data_LDK
#

_chem_comp.id                                   LDK
_chem_comp.name                                 "(2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H16 N2 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-08-05
_chem_comp.pdbx_modified_date                   2020-08-21
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       356.306
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LDK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SGP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LDK  OE1  O1   O  0  1  N  N  N  23.918  49.279  42.613   5.421  -0.359   0.389  OE1  LDK   1  
LDK  CD   C1   C  0  1  N  N  N  24.126  48.134  43.089   4.635  -1.095  -0.160  CD   LDK   2  
LDK  OE2  O2   O  0  1  N  N  N  25.105  47.810  43.809   5.071  -2.215  -0.758  OE2  LDK   3  
LDK  CG   C2   C  0  1  N  N  N  23.109  47.019  42.754   3.166  -0.761  -0.166  CG   LDK   4  
LDK  CB   C3   C  0  1  N  N  N  21.668  47.486  43.017   2.939   0.553   0.585  CB   LDK   5  
LDK  CA   C4   C  0  1  N  N  S  20.814  46.343  43.602   1.464   0.946   0.491  CA   LDK   6  
LDK  C    C5   C  0  1  N  N  N  20.583  46.625  45.115   1.213   2.163   1.343  C    LDK   7  
LDK  OXT  O3   O  0  1  N  N  N  21.223  45.900  45.899   1.071   2.035   2.672  OXT  LDK   8  
LDK  O    O4   O  0  1  N  N  N  19.839  47.563  45.462   1.139   3.255   0.830  O    LDK   9  
LDK  N    N1   N  0  1  N  N  N  19.574  46.180  42.798   1.126   1.247  -0.902  N    LDK  10  
LDK  SAW  S1   S  0  1  N  N  N  18.430  44.925  43.130  -0.448   1.159  -1.410  SAW  LDK  11  
LDK  OAE  O5   O  0  1  N  N  N  18.455  44.700  44.631  -1.207   1.949  -0.504  OAE  LDK  12  
LDK  OAF  O6   O  0  1  N  N  N  18.610  43.600  42.374  -0.430   1.386  -2.812  OAF  LDK  13  
LDK  NAP  N2   N  0  1  N  N  N  16.940  45.444  42.525  -0.946  -0.406  -1.196  NAP  LDK  14  
LDK  CAV  C6   C  0  1  N  N  S  16.289  44.719  41.402  -1.169  -0.925   0.156  CAV  LDK  15  
LDK  CAT  C7   C  0  1  N  N  N  17.169  44.699  40.144  -0.294  -2.130   0.382  CAT  LDK  16  
LDK  OAJ  O7   O  0  1  N  N  N  18.105  45.538  40.062   0.134  -2.426   1.620  OAJ  LDK  17  
LDK  OAD  O8   O  0  1  N  N  N  16.836  43.885  39.250   0.024  -2.830  -0.550  OAD  LDK  18  
LDK  CAN  C8   C  0  1  N  N  N  14.945  45.431  41.040  -2.638  -1.325   0.313  CAN  LDK  19  
LDK  CAL  C9   C  0  1  N  N  N  15.259  46.873  40.571  -3.520  -0.079   0.207  CAL  LDK  20  
LDK  CAR  C10  C  0  1  N  N  N  13.979  47.588  40.089  -4.966  -0.473   0.361  CAR  LDK  21  
LDK  OAH  O9   O  0  1  N  N  N  13.121  46.966  39.423  -5.261  -1.631   0.537  OAH  LDK  22  
LDK  OAB  O10  O  0  1  N  N  N  13.896  48.783  40.344  -5.927   0.463   0.302  OAB  LDK  23  
LDK  H1   H1   H  0  1  N  N  N  25.666  48.565  43.939   6.022  -2.389  -0.725  H1   LDK  24  
LDK  H2   H2   H  0  1  N  N  N  23.321  46.139  43.380   2.822  -0.656  -1.194  H2   LDK  25  
LDK  H3   H3   H  0  1  N  N  N  23.210  46.747  41.693   2.609  -1.560   0.324  H3   LDK  26  
LDK  H4   H4   H  0  1  N  N  N  21.686  48.323  43.731   3.216   0.426   1.632  H4   LDK  27  
LDK  H5   H5   H  0  1  N  N  N  21.220  47.821  42.070   3.553   1.337   0.140  H5   LDK  28  
LDK  H6   H6   H  0  1  N  N  N  21.400  45.416  43.525   0.845   0.121   0.845  H6   LDK  29  
LDK  H7   H7   H  0  1  N  N  N  21.055  46.174  46.793   0.912   2.844   3.177  H7   LDK  30  
LDK  H8   H8   H  0  1  N  N  N  19.868  46.048  41.851   1.824   1.497  -1.527  H8   LDK  31  
LDK  H9   H9   H  0  1  N  N  N  17.067  46.388  42.221  -1.090  -0.979  -1.965  H9   LDK  32  
LDK  H10  H10  H  0  1  N  N  N  16.070  43.684  41.705  -0.923  -0.154   0.887  H10  LDK  33  
LDK  H11  H11  H  0  1  N  N  N  18.526  45.462  39.214   0.693  -3.209   1.716  H11  LDK  34  
LDK  H12  H12  H  0  1  N  N  N  14.293  45.463  41.925  -2.908  -2.030  -0.474  H12  LDK  35  
LDK  H13  H13  H  0  1  N  N  N  14.440  44.881  40.232  -2.785  -1.792   1.286  H13  LDK  36  
LDK  H14  H14  H  0  1  N  N  N  15.982  46.833  39.743  -3.250   0.626   0.993  H14  LDK  37  
LDK  H15  H15  H  0  1  N  N  N  15.693  47.438  41.409  -3.373   0.389  -0.767  H15  LDK  38  
LDK  H16  H16  H  0  1  N  N  N  13.100  49.134  39.962  -6.840   0.162   0.406  H16  LDK  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LDK  OAD  CAT  DOUB  N  N   1  
LDK  OAH  CAR  DOUB  N  N   2  
LDK  OAJ  CAT  SING  N  N   3  
LDK  CAR  OAB  SING  N  N   4  
LDK  CAR  CAL  SING  N  N   5  
LDK  CAT  CAV  SING  N  N   6  
LDK  CAL  CAN  SING  N  N   7  
LDK  CAN  CAV  SING  N  N   8  
LDK  CAV  NAP  SING  N  N   9  
LDK  OAF  SAW  DOUB  N  N  10  
LDK  NAP  SAW  SING  N  N  11  
LDK  OE1  CD   DOUB  N  N  12  
LDK  CG   CB   SING  N  N  13  
LDK  CG   CD   SING  N  N  14  
LDK  N    SAW  SING  N  N  15  
LDK  N    CA   SING  N  N  16  
LDK  CB   CA   SING  N  N  17  
LDK  CD   OE2  SING  N  N  18  
LDK  SAW  OAE  DOUB  N  N  19  
LDK  CA   C    SING  N  N  20  
LDK  C    O    DOUB  N  N  21  
LDK  C    OXT  SING  N  N  22  
LDK  OE2  H1   SING  N  N  23  
LDK  CG   H2   SING  N  N  24  
LDK  CG   H3   SING  N  N  25  
LDK  CB   H4   SING  N  N  26  
LDK  CB   H5   SING  N  N  27  
LDK  CA   H6   SING  N  N  28  
LDK  OXT  H7   SING  N  N  29  
LDK  N    H8   SING  N  N  30  
LDK  NAP  H9   SING  N  N  31  
LDK  CAV  H10  SING  N  N  32  
LDK  OAJ  H11  SING  N  N  33  
LDK  CAN  H12  SING  N  N  34  
LDK  CAN  H13  SING  N  N  35  
LDK  CAL  H14  SING  N  N  36  
LDK  CAL  H15  SING  N  N  37  
LDK  OAB  H16  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LDK  InChI             InChI                 1.03   "InChI=1S/C10H16N2O10S/c13-7(14)3-1-5(9(17)18)11-23(21,22)12-6(10(19)20)2-4-8(15)16/h5-6,11-12H,1-4H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)/t5-,6-/m0/s1"  
LDK  InChIKey          InChI                 1.03   VLYWUCXOEFVQPS-WDSKDSINSA-N  
LDK  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)CC[C@H](N[S](=O)(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O"  
LDK  SMILES            CACTVS                3.385  "OC(=O)CC[CH](N[S](=O)(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O"  
LDK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C(CC(=O)O)[C@@H](C(=O)O)NS(=O)(=O)N[C@@H](CCC(=O)O)C(=O)O"  
LDK  SMILES            "OpenEye OEToolkits"  2.0.7  "C(CC(=O)O)C(C(=O)O)NS(=O)(=O)NC(CCC(=O)O)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          LDK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-1,5-bis(oxidanyl)-1,5-bis(oxidanylidene)pentan-2-yl]sulfamoylamino]pentanedioic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LDK  "Create component"  2019-08-05  PDBE  
LDK  "Initial release"   2020-08-26  RCSB  
##
