data_UBK
# 
_chem_comp.id                                    UBK 
_chem_comp.name                                  "(2~{R},5~{S},12~{S})-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15-dimethyl-12-thiophen-2-yl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^{5,10}]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H41 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-01 
_chem_comp.pdbx_modified_date                    2023-04-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        663.780 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UBK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CCG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UBK CBU C1  C 0 1 N N N 14.370 -3.731 7.833  -8.304 1.791  -0.047 CBU UBK 1  
UBK OBT O1  O 0 1 N N N 15.057 -2.512 8.090  -8.448 0.381  -0.231 OBT UBK 2  
UBK CAF C2  C 0 1 Y N N 14.522 -1.632 9.032  -7.305 -0.345 -0.356 CAF UBK 3  
UBK CAG C3  C 0 1 Y N N 13.289 -1.778 9.625  -6.072 0.285  -0.298 CAG UBK 4  
UBK CAE C4  C 0 1 Y N N 15.412 -0.628 9.399  -7.370 -1.724 -0.538 CAE UBK 5  
UBK OBR O2  O 0 1 N N N 16.621 -0.610 8.734  -8.578 -2.347 -0.590 OBR UBK 6  
UBK CBS C5  C 0 1 N N N 17.600 0.365  9.084  -8.568 -3.764 -0.778 CBS UBK 7  
UBK CAD C6  C 0 1 Y N N 15.045 0.329  10.328 -6.203 -2.459 -0.665 CAD UBK 8  
UBK CAC C7  C 0 1 Y N N 13.788 0.194  10.928 -4.976 -1.823 -0.612 CAC UBK 9  
UBK CAA C8  C 0 1 Y N N 12.904 -0.822 10.596 -4.911 -0.455 -0.426 CAA UBK 10 
UBK CAB C9  C 0 1 N N N 11.612 -0.928 11.282 -3.571 0.232  -0.363 CAB UBK 11 
UBK CAH C10 C 0 1 N N N 10.392 -0.685 10.329 -3.085 0.270  1.087  CAH UBK 12 
UBK CAI C11 C 0 1 N N R 10.225 0.771  10.103 -1.671 0.852  1.136  CAI UBK 13 
UBK OAK O3  O 0 1 N N N 9.344  0.921  8.921  -0.797 0.076  0.275  OAK UBK 14 
UBK C   C12 C 0 1 N N N 9.928  1.441  7.776  -0.433 -1.145 0.695  C   UBK 15 
UBK O   O4  O 0 1 N N N 11.115 1.676  7.690  -0.854 -1.577 1.743  O   UBK 16 
UBK CA  C13 C 0 1 N N S 8.945  1.663  6.722  0.502  -1.976 -0.146 CA  UBK 17 
UBK CB  C14 C 0 1 N N N 9.178  3.080  6.183  0.036  -3.431 -0.157 CB  UBK 18 
UBK CAU C15 C 0 1 N N N 8.685  4.164  7.198  0.195  -4.031 1.241  CAU UBK 19 
UBK CAV C16 C 0 1 N N N 7.216  4.000  7.417  1.673  -4.008 1.638  CAV UBK 20 
UBK CAW C17 C 0 1 N N N 6.899  2.592  7.906  2.167  -2.560 1.678  CAW UBK 21 
UBK N   N1  N 0 1 N N N 7.529  1.518  6.987  1.856  -1.899 0.410  N   UBK 22 
UBK CAY C18 C 0 1 N N N 6.776  0.589  6.359  2.811  -1.215 -0.251 CAY UBK 23 
UBK OBA O5  O 0 1 N N N 7.383  -0.300 5.755  2.557  -0.702 -1.320 OBA UBK 24 
UBK CAZ C19 C 0 1 N N S 5.360  0.569  6.480  4.193  -1.085 0.334  CAZ UBK 25 
UBK CBC C20 C 0 1 Y N N 4.676  -0.156 5.398  5.025  -2.278 -0.059 CBC UBK 26 
UBK SBN S1  S 0 1 Y N N 5.151  -1.526 4.575  5.820  -2.492 -1.614 SBN UBK 27 
UBK CBO C21 C 0 1 Y N N 3.707  -1.701 3.659  6.462  -4.049 -1.105 CBO UBK 28 
UBK CBP C22 C 0 1 Y N N 2.899  -0.717 4.023  6.065  -4.310 0.141  CBP UBK 29 
UBK CBQ C23 C 0 1 Y N N 3.410  0.152  4.948  5.276  -3.331 0.720  CBQ UBK 30 
UBK NBB N2  N 0 1 N N N 4.896  0.020  7.943  4.812  0.153  -0.199 NBB UBK 31 
UBK CBD C24 C 0 1 N N N 3.706  0.454  8.521  4.282  1.315  0.296  CBD UBK 32 
UBK OBJ O6  O 0 1 N N N 2.999  1.329  7.971  3.389  1.288  1.116  OBJ UBK 33 
UBK CBE C25 C 0 1 N N N 3.254  -0.142 9.776  4.833  2.628  -0.198 CBE UBK 34 
UBK CBK C26 C 0 1 N N N 2.852  -1.576 9.409  4.849  2.635  -1.728 CBK UBK 35 
UBK CBL C27 C 0 1 N N N 2.065  0.647  10.405 6.256  2.819  0.331  CBL UBK 36 
UBK NBM N3  N 0 1 N N N 4.249  -0.283 10.844 3.971  3.722  0.296  NBM UBK 37 
UBK CBH C28 C 0 1 N N N 4.977  0.779  11.296 2.649  3.639  -0.024 CBH UBK 38 
UBK OBI O7  O 0 1 N N N 4.898  1.885  10.708 2.232  2.710  -0.683 OBI UBK 39 
UBK CBG C29 C 0 1 N N N 5.681  0.521  12.528 1.713  4.719  0.454  CBG UBK 40 
UBK OBF O8  O 0 1 N N N 6.324  1.726  12.993 0.623  4.849  -0.460 OBF UBK 41 
UBK CAM C30 C 0 1 Y N N 7.629  1.968  12.577 -0.539 4.226  -0.129 CAM UBK 42 
UBK CAL C31 C 0 1 Y N N 8.275  1.219  11.552 -0.517 2.913  0.320  CAL UBK 43 
UBK CAJ C32 C 0 1 Y N N 9.582  1.480  11.220 -1.697 2.281  0.655  CAJ UBK 44 
UBK CAP C33 C 0 1 Y N N 10.217 2.550  11.808 -2.899 2.954  0.547  CAP UBK 45 
UBK CAO C34 C 0 1 Y N N 9.603  3.320  12.818 -2.923 4.264  0.102  CAO UBK 46 
UBK CAN C35 C 0 1 Y N N 8.307  3.030  13.144 -1.746 4.900  -0.236 CAN UBK 47 
UBK HCD H1  H 0 1 N N N 14.917 -4.307 7.072  -7.779 2.217  -0.902 HCD UBK 48 
UBK HCE H2  H 0 1 N N N 14.305 -4.318 8.761  -9.290 2.248  0.039  HCE UBK 49 
UBK HBU H3  H 0 1 N N N 13.356 -3.510 7.467  -7.734 1.982  0.862  HBU UBK 50 
UBK HAG H4  H 0 1 N N N 12.636 -2.596 9.358  -6.018 1.354  -0.153 HAG UBK 51 
UBK HCC H5  H 0 1 N N N 18.493 0.230  8.456  -8.030 -4.236 0.043  HCC UBK 52 
UBK HBS H6  H 0 1 N N N 17.188 1.372  8.924  -9.594 -4.134 -0.802 HBS UBK 53 
UBK HCB H7  H 0 1 N N N 17.875 0.245  10.142 -8.075 -4.002 -1.720 HCB UBK 54 
UBK HAE H8  H 0 1 N N N 15.702 1.148  10.580 -6.251 -3.529 -0.805 HAE UBK 55 
UBK HAD H9  H 0 1 N N N 13.494 0.911  11.681 -4.067 -2.397 -0.711 HAD UBK 56 
UBK HAC H10 H 0 1 N N N 11.581 -0.181 12.089 -2.853 -0.315 -0.973 HAC UBK 57 
UBK HAB H11 H 0 1 N N N 11.525 -1.937 11.713 -3.667 1.250  -0.740 HAB UBK 58 
UBK HAI H12 H 0 1 N N N 9.480  -1.092 10.790 -3.755 0.893  1.679  HAI UBK 59 
UBK HAH H13 H 0 1 N N N 10.572 -1.187 9.367  -3.076 -0.742 1.494  HAH UBK 60 
UBK HAJ H14 H 0 1 N N N 11.205 1.225  9.891  -1.298 0.819  2.160  HAJ UBK 61 
UBK HA  H15 H 0 1 N N N 9.194  0.977  5.899  0.508  -1.588 -1.166 HA  UBK 62 
UBK HB2 H16 H 0 1 N N N 10.254 3.222  6.002  -1.012 -3.474 -0.453 HB2 UBK 63 
UBK HB1 H17 H 0 1 N N N 8.628  3.198  5.238  0.637  -3.999 -0.867 HB1 UBK 64 
UBK HAU H18 H 0 1 N N N 9.215  4.041  8.154  -0.383 -3.446 1.957  HAU UBK 65 
UBK HB3 H19 H 0 1 N N N 8.887  5.166  6.793  -0.165 -5.060 1.238  HB3 UBK 66 
UBK HAV H20 H 0 1 N N N 6.879  4.728  8.170  1.792  -4.459 2.623  HAV UBK 67 
UBK HB4 H21 H 0 1 N N N 6.687  4.181  6.470  2.254  -4.571 0.908  HB4 UBK 68 
UBK HB5 H22 H 0 1 N N N 5.808  2.455  7.920  1.674  -2.031 2.493  HB5 UBK 69 
UBK HAW H23 H 0 1 N N N 7.297  2.469  8.924  3.245  -2.549 1.837  HAW UBK 70 
UBK HAZ H24 H 0 1 N N N 5.010  1.611  6.438  4.128  -1.024 1.421  HAZ UBK 71 
UBK HBO H25 H 0 1 N N N 3.499  -2.467 2.927  7.080  -4.695 -1.711 HBO UBK 72 
UBK HBP H26 H 0 1 N N N 1.904  -0.608 3.617  6.342  -5.216 0.661  HBP UBK 73 
UBK HBQ H27 H 0 1 N N N 2.863  1.014  5.299  4.888  -3.416 1.724  HBQ UBK 74 
UBK HBB H28 H 0 1 N N N 5.472  -0.636 8.431  5.534  0.141  -0.847 HBB UBK 75 
UBK HBK H29 H 0 1 N N N 2.496  -2.099 10.309 3.834  2.504  -2.102 HBK UBK 76 
UBK HB7 H30 H 0 1 N N N 2.049  -1.551 8.658  5.248  3.585  -2.083 HB7 UBK 77 
UBK HB8 H31 H 0 1 N N N 3.723  -2.107 8.997  5.477  1.820  -2.088 HB8 UBK 78 
UBK HCA H32 H 0 1 N N N 1.760  0.163  11.345 6.888  2.004  -0.025 HCA UBK 79 
UBK HBL H33 H 0 1 N N N 2.379  1.681  10.610 6.653  3.769  -0.027 HBL UBK 80 
UBK HB9 H34 H 0 1 N N N 1.218  0.653  9.704  6.242  2.818  1.421  HB9 UBK 81 
UBK HBM H35 H 0 1 N N N 4.398  -1.183 11.253 4.327  4.458  0.818  HBM UBK 82 
UBK HBG H36 H 0 1 N N N 4.967  0.173  13.289 1.330  4.457  1.440  HBG UBK 83 
UBK HB6 H37 H 0 1 N N N 6.442  -0.255 12.357 2.251  5.665  0.513  HB6 UBK 84 
UBK HAL H38 H 0 1 N N N 7.734  0.442  11.033 0.422  2.387  0.406  HAL UBK 85 
UBK HAP H39 H 0 1 N N N 11.215 2.808  11.487 -3.822 2.458  0.810  HAP UBK 86 
UBK HAO H40 H 0 1 N N N 10.139 4.113  13.318 -3.863 4.788  0.018  HAO UBK 87 
UBK HAN H41 H 0 1 N N N 7.798  3.650  13.867 -1.765 5.922  -0.583 HAN UBK 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UBK CBO CBP DOUB Y N 1  
UBK CBO SBN SING Y N 2  
UBK CBP CBQ SING Y N 3  
UBK SBN CBC SING Y N 4  
UBK CBQ CBC DOUB Y N 5  
UBK CBC CAZ SING N N 6  
UBK OBA CAY DOUB N N 7  
UBK CB  CA  SING N N 8  
UBK CB  CAU SING N N 9  
UBK CAY CAZ SING N N 10 
UBK CAY N   SING N N 11 
UBK CAZ NBB SING N N 12 
UBK CA  N   SING N N 13 
UBK CA  C   SING N N 14 
UBK N   CAW SING N N 15 
UBK CAU CAV SING N N 16 
UBK CAV CAW SING N N 17 
UBK O   C   DOUB N N 18 
UBK C   OAK SING N N 19 
UBK CBU OBT SING N N 20 
UBK NBB CBD SING N N 21 
UBK OBJ CBD DOUB N N 22 
UBK OBT CAF SING N N 23 
UBK CBD CBE SING N N 24 
UBK OBR CBS SING N N 25 
UBK OBR CAE SING N N 26 
UBK OAK CAI SING N N 27 
UBK CAF CAE DOUB Y N 28 
UBK CAF CAG SING Y N 29 
UBK CAE CAD SING Y N 30 
UBK CBK CBE SING N N 31 
UBK CAG CAA DOUB Y N 32 
UBK CBE CBL SING N N 33 
UBK CBE NBM SING N N 34 
UBK CAI CAH SING N N 35 
UBK CAI CAJ SING N N 36 
UBK CAD CAC DOUB Y N 37 
UBK CAH CAB SING N N 38 
UBK CAA CAC SING Y N 39 
UBK CAA CAB SING N N 40 
UBK OBI CBH DOUB N N 41 
UBK NBM CBH SING N N 42 
UBK CAJ CAL DOUB Y N 43 
UBK CAJ CAP SING Y N 44 
UBK CBH CBG SING N N 45 
UBK CAL CAM SING Y N 46 
UBK CAP CAO DOUB Y N 47 
UBK CBG OBF SING N N 48 
UBK CAM OBF SING N N 49 
UBK CAM CAN DOUB Y N 50 
UBK CAO CAN SING Y N 51 
UBK CBU HCD SING N N 52 
UBK CBU HCE SING N N 53 
UBK CBU HBU SING N N 54 
UBK CAG HAG SING N N 55 
UBK CBS HCC SING N N 56 
UBK CBS HBS SING N N 57 
UBK CBS HCB SING N N 58 
UBK CAD HAE SING N N 59 
UBK CAC HAD SING N N 60 
UBK CAB HAC SING N N 61 
UBK CAB HAB SING N N 62 
UBK CAH HAI SING N N 63 
UBK CAH HAH SING N N 64 
UBK CAI HAJ SING N N 65 
UBK CA  HA  SING N N 66 
UBK CB  HB2 SING N N 67 
UBK CB  HB1 SING N N 68 
UBK CAU HAU SING N N 69 
UBK CAU HB3 SING N N 70 
UBK CAV HAV SING N N 71 
UBK CAV HB4 SING N N 72 
UBK CAW HB5 SING N N 73 
UBK CAW HAW SING N N 74 
UBK CAZ HAZ SING N N 75 
UBK CBO HBO SING N N 76 
UBK CBP HBP SING N N 77 
UBK CBQ HBQ SING N N 78 
UBK NBB HBB SING N N 79 
UBK CBK HBK SING N N 80 
UBK CBK HB7 SING N N 81 
UBK CBK HB8 SING N N 82 
UBK CBL HCA SING N N 83 
UBK CBL HBL SING N N 84 
UBK CBL HB9 SING N N 85 
UBK NBM HBM SING N N 86 
UBK CBG HBG SING N N 87 
UBK CBG HB6 SING N N 88 
UBK CAL HAL SING N N 89 
UBK CAP HAP SING N N 90 
UBK CAO HAO SING N N 91 
UBK CAN HAN SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UBK InChI            InChI                1.06  "InChI=1S/C35H41N3O8S/c1-35(2)34(42)36-31(29-12-8-18-47-29)32(40)38-17-6-5-11-25(38)33(41)46-26(15-13-22-14-16-27(43-3)28(19-22)44-4)23-9-7-10-24(20-23)45-21-30(39)37-35/h7-10,12,14,16,18-20,25-26,31H,5-6,11,13,15,17,21H2,1-4H3,(H,36,42)(H,37,39)/t25-,26+,31+/m0/s1" 
UBK InChIKey         InChI                1.06  UGPRMAAAPBGSML-ADRXYBOHSA-N                                                                                                                                                                                                                                                
UBK SMILES_CANONICAL CACTVS               3.385 "COc1ccc(CC[C@H]2OC(=O)[C@@H]3CCCCN3C(=O)[C@H](NC(=O)C(C)(C)NC(=O)COc4cccc2c4)c5sccc5)cc1OC"                                                                                                                                                                               
UBK SMILES           CACTVS               3.385 "COc1ccc(CC[CH]2OC(=O)[CH]3CCCCN3C(=O)[CH](NC(=O)C(C)(C)NC(=O)COc4cccc2c4)c5sccc5)cc1OC"                                                                                                                                                                                   
UBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)N[C@@H](C(=O)N2CCCC[C@H]2C(=O)O[C@@H](c3cccc(c3)OCC(=O)N1)CCc4ccc(c(c4)OC)OC)c5cccs5)C"                                                                                                                                                                          
UBK SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C(=O)NC(C(=O)N2CCCCC2C(=O)OC(c3cccc(c3)OCC(=O)N1)CCc4ccc(c(c4)OC)OC)c5cccs5)C"                                                                                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           UBK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},5~{S},12~{S})-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15-dimethyl-12-thiophen-2-yl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^{5,10}]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UBK "Create component" 2023-02-01 PDBE 
UBK "Initial release"  2023-04-26 RCSB 
# 
