10.140 -28.009 -4.551 1.838  0.662  H2*  AYL 40 
AYL "HO2'" HO2* H 0 0 N N N -10.759 9.764  -27.552 -5.956 2.887  -0.959 HO2* AYL 41 
AYL "H3'"  H3*  H 0 1 N N N -7.873  10.672 -25.592 -3.141 3.589  -0.020 H3*  AYL 42 
AYL "HO3'" HO3* H 0 0 N N N -9.496  9.687  -24.416 -4.298 3.887  -2.111 HO3* AYL 43 
AYL "H4'"  H4*  H 0 1 N N N -10.686 12.075 -25.579 -1.518 1.959  -1.818 H4*  AYL 44 
AYL "H5'"  H5*  H 0 1 N N N -9.695  11.793 -23.418 -0.738 3.561  -0.025 H5*  AYL 45 
AYL "H5'A" H5*A H 0 0 N N N -8.159  12.545 -23.986 -1.304 2.398  1.198  H5*A AYL 46 
AYL HAD    HAD  H 0 1 N N N -0.930  15.235 -21.147 8.486  -3.761 0.536  HAD  AYL 47 
AYL HAH    HAH  H 0 1 N N N -3.088  14.459 -25.520 7.954  0.756  -1.361 HAH  AYL 48 
AYL HAJ    HAJ  H 0 1 N N N -3.390  15.078 -21.300 7.010  -2.128 1.637  HAJ  AYL 49 
AYL HAP    HAP  H 0 1 N N N -5.206  14.575 -24.574 6.469  0.216  1.953  HAP  AYL 50 
AYL HAPA   HAPA H 0 0 N N N -5.227  13.701 -22.996 6.863  1.419  0.702  HAPA AYL 51 
AYL HAQ    HAQ  H 0 1 N N N -5.437  15.787 -21.780 5.094  0.479  -0.760 HAQ  AYL 52 
AYL HAQA   HAQA H 0 0 N N N -5.235  16.739 -23.301 4.700  -0.724 0.491  HAQA AYL 53 
AYL HAR    HAR  H 0 1 N N N -7.340  15.646 -24.164 4.530  2.306  0.820  HAR  AYL 54 
AYL HARA   HARA H 0 0 N N N -7.582  16.715 -22.733 4.136  1.102  2.070  HARA AYL 55 
AYL HAS    HAS  H 0 1 N N N -0.629  14.616 -25.370 9.433  -0.872 -2.467 HAS  AYL 56 
AYL HOBF   HOBF H 0 0 N N N 1.113   14.912 -24.025 9.433  -3.867 -2.305 HOBF AYL 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AYL P     O1P    SING N N 1  
AYL P     O2P    SING N N 2  
AYL P     O3P    DOUB N N 3  
AYL P     "O5'"  SING N N 4  
AYL N1    C2     DOUB Y N 5  
AYL N1    C6     SING Y N 6  
AYL C2    N3     SING Y N 7  
AYL N3    C4     DOUB Y N 8  
AYL C4    C5     SING Y N 9  
AYL C4    N9     SING Y N 10 
AYL C5    C6     DOUB Y N 11 
AYL C5    N7     SING Y N 12 
AYL C6    N6     SING N N 13 
AYL N7    C8     DOUB Y N 14 
AYL C8    N9     SING Y N 15 
AYL N9    "C1'"  SING N N 16 
AYL "C1'" "C2'"  SING N N 17 
AYL "C1'" "O4'"  SING N N 18 
AYL "C2'" "O2'"  SING N N 19 
AYL "C2'" "C3'"  SING N N 20 
AYL O2P   CAR    SING N N 21 
AYL "C3'" "O3'"  SING N N 22 
AYL "C3'" "C4'"  SING N N 23 
AYL "C4'" "O4'"  SING N N 24 
AYL "C4'" "C5'"  SING N N 25 
AYL "C5'" "O5'"  SING N N 26 
AYL CAC   CAD    DOUB Y N 27 
AYL CAC   CAS    SING Y N 28 
AYL CAC   OBF    SING N N 29 
AYL CAD   CAJ    SING Y N 30 
AYL CAH   CAK    SING Y N 31 
AYL CAH   CAS    DOUB Y N 32 
AYL CAJ   CAK    DOUB Y N 33 
AYL CAK   CAP    SING N N 34 
AYL CAP   CAQ    SING N N 35 
AYL CAQ   CAR    SING N N 36 
AYL C2    H2     SING N N 37 
AYL N6    HN6    SING N N 38 
AYL N6    HN6A   SING N N 39 
AYL C8    H8     SING N N 40 
AYL "C1'" "H1'"  SING N N 41 
AYL O1P   HO1P   SING N N 42 
AYL "C2'" "H2'"  SING N N 43 
AYL "O2'" "HO2'" SING N N 44 
AYL "C3'" "H3'"  SING N N 45 
AYL "O3'" "HO3'" SING N N 46 
AYL "C4'" "H4'"  SING N N 47 
AYL "C5'" "H5'"  SING N N 48 
AYL "C5'" "H5'A" SING N N 49 
AYL CAD   HAD    SING N N 50 
AYL CAH   HAH    SING N N 51 
AYL CAJ   HAJ    SING N N 52 
AYL CAP   HAP    SING N N 53 
AYL CAP   HAPA   SING N N 54 
AYL CAQ   HAQ    SING N N 55 
AYL CAQ   HAQA   SING N N 56 
AYL CAR   HAR    SING N N 57 
AYL CAR   HARA   SING N N 58 
AYL CAS   HAS    SING N N 59 
AYL OBF   HOBF   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AYL SMILES           ACDLabs              12.01 "O=P(OCCCc1ccc(O)cc1)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O" 
AYL SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OCCCc4ccc(O)cc4)[C@@H](O)[C@H]3O" 
AYL SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OCCCc4ccc(O)cc4)[CH](O)[CH]3O" 
AYL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1CCCO[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O" 
AYL SMILES           "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1CCCOP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O" 
AYL InChI            InChI                1.03  
"InChI=1S/C19H24N5O8P/c20-17-14-18(22-9-21-17)24(10-23-14)19-16(27)15(26)13(32-19)8-31-33(28,29)30-7-1-2-11-3-5-12(25)6-4-11/h3-6,9-10,13,15-16,19,25-27H,1-2,7-8H2,(H,28,29)(H2,20,21,22)/t13-,15-,16-,19-/m1/s1" 
AYL InChIKey         InChI                1.03  AWKHKUUJFJBBRQ-NVQRDWNXSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AYL "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-{(S)-hydroxy[3-(4-hydroxyphenyl)propoxy]phosphoryl}adenosine"                                                  
AYL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl 3-(4-hydroxyphenyl)propyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AYL "Create component"     2010-06-28 PDBJ 
AYL "Modify aromatic_flag" 2011-06-04 RCSB 
AYL "Modify descriptor"    2011-06-04 RCSB 
# 
