data_6RL
#

_chem_comp.id                                   6RL
_chem_comp.name                                 
;2-[[6-[(3~{R})-3-azanylpiperidin-1-yl]-3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]methyl]-4-fluoranyl-benzenecarboni
trile
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H20 F N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SYR-472
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-06
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       357.382
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6RL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KBY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6RL  C5   C1   C  0  1  N  N  N  43.977  32.368  14.465  -0.006   2.375   0.950  C5   6RL   1  
6RL  C6   C2   C  0  1  N  N  N  43.443  33.626  14.628   0.264   1.284   0.172  C6   6RL   2  
6RL  C8   C3   C  0  1  N  N  N  44.884  35.395  15.239   2.221   0.326   1.333  C8   6RL   3  
6RL  C10  C4   C  0  1  N  N  N  45.341  35.884  17.638   4.365   0.787   0.136  C10  6RL   4  
6RL  C17  C5   C  0  1  Y  N  N  40.405  35.446  13.967  -0.525  -1.714  -0.560  C17  6RL   5  
6RL  C21  C6   C  0  1  Y  N  N  37.604  35.599  14.022  -0.635  -4.018   0.987  C21  6RL   6  
6RL  C22  C7   C  0  1  Y  N  N  38.242  34.703  14.850  -1.802  -3.474   0.494  C22  6RL   7  
6RL  C24  C8   C  0  1  N  N  N  40.243  33.663  15.730  -2.966  -1.737  -0.786  C24  6RL   8  
6RL  C26  C9   C  0  1  N  N  N  42.134  33.333  12.671  -1.998   1.200  -0.492  C26  6RL   9  
6RL  C1   C10  C  0  1  N  N  N  42.250  31.259  11.342  -3.654   2.785   0.319  C1   6RL  10  
6RL  N2   N1   N  0  1  N  N  N  42.651  32.091  12.491  -2.284   2.267   0.277  N2   6RL  11  
6RL  C3   C11  C  0  1  N  N  N  43.557  31.594  13.372  -1.319   2.871   0.997  C3   6RL  12  
6RL  O4   O1   O  0  1  N  N  N  44.016  30.479  13.204  -1.583   3.843   1.684  O4   6RL  13  
6RL  N7   N2   N  0  1  N  N  N  43.846  34.435  15.658   1.536   0.775   0.113  N7   6RL  14  
6RL  C9   C12  C  0  1  N  N  N  44.939  36.524  16.289   3.577   1.033   1.425  C9   6RL  15  
6RL  C11  C13  C  0  1  N  N  R  44.291  34.835  18.033   3.597   1.370  -1.052  C11  6RL  16  
6RL  N13  N3   N  0  1  N  N  N  42.983  35.494  18.211   4.368   1.161  -2.285  N13  6RL  17  
6RL  C14  C14  C  0  1  N  N  N  44.206  33.763  16.925   2.240   0.668  -1.172  C14  6RL  18  
6RL  N15  N4   N  0  1  N  N  N  42.500  34.091  13.727  -0.749   0.702  -0.549  N15  6RL  19  
6RL  C16  C15  C  0  1  N  N  N  41.919  35.437  13.898  -0.467  -0.461  -1.394  C16  6RL  20  
6RL  C18  C16  C  0  1  Y  N  N  39.743  36.349  13.157   0.637  -2.269  -0.066  C18  6RL  21  
6RL  C19  C17  C  0  1  Y  N  N  38.357  36.419  13.189   0.584  -3.419   0.706  C19  6RL  22  
6RL  F20  F1   F  0  1  N  N  N  37.722  37.300  12.392   1.726  -3.959   1.187  F20  6RL  23  
6RL  C23  C18  C  0  1  Y  N  N  39.651  34.618  14.835  -1.755  -2.313  -0.280  C23  6RL  24  
6RL  N25  N5   N  0  1  N  N  N  40.767  32.922  16.416  -3.926  -1.281  -1.186  N25  6RL  25  
6RL  O27  O2   O  0  1  N  N  N  41.311  33.779  11.880  -2.882   0.678  -1.144  O27  6RL  26  
6RL  H1   H1   H  0  1  N  N  N  44.705  31.984  15.164   0.778   2.846   1.525  H1   6RL  27  
6RL  H2   H2   H  0  1  N  N  N  45.859  34.890  15.183   1.617   0.579   2.205  H2   6RL  28  
6RL  H3   H3   H  0  1  N  N  N  44.630  35.813  14.254   2.373  -0.752   1.291  H3   6RL  29  
6RL  H4   H4   H  0  1  N  N  N  46.324  35.401  17.537   5.340   1.267   0.209  H4   6RL  30  
6RL  H5   H5   H  0  1  N  N  N  45.393  36.662  18.413   4.498  -0.285  -0.009  H5   6RL  31  
6RL  H6   H6   H  0  1  N  N  N  36.526  35.664  14.020  -0.669  -4.916   1.586  H6   6RL  32  
6RL  H7   H7   H  0  1  N  N  N  37.667  34.068  15.508  -2.750  -3.946   0.707  H7   6RL  33  
6RL  H8   H8   H  0  1  N  N  N  42.781  30.297  11.382  -4.205   2.289   1.118  H8   6RL  34  
6RL  H9   H9   H  0  1  N  N  N  41.165  31.081  11.379  -3.630   3.859   0.507  H9   6RL  35  
6RL  H10  H10  H  0  1  N  N  N  42.504  31.779  10.407  -4.144   2.593  -0.635  H10  6RL  36  
6RL  H11  H11  H  0  1  N  N  N  45.685  37.276  15.993   3.422   2.103   1.558  H11  6RL  37  
6RL  H12  H12  H  0  1  N  N  N  43.952  37.002  16.379   4.136   0.638   2.274  H12  6RL  38  
6RL  H13  H13  H  0  1  N  N  N  44.599  34.354  18.973   3.441   2.438  -0.896  H13  6RL  39  
6RL  H14  H14  H  0  1  N  N  N  43.053  36.185  18.931   5.268   1.613  -2.229  H14  6RL  40  
6RL  H15  H15  H  0  1  N  N  N  42.711  35.932  17.354   4.469   0.178  -2.486  H15  6RL  41  
6RL  H17  H17  H  0  1  N  N  N  43.437  33.020  17.184   2.394  -0.383  -1.418  H17  6RL  42  
6RL  H18  H18  H  0  1  N  N  N  45.179  33.261  16.817   1.650   1.146  -1.954  H18  6RL  43  
6RL  H19  H19  H  0  1  N  N  N  42.311  35.868  14.831   0.527  -0.360  -1.831  H19  6RL  44  
6RL  H20  H20  H  0  1  N  N  N  42.231  36.060  13.047  -1.209  -0.520  -2.191  H20  6RL  45  
6RL  H21  H21  H  0  1  N  N  N  40.303  36.999  12.501   1.589  -1.808  -0.282  H21  6RL  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6RL  C1   N2   SING  N  N   1  
6RL  O27  C26  DOUB  N  N   2  
6RL  F20  C19  SING  N  N   3  
6RL  N2   C26  SING  N  N   4  
6RL  N2   C3   SING  N  N   5  
6RL  C26  N15  SING  N  N   6  
6RL  C18  C19  DOUB  Y  N   7  
6RL  C18  C17  SING  Y  N   8  
6RL  C19  C21  SING  Y  N   9  
6RL  O4   C3   DOUB  N  N  10  
6RL  C3   C5   SING  N  N  11  
6RL  N15  C16  SING  N  N  12  
6RL  N15  C6   SING  N  N  13  
6RL  C16  C17  SING  N  N  14  
6RL  C17  C23  DOUB  Y  N  15  
6RL  C21  C22  DOUB  Y  N  16  
6RL  C5   C6   DOUB  N  N  17  
6RL  C6   N7   SING  N  N  18  
6RL  C23  C22  SING  Y  N  19  
6RL  C23  C24  SING  N  N  20  
6RL  C8   N7   SING  N  N  21  
6RL  C8   C9   SING  N  N  22  
6RL  N7   C14  SING  N  N  23  
6RL  C24  N25  TRIP  N  N  24  
6RL  C9   C10  SING  N  N  25  
6RL  C14  C11  SING  N  N  26  
6RL  C10  C11  SING  N  N  27  
6RL  C11  N13  SING  N  N  28  
6RL  C5   H1   SING  N  N  29  
6RL  C8   H2   SING  N  N  30  
6RL  C8   H3   SING  N  N  31  
6RL  C10  H4   SING  N  N  32  
6RL  C10  H5   SING  N  N  33  
6RL  C21  H6   SING  N  N  34  
6RL  C22  H7   SING  N  N  35  
6RL  C1   H8   SING  N  N  36  
6RL  C1   H9   SING  N  N  37  
6RL  C1   H10  SING  N  N  38  
6RL  C9   H11  SING  N  N  39  
6RL  C9   H12  SING  N  N  40  
6RL  C11  H13  SING  N  N  41  
6RL  N13  H14  SING  N  N  42  
6RL  N13  H15  SING  N  N  43  
6RL  C14  H17  SING  N  N  44  
6RL  C14  H18  SING  N  N  45  
6RL  C16  H19  SING  N  N  46  
6RL  C16  H20  SING  N  N  47  
6RL  C18  H21  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6RL  InChI             InChI                 1.03   "InChI=1S/C18H20FN5O2/c1-22-17(25)8-16(23-6-2-3-15(21)11-23)24(18(22)26)10-13-7-14(19)5-4-12(13)9-20/h4-5,7-8,15H,2-3,6,10-11,21H2,1H3/t15-/m1/s1"  
6RL  InChIKey          InChI                 1.03   IWYJYHUNXVAVAA-OAHLLOKOSA-N  
6RL  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=O)C=C(N2CCC[C@@H](N)C2)N(Cc3cc(F)ccc3C#N)C1=O"  
6RL  SMILES            CACTVS                3.385  "CN1C(=O)C=C(N2CCC[CH](N)C2)N(Cc3cc(F)ccc3C#N)C1=O"  
6RL  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "CN1C(=O)C=C(N(C1=O)Cc2cc(ccc2C#N)F)N3CCC[C@H](C3)N"  
6RL  SMILES            "OpenEye OEToolkits"  2.0.5  "CN1C(=O)C=C(N(C1=O)Cc2cc(ccc2C#N)F)N3CCCC(C3)N"  
#
_pdbx_chem_comp_identifier.comp_id          6RL
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "2-[[6-[(3~{R})-3-azanylpiperidin-1-yl]-3-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]methyl]-4-fluoranyl-benzenecarbonitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6RL  "Create component"  2016-06-06  RCSB  
6RL  "Initial release"   2016-07-13  RCSB  
6RL  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6RL
_pdbx_chem_comp_synonyms.name        SYR-472
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
