data_A2L
# 
_chem_comp.id                                    A2L 
_chem_comp.name                                  
;3'-O-METHYOXYETHYL-ADENOSINE 5'-MONOPHOSPHATE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C13 H20 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-10-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.300 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     A2L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A2L "O2'"  O2*  O 0 1 N N N -3.501 -4.516  6.200  -0.210 1.445  1.415  "O2'"  A2L 1  
A2L "C2'"  C2*  C 0 1 N N R -2.624 -4.014  5.211  0.518  0.913  0.310  "C2'"  A2L 2  
A2L "C1'"  C1*  C 0 1 N N R -1.178 -3.948  5.691  0.622  1.976  -0.784 "C1'"  A2L 3  
A2L "O4'"  O4*  O 0 1 N N N -0.420 -4.653  4.710  1.933  2.574  -0.689 "O4'"  A2L 4  
A2L "C4'"  C4*  C 0 1 N N R -1.131 -4.706  3.481  2.595  2.031  0.465  "C4'"  A2L 5  
A2L "C5'"  C5*  C 0 1 N N N -1.003 -3.480  2.545  4.092  1.980  0.223  "C5'"  A2L 6  
A2L "O5'"  O5*  O 0 1 N N N -2.243 -2.834  2.307  4.566  3.301  0.029  "O5'"  A2L 7  
A2L P      P    P 0 1 N N N -2.375 -1.513  1.389  6.145  3.523  -0.251 P      A2L 8  
A2L OP1    O1P  O 0 1 N N N -1.674 -1.765  0.111  6.560  4.952  -0.444 OP1    A2L 9  
A2L OP3    O3P  O 0 1 N Y N ?      ?       ?      6.456  2.538  -1.495 OP3    A2L 10 
A2L OP2    O2P  O 0 1 N N N -3.802 -1.126  1.369  6.843  2.773  1.000  OP2    A2L 11 
A2L "C3'"  C3*  C 0 1 N N S -2.529 -4.993  4.037  1.969  0.663  0.677  "C3'"  A2L 12 
A2L "O3'"  O3*  O 0 1 N N N -2.580 -6.365  4.424  2.143  0.197  1.998  "O3'"  A2L 13 
A2L "CA'"  CA*  C 0 1 N N N -2.933 -7.230  3.353  1.460  -1.029 2.206  "CA'"  A2L 14 
A2L "CB'"  CB*  C 0 1 N N N -2.776 -8.688  3.789  1.700  -1.494 3.629  "CB'"  A2L 15 
A2L "OC'"  OC*  O 0 1 N N N -3.726 -9.023  4.787  3.094  -1.697 3.822  "OC'"  A2L 16 
A2L "CD'"  CD*  C 0 1 N N N -3.591 -10.368 5.208  3.381  -2.113 5.150  "CD'"  A2L 17 
A2L N9     N9   N 0 1 Y N N -0.419 -2.683  5.655  0.424  1.450  -2.136 N9     A2L 18 
A2L C8     C8   C 0 1 Y N N -0.712 -1.485  5.060  1.390  0.903  -2.940 C8     A2L 19 
A2L N7     N7   N 0 1 Y N N 0.200  -0.569  5.225  0.910  0.517  -4.103 N7     A2L 20 
A2L C5     C5   C 0 1 Y N N 1.171  -1.208  5.987  -0.426 0.827  -4.052 C5     A2L 21 
A2L C4     C4   C 0 1 Y N N 0.798  -2.500  6.263  -0.749 1.408  -2.837 C4     A2L 22 
A2L N3     N3   N 0 1 Y N N 1.496  -3.419  6.986  -1.956 1.836  -2.437 N3     A2L 23 
A2L C2     C2   C 0 1 Y N N 2.692  -2.953  7.328  -2.875 1.627  -3.404 C2     A2L 24 
A2L N1     N1   N 0 1 Y N N 3.207  -1.746  7.094  -2.709 1.075  -4.630 N1     A2L 25 
A2L C6     C6   C 0 1 Y N N 2.460  -0.841  6.434  -1.462 0.665  -4.967 C6     A2L 26 
A2L N6     N6   N 0 1 N N N 2.987  0.368   6.243  -1.225 0.085  -6.225 N6     A2L 27 
A2L "HO2'" 2HO* H 0 0 N N N -4.402 -4.557  5.901  -1.062 1.768  1.071  "HO2'" A2L 28 
A2L "H2'"  H2*  H 0 1 N N N -2.968 -3.047  4.849  -0.000 0.001  -0.003 "H2'"  A2L 29 
A2L "H1'"  H1*  H 0 1 N N N -1.111 -4.473  6.628  -0.125 2.769  -0.673 "H1'"  A2L 30 
A2L "H4'"  H4*  H 0 1 N N N -0.751 -5.536  2.898  2.399  2.693  1.317  "H4'"  A2L 31 
A2L "H5'"  1H5* H 0 1 N N N -0.588 -3.813  1.594  4.308  1.388  -0.668 "H5'"  A2L 32 
A2L "H5''" 2H5* H 0 0 N N N -0.299 -2.768  2.965  4.597  1.541  1.085  "H5''" A2L 33 
A2L HOP3   3HOP H 0 0 N N N -0.078 0.778   -0.540 7.351  2.548  -1.896 HOP3   A2L 34 
A2L HOP2   2HOP H 0 0 N N N -3.880 -0.348  0.829  7.814  2.842  1.113  HOP2   A2L 35 
A2L "H3'"  H3*  H 0 1 N N N -3.314 -4.759  3.345  2.403  -0.065 -0.019 "H3'"  A2L 36 
A2L "HA'1" 1HA* H 0 0 N N N -2.284 -7.054  2.496  0.394  -0.862 2.020  "HA'1" A2L 37 
A2L "HA'2" 2HA* H 0 0 N N N -3.966 -7.047  3.054  1.848  -1.762 1.493  "HA'2" A2L 38 
A2L "HB'1" 1HB* H 0 0 N N N -1.764 -8.836  4.166  1.187  -2.440 3.827  "HB'1" A2L 39 
A2L "HB'2" 2HB* H 0 0 N N N -2.928 -9.329  2.920  1.362  -0.735 4.342  "HB'2" A2L 40 
A2L "HD'1" 1HD* H 0 0 N N N -3.774 -11.042 4.370  3.405  -1.242 5.809  "HD'1" A2L 41 
A2L "HD'2" 2HD* H 0 0 N N N -4.319 -10.572 5.994  4.345  -2.626 5.172  "HD'2" A2L 42 
A2L "HD'3" 3HD* H 0 0 N N N -2.588 -10.538 5.601  2.598  -2.798 5.484  "HD'3" A2L 43 
A2L H8     H8   H 0 1 N N N -1.622 -1.329  4.503  2.421  0.814  -2.623 H8     A2L 44 
A2L H2     H2   H 0 1 N N N 3.319  -3.647  7.863  -3.885 1.945  -3.168 H2     A2L 45 
A2L H61    1H6  H 0 1 N N N 3.913  0.562   6.597  -0.293 -0.186 -6.475 H61    A2L 46 
A2L H62    2H6  H 0 1 N N N 2.459  1.073   5.751  -1.971 0.035  -6.893 H62    A2L 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A2L "O2'" "C2'"  SING N N 1  
A2L "O2'" "HO2'" SING N N 2  
A2L "C2'" "C1'"  SING N N 3  
A2L "C2'" "C3'"  SING N N 4  
A2L "C2'" "H2'"  SING N N 5  
A2L "C1'" "O4'"  SING N N 6  
A2L "C1'" N9     SING N N 7  
A2L "C1'" "H1'"  SING N N 8  
A2L "O4'" "C4'"  SING N N 9  
A2L "C4'" "C5'"  SING N N 10 
A2L "C4'" "C3'"  SING N N 11 
A2L "C4'" "H4'"  SING N N 12 
A2L "C5'" "O5'"  SING N N 13 
A2L "C5'" "H5'"  SING N N 14 
A2L "C5'" "H5''" SING N N 15 
A2L "O5'" P      SING N N 16 
A2L P     OP1    DOUB N N 17 
A2L P     OP3    SING N N 18 
A2L P     OP2    SING N N 19 
A2L OP3   HOP3   SING N N 20 
A2L OP2   HOP2   SING N N 21 
A2L "C3'" "O3'"  SING N N 22 
A2L "C3'" "H3'"  SING N N 23 
A2L "O3'" "CA'"  SING N N 24 
A2L "CA'" "CB'"  SING N N 25 
A2L "CA'" "HA'1" SING N N 26 
A2L "CA'" "HA'2" SING N N 27 
A2L "CB'" "OC'"  SING N N 28 
A2L "CB'" "HB'1" SING N N 29 
A2L "CB'" "HB'2" SING N N 30 
A2L "OC'" "CD'"  SING N N 31 
A2L "CD'" "HD'1" SING N N 32 
A2L "CD'" "HD'2" SING N N 33 
A2L "CD'" "HD'3" SING N N 34 
A2L N9    C8     SING Y N 35 
A2L N9    C4     SING Y N 36 
A2L C8    N7     DOUB Y N 37 
A2L C8    H8     SING N N 38 
A2L N7    C5     SING Y N 39 
A2L C5    C4     DOUB Y N 40 
A2L C5    C6     SING Y N 41 
A2L C4    N3     SING Y N 42 
A2L N3    C2     DOUB Y N 43 
A2L C2    N1     SING Y N 44 
A2L C2    H2     SING N N 45 
A2L N1    C6     DOUB Y N 46 
A2L C6    N6     SING N N 47 
A2L N6    H61    SING N N 48 
A2L N6    H62    SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A2L SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OCCOC"                                                                                                                                     
A2L SMILES_CANONICAL CACTVS               3.341 "COCCO[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23"                                                                                                                
A2L SMILES           CACTVS               3.341 "COCCO[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23"                                                                                                                       
A2L SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COCCO[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)COP(=O)(O)O"                                                                                                                     
A2L SMILES           "OpenEye OEToolkits" 1.5.0 "COCCOC1C(OC(C1O)n2cnc3c2ncnc3N)COP(=O)(O)O"                                                                                                                                       
A2L InChI            InChI                1.03  "InChI=1S/C13H20N5O8P/c1-23-2-3-24-10-7(4-25-27(20,21)22)26-13(9(10)19)18-6-17-8-11(14)15-5-16-12(8)18/h5-7,9-10,13,19H,2-4H2,1H3,(H2,14,15,16)(H2,20,21,22)/t7-,9-,10-,13-/m1/s1" 
A2L InChIKey         InChI                1.03  LISGIEGLNMXMPT-QYVSTXNMSA-N                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A2L "SYSTEMATIC NAME" ACDLabs              10.04 
;3'-O-(2-methoxyethyl)adenosine 5'-(dihydrogen phosphate)
;
A2L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(2-methoxyethoxy)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A2L "Create component"  2004-10-29 RCSB 
A2L "Modify descriptor" 2011-06-04 RCSB 
# 
