data_53L
# 
_chem_comp.id                                    53L 
_chem_comp.name                                  "(2R,4S,4aS,5S)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4,4a-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-07-22 
_chem_comp.pdbx_modified_date                    2015-12-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        374.348 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     53L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5CDO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
53L C2   C1  C 0  1 N N S 60.822 -46.512 55.323 -1.050 0.688  -0.585 C2   53L 1  
53L C3   C2  C 0  1 N N S 60.076 -45.208 55.460 -2.432 1.260  -0.260 C3   53L 2  
53L C5   C3  C 0  1 N N N 60.312 -44.249 54.327 -3.466 0.684  -1.229 C5   53L 3  
53L O6   O1  O 0  1 N N N 60.503 -44.482 56.604 -2.390 2.684  -0.396 O6   53L 4  
53L C7   C4  C 0  1 N N R 59.978 -45.093 57.759 -1.422 3.319  0.444  C7   53L 5  
53L C9   C5  C 0  1 N N N 60.464 -44.326 58.965 -1.434 4.827  0.187  C9   53L 6  
53L C10  C6  C 0  1 N N N 60.585 -46.471 57.829 -0.030 2.759  0.131  C10  53L 7  
53L N11  N1  N 0  1 N N N 60.493 -47.200 56.562 -0.052 1.300  0.295  N11  53L 8  
53L C12  C7  C 0  1 Y N N 60.341 -48.612 56.562 1.215  0.741  0.156  C12  53L 9  
53L C13  C8  C 0  1 Y N N 60.085 -49.306 57.727 2.310  1.496  0.577  C13  53L 10 
53L C14  C9  C 0  1 Y N N 59.903 -50.663 57.722 3.589  0.991  0.470  C14  53L 11 
53L C15  C10 C 0  1 Y N N 59.965 -51.324 56.526 3.789  -0.272 -0.056 C15  53L 12 
53L C16  C11 C 0  1 Y N N 60.206 -50.683 55.340 2.709  -1.023 -0.476 C16  53L 13 
53L C17  C12 C 0  1 Y N N 60.377 -49.320 55.377 1.422  -0.520 -0.377 C17  53L 14 
53L C18  C13 C 0  1 N N N 60.672 -48.652 54.090 0.284  -1.377 -0.871 C18  53L 15 
53L C19  C14 C 0  1 N N S 60.311 -47.212 54.080 -1.047 -0.826 -0.354 C19  53L 16 
53L C20  C15 C 0  1 N N N 58.849 -47.286 53.869 -1.176 -1.112 1.115  C20  53L 17 
53L O21  O2  O 0  1 N N N 58.145 -47.499 55.003 -0.244 -0.629 1.952  O21  53L 18 
53L N22  N2  N 0  1 N N N 58.267 -47.256 52.719 -2.155 -1.809 1.605  N22  53L 19 
53L C23  C16 C 0  1 N N N 59.039 -47.051 51.610 -3.126 -2.327 0.838  C23  53L 20 
53L O24  O3  O 0  1 N N N 58.520 -47.108 50.507 -4.017 -2.969 1.362  O24  53L 21 
53L N25  N3  N 0  1 N N N 60.361 -46.689 51.752 -3.141 -2.153 -0.493 N25  53L 22 
53L C26  C17 C 0  1 N N N 61.050 -46.639 52.932 -2.181 -1.452 -1.117 C26  53L 23 
53L O27  O4  O 0  1 N N N 62.205 -46.263 53.044 -2.231 -1.318 -2.321 O27  53L 24 
53L N28  N4  N 1  1 N N N 59.769 -52.740 56.545 5.160  -0.818 -0.168 N28  53L 25 
53L O29  O5  O -1 1 N N N 60.203 -53.325 57.541 6.112  -0.155 0.203  O29  53L 26 
53L O30  O6  O 0  1 N N N 59.163 -53.236 55.589 5.336  -1.931 -0.631 O30  53L 27 
53L H2   H1  H 0  1 N N N 61.904 -46.330 55.243 -0.802 0.904  -1.624 H2   53L 28 
53L H3   H2  H 0  1 N N N 58.999 -45.421 55.529 -2.703 0.999  0.763  H3   53L 29 
53L H51  H3  H 0  1 N N N 59.737 -43.328 54.500 -3.783 -0.299 -0.880 H51  53L 30 
53L H52  H4  H 0  1 N N N 61.383 -44.007 54.269 -4.329 1.347  -1.276 H52  53L 31 
53L H53  H5  H 0  1 N N N 59.989 -44.711 53.382 -3.023 0.592  -2.220 H53  53L 32 
53L H7   H6  H 0  1 N N N 58.879 -45.147 57.744 -1.664 3.125  1.489  H7   53L 33 
53L H91  H7  H 0  1 N N N 60.064 -44.788 59.880 -2.425 5.225  0.410  H91  53L 34 
53L H92  H8  H 0  1 N N N 61.563 -44.347 58.994 -0.696 5.311  0.827  H92  53L 35 
53L H93  H9  H 0  1 N N N 60.119 -43.284 58.900 -1.192 5.020  -0.858 H93  53L 36 
53L H102 H10 H 0  0 N N N 60.059 -47.047 58.604 0.240  3.007  -0.896 H102 53L 37 
53L H103 H11 H 0  0 N N N 61.646 -46.374 58.101 0.699  3.193  0.815  H103 53L 38 
53L H13  H12 H 0  1 N N N 60.027 -48.768 58.662 2.156  2.483  0.988  H13  53L 39 
53L H14  H13 H 0  1 N N N 59.715 -51.199 58.641 4.432  1.581  0.796  H14  53L 40 
53L H16  H14 H 0  1 N N N 60.260 -51.229 54.410 2.869  -2.009 -0.886 H16  53L 41 
53L H182 H15 H 0  0 N N N 60.106 -49.160 53.295 0.278  -1.377 -1.961 H182 53L 42 
53L H183 H16 H 0  0 N N N 61.749 -48.743 53.888 0.416  -2.398 -0.511 H183 53L 43 
53L H21  H17 H 0  1 N N N 57.226 -47.610 54.790 -0.352 -0.828 2.892  H21  53L 44 
53L H25  H18 H 0  1 N N N 60.859 -46.442 50.921 -3.859 -2.543 -1.015 H25  53L 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
53L O24 C23  DOUB N N 1  
53L C23 N25  SING N N 2  
53L C23 N22  SING N N 3  
53L N25 C26  SING N N 4  
53L N22 C20  DOUB N N 5  
53L C26 O27  DOUB N N 6  
53L C26 C19  SING N N 7  
53L C20 C19  SING N N 8  
53L C20 O21  SING N N 9  
53L C19 C18  SING N N 10 
53L C19 C2   SING N N 11 
53L C18 C17  SING N N 12 
53L C5  C3   SING N N 13 
53L C2  C3   SING N N 14 
53L C2  N11  SING N N 15 
53L C16 C17  DOUB Y N 16 
53L C16 C15  SING Y N 17 
53L C17 C12  SING Y N 18 
53L C3  O6   SING N N 19 
53L O30 N28  DOUB N N 20 
53L C15 N28  SING N N 21 
53L C15 C14  DOUB Y N 22 
53L N28 O29  SING N N 23 
53L N11 C12  SING N N 24 
53L N11 C10  SING N N 25 
53L C12 C13  DOUB Y N 26 
53L O6  C7   SING N N 27 
53L C14 C13  SING Y N 28 
53L C7  C10  SING N N 29 
53L C7  C9   SING N N 30 
53L C2  H2   SING N N 31 
53L C3  H3   SING N N 32 
53L C5  H51  SING N N 33 
53L C5  H52  SING N N 34 
53L C5  H53  SING N N 35 
53L C7  H7   SING N N 36 
53L C9  H91  SING N N 37 
53L C9  H92  SING N N 38 
53L C9  H93  SING N N 39 
53L C10 H102 SING N N 40 
53L C10 H103 SING N N 41 
53L C13 H13  SING N N 42 
53L C14 H14  SING N N 43 
53L C16 H16  SING N N 44 
53L C18 H182 SING N N 45 
53L C18 H183 SING N N 46 
53L O21 H21  SING N N 47 
53L N25 H25  SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
53L SMILES           ACDLabs              12.01 "C13C(OC(CN1c2ccc(N(=O)=O)cc2CC34C(O)=NC(NC4=O)=O)C)C"                                                                                                                  
53L InChI            InChI                1.03  "InChI=1S/C17H18N4O6/c1-8-7-20-12-4-3-11(21(25)26)5-10(12)6-17(13(20)9(2)27-8)14(22)18-16(24)19-15(17)23/h3-5,8-9,13H,6-7H2,1-2H3,(H2,18,19,22,23,24)/t8-,9+,13-/m1/s1" 
53L InChIKey         InChI                1.03  DJZPHYIXNUOVJU-VYUIOLGVSA-N                                                                                                                                             
53L SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CN2[C@H]([C@H](C)O1)[C@]3(Cc4cc(ccc24)[N](=O)=O)C(=O)NC(=O)N=C3O"                                                                                              
53L SMILES           CACTVS               3.385 "C[CH]1CN2[CH]([CH](C)O1)[C]3(Cc4cc(ccc24)[N](=O)=O)C(=O)NC(=O)N=C3O"                                                                                                   
53L SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN2c3ccc(cc3C[C@@]4([C@H]2[C@@H](O1)C)C(=O)NC(=O)N=C4O)N(=O)=O"                                                                                                
53L SMILES           "OpenEye OEToolkits" 1.9.2 "CC1CN2c3ccc(cc3CC4(C2C(O1)C)C(=O)NC(=O)N=C4O)N(=O)=O"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
53L "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,4S,4aS,5S)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4,4a-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione" 
53L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,4S,4aS,5S)-2,4-dimethyl-8-nitro-6'-oxidanyl-spiro[2,4,4a,6-tetrahydro-1H-[1,4]oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'-dione"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
53L "Create component" 2015-07-22 RCSB 
53L "Initial release"  2015-12-16 RCSB 
# 
