data_PBK
# 
_chem_comp.id                                    PBK 
_chem_comp.name                                  "5'-O-[(R)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H36 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-08 
_chem_comp.pdbx_modified_date                    2015-11-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      1ZZ 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        529.524 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PBK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PBK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PBK P    P    P 0 1 N N N -2.520 52.692 70.954 -0.073  1.774  -0.636 P    PBK 1  
PBK C1   C1   C 0 1 N N N 9.899  51.301 62.638 -15.793 -2.170 0.657  C1   PBK 2  
PBK N1   N1   N 0 1 Y N N -5.621 55.604 66.353 6.065   -0.812 -0.030 N1   PBK 3  
PBK O1   O1   O 0 1 N N N -1.628 54.467 68.129 -2.730  1.794  -1.143 O1   PBK 4  
PBK C2   C2   C 0 1 N N N 8.740  51.630 63.565 -14.694 -1.344 -0.014 C2   PBK 5  
PBK N2   N2   N 0 1 Y N N -3.809 55.257 65.101 6.468   -2.344 -1.532 N2   PBK 6  
PBK O2   O2   O 0 1 N N N -1.259 52.854 69.886 -1.170  0.869  0.119  O2   PBK 7  
PBK C3   C3   C 0 1 N N N 7.294  51.244 63.210 -13.340 -1.696 0.605  C3   PBK 8  
PBK N3   N3   N 0 1 Y N N -6.755 57.094 64.528 7.920   -1.480 1.498  N3   PBK 9  
PBK O3   O3   O 0 1 N N N -2.963 51.020 71.552 0.001   1.345  -2.186 O3   PBK 10 
PBK C4   C4   C 0 1 N N N 6.173  52.312 63.260 -12.242 -0.870 -0.067 C4   PBK 11 
PBK N4   N4   N 0 1 Y N N -5.595 57.381 62.611 9.178   -3.275 0.765  N4   PBK 12 
PBK O4   O4   O 0 1 N N N -1.977 53.251 72.075 -0.457  3.200  -0.536 O4   PBK 13 
PBK C5   C5   C 0 1 N N N 4.835  52.012 63.981 -10.888 -1.222 0.553  C5   PBK 14 
PBK N5   N5   N 0 1 N N N -3.397 56.383 62.335 8.743   -4.394 -1.266 N5   PBK 15 
PBK O5   O5   O 0 1 N N N -3.856 53.493 70.575 1.367   1.556  0.051  O5   PBK 16 
PBK C6   C6   C 0 1 N N N 3.498  52.223 63.287 -9.789  -0.396 -0.119 C6   PBK 17 
PBK O6   O6   O 0 1 N N N -5.651 55.233 68.558 4.069   0.479  0.205  O6   PBK 18 
PBK C7   C7   C 0 1 N N N 2.292  52.124 64.196 -8.435  -0.749 0.500  C7   PBK 19 
PBK O7   O7   O 0 1 N N N -8.952 54.462 67.680 7.075   2.034  1.248  O7   PBK 20 
PBK C8   C8   C 0 1 N N N 1.081  53.019 64.013 -7.336  0.078  -0.171 C8   PBK 21 
PBK O8   O8   O 0 1 N N N -7.687 52.257 68.254 5.173   3.721  1.107  O8   PBK 22 
PBK C9   C9   C 0 1 N N N 0.325  53.461 65.269 -5.983  -0.275 0.448  C9   PBK 23 
PBK C10  C10  C 0 1 N N N 0.035  52.388 66.315 -4.884  0.551  -0.224 C10  PBK 24 
PBK C11  C11  C 0 1 N N N 0.023  52.708 67.747 -3.530  0.199  0.396  C11  PBK 25 
PBK C12  C12  C 0 1 N N N -1.082 53.412 68.480 -2.448  1.013  -0.266 C12  PBK 26 
PBK C13  C13  C 0 1 N N N -4.589 53.080 69.465 2.529   2.299  -0.326 C13  PBK 27 
PBK C14  C14  C 0 1 N N R -5.825 53.862 69.013 3.720   1.844  0.520  C14  PBK 28 
PBK C15  C15  C 0 1 N N S -6.790 53.275 67.949 4.978   2.666  0.162  C15  PBK 29 
PBK C16  C16  C 0 1 N N R -7.547 54.444 67.508 6.132   1.643  0.248  C16  PBK 30 
PBK C17  C17  C 0 1 N N R -6.537 55.545 67.512 5.435   0.323  0.648  C17  PBK 31 
PBK C18  C18  C 0 1 Y N N -4.438 55.018 66.314 5.691   -1.345 -1.228 C18  PBK 32 
PBK C19  C19  C 0 1 Y N N -4.675 56.070 64.360 7.389   -2.513 -0.553 C19  PBK 33 
PBK C20  C20  C 0 1 Y N N -5.748 56.296 65.072 7.143   -1.531 0.421  C20  PBK 34 
PBK C21  C21  C 0 1 Y N N -6.649 57.608 63.284 8.909   -2.336 1.653  C21  PBK 35 
PBK C22  C22  C 0 1 Y N N -4.562 56.599 63.143 8.453   -3.406 -0.341 C22  PBK 36 
PBK H1   H1   H 0 1 N N N 10.838 51.664 63.081 -15.591 -3.231 0.510  H1   PBK 37 
PBK H1A  H1A  H 0 1 N N N 9.957  50.212 62.496 -15.813 -1.949 1.724  H1A  PBK 38 
PBK H1B  H1B  H 0 1 N N N 9.740  51.789 61.665 -16.757 -1.919 0.216  H1B  PBK 39 
PBK H2   H2   H 0 1 N N N 8.964  51.145 64.526 -14.674 -1.565 -1.082 H2   PBK 40 
PBK H2A  H2A  H 0 1 N N N 8.747  52.722 63.695 -14.896 -0.283 0.133  H2A  PBK 41 
PBK H3   H3   H 0 1 N N N 7.313  50.852 62.183 -13.360 -1.475 1.672  H3   PBK 42 
PBK H3A  H3A  H 0 1 N N N 7.000  50.442 63.903 -13.139 -2.757 0.458  H3A  PBK 43 
PBK H4   H4   H 0 1 N N N 6.603  53.198 63.749 -12.222 -1.091 -1.134 H4   PBK 44 
PBK H4A  H4A  H 0 1 N N N 5.922  52.555 62.217 -12.443 0.191  0.081  H4A  PBK 45 
PBK H5   H5   H 0 1 N N N 4.870  50.952 64.273 -10.908 -1.001 1.620  H5   PBK 46 
PBK H5A  H5A  H 0 1 N N N 4.820  52.641 64.883 -10.686 -2.283 0.405  H5A  PBK 47 
PBK HN5  HN5  H 0 1 N N N -3.506 56.853 61.459 9.484   -5.001 -1.111 HN5  PBK 48 
PBK HN5A HN5A H 0 0 N N N -2.592 56.742 62.808 8.206   -4.479 -2.069 HN5A PBK 49 
PBK H6   H6   H 0 1 N N N 3.503  53.224 62.831 -9.769  -0.618 -1.186 H6   PBK 50 
PBK H6A  H6A  H 0 1 N N N 3.397  51.462 62.499 -9.991  0.665  0.028  H6A  PBK 51 
PBK H7   H7   H 0 1 N N N 1.927  51.089 64.115 -8.455  -0.527 1.567  H7   PBK 52 
PBK H7A  H7A  H 0 1 N N N 2.659  52.304 65.217 -8.233  -1.810 0.353  H7A  PBK 53 
PBK HO7  HO7  H 0 1 N N N -9.302 55.281 67.348 7.499   2.886  1.078  HO7  PBK 54 
PBK H8   H8   H 0 1 N N N 1.420  53.929 63.497 -7.316  -0.144 -1.238 H8   PBK 55 
PBK H8A  H8A  H 0 1 N N N 0.367  52.479 63.373 -7.538  1.138  -0.024 H8A  PBK 56 
PBK HO8  HO8  H 0 1 N N N -8.188 52.033 67.479 5.949   4.269  0.930  HO8  PBK 57 
PBK H9   H9   H 0 1 N N N 0.921  54.247 65.756 -6.003  -0.054 1.515  H9   PBK 58 
PBK H9A  H9A  H 0 1 N N N -0.640 53.879 64.946 -5.781  -1.336 0.301  H9A  PBK 59 
PBK H10  H10  H 0 1 N N N -0.959 51.981 66.078 -4.864  0.330  -1.291 H10  PBK 60 
PBK H10A H10A H 0 0 N N N 0.794  51.604 66.177 -5.086  1.612  -0.076 H10A PBK 61 
PBK H11  H11  H 0 1 N N N 0.141  51.742 68.260 -3.550  0.420  1.463  H11  PBK 62 
PBK H11A H11A H 0 0 N N N 0.919  53.324 67.913 -3.328  -0.862 0.249  H11A PBK 63 
PBK H13  H13  H 0 1 N N N -3.893 53.072 68.613 2.745   2.126  -1.380 H13  PBK 64 
PBK H13A H13A H 0 0 N N N -4.925 52.054 69.674 2.350   3.361  -0.161 H13A PBK 65 
PBK H14  H14  H 0 1 N N N -6.443 53.939 69.920 3.490   1.942  1.581  H14  PBK 66 
PBK H15  H15  H 0 1 N N N -6.164 52.947 67.106 4.897   3.069  -0.847 H15  PBK 67 
PBK H16  H16  H 0 1 N N N -7.528 54.234 66.428 6.624   1.539  -0.719 H16  PBK 68 
PBK H17  H17  H 0 1 N N N -7.028 56.517 67.669 5.470   0.186  1.729  H17  PBK 69 
PBK H18  H18  H 0 1 N N N -4.017 54.432 67.118 4.872   -0.990 -1.835 H18  PBK 70 
PBK H21  H21  H 0 1 N N N -7.448 58.203 62.867 9.522   -2.267 2.539  H21  PBK 71 
PBK H36  H36  H 0 1 N N N -2.721 50.936 72.467 0.248   0.421  -2.327 H36  PBK 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PBK P   O2   SING N N 1  
PBK P   O3   SING N N 2  
PBK P   O4   DOUB N N 3  
PBK P   O5   SING N N 4  
PBK C1  C2   SING N N 5  
PBK C1  H1   SING N N 6  
PBK C1  H1A  SING N N 7  
PBK C1  H1B  SING N N 8  
PBK N1  C17  SING N N 9  
PBK N1  C18  SING Y N 10 
PBK N1  C20  SING Y N 11 
PBK O1  C12  DOUB N N 12 
PBK C2  C3   SING N N 13 
PBK C2  H2   SING N N 14 
PBK C2  H2A  SING N N 15 
PBK N2  C18  DOUB Y N 16 
PBK N2  C19  SING Y N 17 
PBK O2  C12  SING N N 18 
PBK C3  C4   SING N N 19 
PBK C3  H3   SING N N 20 
PBK C3  H3A  SING N N 21 
PBK N3  C20  DOUB Y N 22 
PBK N3  C21  SING Y N 23 
PBK C4  C5   SING N N 24 
PBK C4  H4   SING N N 25 
PBK C4  H4A  SING N N 26 
PBK N4  C21  DOUB Y N 27 
PBK N4  C22  SING Y N 28 
PBK C5  C6   SING N N 29 
PBK C5  H5   SING N N 30 
PBK C5  H5A  SING N N 31 
PBK N5  C22  SING N N 32 
PBK N5  HN5  SING N N 33 
PBK N5  HN5A SING N N 34 
PBK O5  C13  SING N N 35 
PBK C6  C7   SING N N 36 
PBK C6  H6   SING N N 37 
PBK C6  H6A  SING N N 38 
PBK O6  C14  SING N N 39 
PBK O6  C17  SING N N 40 
PBK C7  C8   SING N N 41 
PBK C7  H7   SING N N 42 
PBK C7  H7A  SING N N 43 
PBK O7  C16  SING N N 44 
PBK O7  HO7  SING N N 45 
PBK C8  C9   SING N N 46 
PBK C8  H8   SING N N 47 
PBK C8  H8A  SING N N 48 
PBK O8  C15  SING N N 49 
PBK O8  HO8  SING N N 50 
PBK C9  C10  SING N N 51 
PBK C9  H9   SING N N 52 
PBK C9  H9A  SING N N 53 
PBK C10 C11  SING N N 54 
PBK C10 H10  SING N N 55 
PBK C10 H10A SING N N 56 
PBK C11 C12  SING N N 57 
PBK C11 H11  SING N N 58 
PBK C11 H11A SING N N 59 
PBK C13 C14  SING N N 60 
PBK C13 H13  SING N N 61 
PBK C13 H13A SING N N 62 
PBK C14 C15  SING N N 63 
PBK C14 H14  SING N N 64 
PBK C15 C16  SING N N 65 
PBK C15 H15  SING N N 66 
PBK C16 C17  SING N N 67 
PBK C16 H16  SING N N 68 
PBK C17 H17  SING N N 69 
PBK C18 H18  SING N N 70 
PBK C19 C20  SING Y N 71 
PBK C19 C22  DOUB Y N 72 
PBK C21 H21  SING N N 73 
PBK O3  H36  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PBK SMILES           ACDLabs              12.01 "P(OC(=O)CCCCCCCCCCC)(O)(=O)OCC3OC(n1cnc2c1ncnc2N)C(O)C3O" 
PBK InChI            InChI                1.03  
"InChI=1S/C22H36N5O8P/c1-2-3-4-5-6-7-8-9-10-11-16(28)35-36(31,32)33-12-15-18(29)19(30)22(34-15)27-14-26-17-20(23)24-13-25-21(17)27/h13-15,18-19,22,29-30H,2-12H2,1H3,(H,31,32)(H2,23,24,25)/t15-,18-,19-,22-/m1/s1" 
PBK InChIKey         InChI                1.03  IKBWVSPLSBIYSK-CIVUBGFFSA-N 
PBK SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
PBK SMILES           CACTVS               3.385 "CCCCCCCCCCCC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
PBK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCCCCCCC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 
PBK SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCCCCCCCCC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PBK "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-(dodecanoyloxy)(hydroxy)phosphoryl]adenosine"                                                      
PBK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] dodecanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PBK "Create component"     2010-11-08 RCSB 
PBK "Modify aromatic_flag" 2011-06-04 RCSB 
PBK "Modify descriptor"    2011-06-04 RCSB 
PBK "Obsolete component"   2015-11-25 RCSB 
# 
